AMCG00000348 (degs2,LOC107697737,LOC107733197)


Basic Information

Item Value
gene id AMCG00000348
gene name degs2,LOC107697737,LOC107733197
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 12366465 ~ 12379163 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000348
GCCTATCTTCAGTGTGGTGCTCGGTGTGGGTGTTTGAGGTTCACACGCTTGGCACAGCGCTGGGATATCTCCAGGGAGGAGCCTTCAGTCACCCTTACCTGCGCGGAGGGGAGTGCCTGTGCCGGGCGAGAGAGGAGCGCCTGAGCCGCAGCGTGTGAGCCGCAGGACCGAGCAGCAGCCATGGGGAGCCGAGCTGCCAGAGGGGACTTCGAGTGGGTCTACACCGACCAACCGCACACCTCCAGAAGAAAAGAGATCCTGGCTAGATATCCAGAGATCAAGTCTCTCATGGGTCCAGACCCTCACTTGAAATGGATAGTTTCAGGGATGGTCTTCGTACAGCTGCTGGCATGTTACCTGGTGAGCGAGCTCCCTTGGAAATGGATCGTGTTCTGGGCCTATGCGTTCGGGGGGTGCATCAACCACTCCTTAACACTGGCCATCCATGACATCTCTCACAACGTGGCCTTTGGCAACAAGCAGGCCCGGTGGAACCGCTGGTTTGCCATATTTGCCAACTTGCCGATTGGCTTGCCCTACTCTGCCTCCTTCAAAAAGTACCACATTGACCACCACAGATACCTGGGTGGAGACGGGCTGGACGTGGACATTCCTACAGACCTGGAGGGCTGGTTCTTCTGCACACCACTGCGCAAAATAGTTTGGCTCTTCCTCCAGCCTTTCTTCTACGCACTGAGGCCCCTCTATGTCAACCCCAAGCCTGTCTCCAGGATGGAGATGCTCAATGCGATGGTGCAGTTTTCTGTTGACTTTGTCATCTACTACCTGTGGGGTCTGAAGCCAGTGGTGTACCTGTGGGCCGGCTCCATACTGTGTTTGGGCTTTCACCCCATCTCGGGGCATTTTATTGCAGAACACTACATGTTTCTCAAAGGACACGAAACATACTCCTACTATGGACCCCTCAACTTGATCACCTTCAATGTGGGATACCACATGGAGCACCACGATTTCCCCAGCATCCCTGGCAGTAAACTACCACTGGTGAAGAAGATCGCAGCTGAGTTCTACGACACGCTGCCCCAGCACACCTCCTGGATACGCGTGCTGTGGGACTTTGTGTTTGATGACAGCATCGGGCCATACGCCAGAATAAAGAGGCAGTACAAGCTGGCCAAAGAGGGTTGACCACGCACAACACACCACGCcttcataattattttgaatgttttgagTTGAGTTGTCTTAAATTTGTGTATTAAGAACATAAATGATTCTACCGTCTGTTACGTCTGAAGtatgctgtatgtttttttggagGAATTCATATATTGCATCTGTACAAGAAAAGCTCTTTCCTCTATGAAGTCCCCTGTTGTTGttcatcttttctttcattaagaGGACACGGATTTGACTGTGGTACaaaactgggggaaaaaatctgGTCAACAAAACTATTTGGGTGGACCATACGTGTCGAACATCCCGCAGGAGTTTCCTGCTCTCTCTAATCACttgcattttgaaaattgattttTGAAGAAATTTTTGGCATGTCATAAAAAGGTCGGTCAAGGACTGCTTCCAATGCAAAAGTCTGAACTGTTCATGCTGTTGAAATAGTCCCCAGGATCAATTAAGCAGATTATTTGAACATACAAATATTAGCTAAATAAGATAAAGAGCCAAACTGCTAACatctatttgtaaaaaaaatgttttgagacAACAAAACCCAAaccagacaacaacaaaaatggtcACTTCttccacttttctgtttttctaggGAAAACCTACAACTTGTTGAGTTGTGGTAACAGCAGCACAAAGTAAAAACTGAACTTATGTCcttgaatacatacaaatatgttgtgtgttttgcaggacaggcattcaaatgtattttcttgattaTGTAAATCACGATTGCAGTTGCAGCCGATGTTTCTGTTTGTAGTGATTTACAGTGAGTGGTTTcaacagagaaaaaaactcCTGGATGTGCATATGTGGTATTGAACATTCACTTTCATTTATATTGATTTCATATCCTCAGTTTGTACATATGCCCTTGCCCTTGTGTTATATGCTGTGCTTTGCATTCCTAATACAGCACTTTCATGCCTCCAAGTTATTTTAAGCTAAGGTTTGCTTACTTTCATAAAATCGACAGTTGTTTTGTGCACAGGAATTAAAATGTGAGCTACAAGAAAATCTGAATTTACATAAcctttgtgtgtgctgtgatgtcattctgttttcactgttttatttctATTGATGTGTTTGTTCTGAAAATTCTACCAGAACTGAAATATTGATACAAtaaatcttgtatttttatgttaacaAGCGG

Function

symbol description
degs2 Predicted to enable sphingolipid delta-4 desaturase activity and sphingosine hydroxylase activity. Predicted to be involved in ceramide biosynthetic process and sphinganine metabolic process. Predicted to act upstream of or within sphingolipid biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Orthologous to human DEGS2 (delta 4-desaturase, sphingolipid 2).

NR:

description
PREDICTED: sphingolipid delta(4)-desaturase/C4-monooxygenase DES2

GO:

id name namespace
GO:0006633 fatty acid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function

KEGG:

id description
K04712 DEGS; sphingolipid 4-desaturase/C4-monooxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000348 True 2323 mRNA 0.45 3 12366465 12379163

Neighbor

gene id symbol gene type direction distance location
AMCG00000343 NA coding downstream 185003 12173635 ~ 12181462 (-)
AMCG00000341 NA coding downstream 204898 12159466 ~ 12161567 (-)
AMCG00000342 NA coding downstream 221815 12143523 ~ 12144650 (-)
AMCG00000356 NA coding downstream 340969 12024594 ~ 12025496 (-)
AMCG00000355 NA coding downstream 347284 12005106 ~ 12019181 (-)
AMCG00000360 slc25a29,LOC101165114 coding upstream 25441 12404604 ~ 12414806 (-)
AMCG00000361 wars,LOC107088075,LOC103399041 coding upstream 43840 12423003 ~ 12428292 (-)
AMCG00000362 NA coding upstream 81467 12460630 ~ 12471493 (-)
AMCG00000364 NA coding upstream 110020 12489183 ~ 12517199 (-)
AMCG00000363 NA coding upstream 170067 12549230 ~ 12554739 (-)
G149802 NA non-coding downstream 20755 12345409 ~ 12345710 (-)
G149801 NA non-coding downstream 62122 12304000 ~ 12304343 (-)
G149763 NA non-coding downstream 207994 12157749 ~ 12158471 (-)
G149756 NA non-coding downstream 267974 12090647 ~ 12098491 (-)
G149755 NA non-coding downstream 276199 12090007 ~ 12090266 (-)
G149942 dync1h1,LOC107568493 non-coding upstream 438617 12817780 ~ 12825281 (-)
G149994 NA non-coding upstream 563423 12942586 ~ 12946121 (-)
G149995 NA non-coding upstream 568153 12947316 ~ 12949350 (-)
G149996 NA non-coding upstream 570762 12949925 ~ 12950128 (-)
G150007 NA non-coding upstream 587797 12966960 ~ 12968715 (-)
G149751 NA other downstream 283251 12081543 ~ 12083214 (-)
AMCG00000336 NA other downstream 518517 11840480 ~ 11847948 (-)
AMCG00000334 NA other downstream 557640 11787089 ~ 11808825 (-)
AMCG00000300 NA other downstream 2307465 10029727 ~ 10059000 (-)
G149441 NA other downstream 2430915 9930970 ~ 9935550 (-)
G149847 NA other upstream 143357 12522520 ~ 12542310 (-)
G150138 NA other upstream 1444791 13823954 ~ 13826709 (-)
AMCG00000409 exoc5 other upstream 1623913 14003076 ~ 14028927 (-)
AMCG00000425 entpd5,LOC107586906,LOC105908609,LOC106571572,LOC106608092 other upstream 1866654 14245817 ~ 14261332 (-)
AMCG00000436 NA other upstream 2190799 14569962 ~ 14572432 (-)

Expression


Co-expression Network