AMCG00000361 (wars,LOC107088075,LOC103399041)


Basic Information

Item Value
gene id AMCG00000361
gene name wars,LOC107088075,LOC103399041
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 12423003 ~ 12428292 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000361
ATGTCTAGGACTGCCGCAACGTACGGCAACGTGCCAGTCCAAATAGGAAGTGTGGGGCAGCTGGGCACATTATTGGAAATGACTGACTGCCAGACCGGTGGGCCAGCAGGGGTTGCCCCCATGGAGCTTTATGAAAAGCTGACAGCACAGGGAGAGAAAGTGAGGGCTCTGAAAGCGGAAAAGGCTGCTAAGGAGGATATCGATGCTGCAGTGAAGCAGTTACTACAGTTGAAGGTAGATTACACAGCTGTCACGGGTCAGCCCTACGTAGCCGGCTGTCCACCCAGCGATGCTGCTGCCCCACTGGACAATGGAGCTCCCGCCAGCATGGGGGATGATCTTGTCGACCCCTGGAACGTGTCCACCTCCAACGCGAAAGGAGTAGACTACGACAAGCTCATTGTGCGAGACATGCACCAGATCCTGGACGCCTACGAAAATAAGAAATCCTTTTACCTGTACACTGGGAGGGGGCCATCTTCCGAGGCAATGCACATGGGACACCTCATACCCTTCATTTTTACAAAGTGGCTCCAGGACGTGTTTGACATCCCGCTGGTCATTCAGCTGACGGACGATGAGAAGTACCTGTGGAAGGACCTGTCCCTGGAGGACTGCCAACGCTTCGCAGTGGAGAACGCCAAGGACATCATCGCATGTGGCTTTGACGTTAACAAGACCTTCATCTTCTCTGACCTGGATTATATGGGAAAGAGCCCAGGGTTCTACAGGAATATTGTTAAAGTCCAAAAGCATGTGACGTTCAACCAAGTGAAAGGGATCTTCGGTTTCACTGACAGCGACTGCATCGGAAAGATCAGCTTCCCTGCCATCCAGGCAGCTCCATCCTTCAGTACCTCCTTCCCGCACATTTTCAATGGCCGGGCGGATGTGCAGTGTCTCATCCCATGCGCCATCGATCAGGACCCCTATTTCAGGATGACTCGGGATGTCGCCCCCCGCATTGGTTACCCCAAACCAGCTCTGCTGCACTCGACCTTCTTCCCCGCCCTACAGGGAGCCCAAACCAAGATGAGTAGCAGCGACCCCAACTCCTCCATCTTCCTCACTGATACGGCAAAACAGATCAAGAACAAGATCAATAAACATGCCTTCTCTGGCGGAAAAGACACGGTTGAAGAGCACAGGCAGTACGGAGGTAACCCTGATGTGGACGTGTCTTTCATGTACCTGACTTTCTTCCTGGAGGACGACGAGAAGCTGGAAAAGATTAGACAGgactaTGCGAGTGGAGCTCTTTTGACAGGGGAGTTGAAGAAATGTCTGATAGAAACCCTACAGCCCATGATTTTAGCCCATCAAGAGCAACGCAAAAAAGTAACAGAGGAGACTGTCCGTCAGTTCATGACTCCCAGGAAACTGGATTTTAATTACTAAAAGAGGAACACACCAGGGTCCTGTCAGTTATGGATTGAATTCAGTATCAATCCTGGGTCTAAATGTGAAGCCATTGTCGAGTGGTTTTCAGATCAAAGCTGTTCGCCCCATTGCACTACTACTACAGCCAAATGTGTATAGATCGTGTCCTCTACAGCACAATACATGTTCAATAAATTACCCATAATCATTGCAGCTGCTCTTGTCATTGTAATATTGcctgtttttaaatcaatttttcaattttcccTCTCAAAGAGTGTCAAGG

Function

symbol description
wars Enables tryptophan-tRNA ligase activity. Involved in tryptophanyl-tRNA aminoacylation. Predicted to be located in cytosol and nucleus. Predicted to be part of protein-containing complex. Predicted to be active in cytoplasm. Is expressed in several structures, including alimentary system; central nervous system; eye; genitourinary system; and skeleton. Human ortholog(s) of this gene implicated in distal hereditary motor neuronopathy type 9. Orthologous to human WARS1 (tryptophanyl-tRNA synthetase 1).

NR:

description
PREDICTED: tryptophan--tRNA ligase, cytoplasmic-like

GO: NA

KEGG:

id description
K01867 WARS, trpS; tryptophanyl-tRNA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000361 True 1666 mRNA 0.50 11 12423003 12428292

Neighbor

gene id symbol gene type direction distance location
AMCG00000360 slc25a29,LOC101165114 coding downstream 8197 12404604 ~ 12414806 (-)
AMCG00000348 degs2,LOC107697737,LOC107733197 coding downstream 43840 12366465 ~ 12379163 (-)
AMCG00000343 NA coding downstream 241541 12173635 ~ 12181462 (-)
AMCG00000341 NA coding downstream 261436 12159466 ~ 12161567 (-)
AMCG00000342 NA coding downstream 278353 12143523 ~ 12144650 (-)
AMCG00000362 NA coding upstream 32338 12460630 ~ 12471493 (-)
AMCG00000364 NA coding upstream 60891 12489183 ~ 12517199 (-)
AMCG00000363 NA coding upstream 120938 12549230 ~ 12554739 (-)
AMCG00000378 NA coding upstream 398301 12826593 ~ 12830150 (-)
AMCG00000379 LOC108411468,LOC106916349,LOC103155534,LOC102218377,LOC107100299,LOC103457917,LOC108257813,LOC107378076 coding upstream 404908 12833200 ~ 12847221 (-)
G149802 NA non-coding downstream 77293 12345409 ~ 12345710 (-)
G149801 NA non-coding downstream 118660 12304000 ~ 12304343 (-)
G149763 NA non-coding downstream 264532 12157749 ~ 12158471 (-)
G149756 NA non-coding downstream 324512 12090647 ~ 12098491 (-)
G149755 NA non-coding downstream 332737 12090007 ~ 12090266 (-)
G149942 dync1h1,LOC107568493 non-coding upstream 389488 12817780 ~ 12825281 (-)
G149994 NA non-coding upstream 514294 12942586 ~ 12946121 (-)
G149995 NA non-coding upstream 519024 12947316 ~ 12949350 (-)
G149996 NA non-coding upstream 521633 12949925 ~ 12950128 (-)
G150007 NA non-coding upstream 538668 12966960 ~ 12968715 (-)
G149751 NA other downstream 339789 12081543 ~ 12083214 (-)
AMCG00000336 NA other downstream 575055 11840480 ~ 11847948 (-)
AMCG00000334 NA other downstream 614178 11787089 ~ 11808825 (-)
AMCG00000300 NA other downstream 2364003 10029727 ~ 10059000 (-)
G149441 NA other downstream 2487453 9930970 ~ 9935550 (-)
G149847 NA other upstream 94228 12522520 ~ 12542310 (-)
G150138 NA other upstream 1395662 13823954 ~ 13826709 (-)
AMCG00000409 exoc5 other upstream 1574784 14003076 ~ 14028927 (-)
AMCG00000425 entpd5,LOC107586906,LOC105908609,LOC106571572,LOC106608092 other upstream 1817525 14245817 ~ 14261332 (-)
AMCG00000436 NA other upstream 2141670 14569962 ~ 14572432 (-)

Expression


Co-expression Network