AMCG00000379 (LOC108411468,LOC106916349,LOC103155534,LOC102218377,LOC107100299,LOC103457917,LOC108257813,LOC107378076)


Basic Information

Item Value
gene id AMCG00000379
gene name LOC108411468,LOC106916349,LOC103155534,LOC102218377,LOC107100299,LOC103457917,LOC108257813,LOC107378076
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 12833200 ~ 12847221 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000379
CCCATAGTGGCCTTTCTTCTAGTACTTTCTGAATGAGGGATTCTGGAAAGTCACCTCTCGGTATAAAAAGGATAACGCCACAAGAGCTCAGAGACATTAGAAAAGCTATAGCCAAGACAAGAAGAGGGGAGAACAACTAACAGAGCACTTCACAGCACATACCACGATGCCAGAGGAAGTGAAGAGCAATGTGGCCGCCCAGCCCATGGACGAGGAGCTGGAGACCTTTGCCTTCCAGGCAGAGATCGCCCAGCTCATGTCCCTGATCATCAACACCTTCTACTCCAACAAGGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCAGATGCTCTGGACAAGATTAGATATGAAAGTTTGACAGACCCCAGCAGGCTTGAGTCTTGTAAACAGCTGAAGATTGACATTATTCCCGACCCGCTGACTCGTACCCTGACTATCACCGACACCGGGATCGGCATGACCAAGGCCGACCTCATCAACAACCTGGGCACCATCGCCAAGTCAGGCACTAAGGCCTTCATGGAGGCCCTGCAGGCCGGCGCTGACATCTCCATGATCGGACAGTTTGGTGTGGGTTTCTATTCTGCCTACCTGGTGGCTGAAAAAGTGACCGTCATCACTAAGCACAATGATGATGAGCAGTATATCTGGGAATCTGCAGCTGGGGGCTCCTTCACTGTCAGAACTGACTCCAGTGAGCCCCTGGGTCGAGGCAGTAAAGTCATTCTATACCTCAAAGAGGACCAAGTGGAATATCTGGAGGAGAAACGCATCAAAGAGATTgatgaagagacagaaaaaaaggacGAGGCGGAGGGAGCCAAGGGGGACAAGCCTGAAATTGAGGACGTGGGCTCGGATGAGGATGAGGACAAGAAAGAAGGGAAGAacaagaggaagaagaagatcAAGGAAAAGTACATTGACGCCCAAGAGCTGAACAAGACCAAGCCCATCTGGACACGCAACCCCGATGACATCACAAACGAGGAATATGGCGAGTTCTACAAGAGCCTCACCAATGACTGGGAGGACCACCTGGCTGTAAAGCATTTCTCAGTGGAAGGCCAGCTGGAGTTCCGTGCCCTGTTGTTTGTCCCTAGAAGAGCCGGGTTTGACCTATTTGAGAACCGCAAGAAGAGGAACAACATCAAGCTGTATGTGCGCCGGGTGTTTATCATGGACAACTGCGAAGAGCTGATGCCCGATTACCTCAGTGTGGTGGACTCTGAAGACCTGCCCCTGAACATCTCCCGAGAGATGCTGCAGCAAAGCAAGATCCTGAAGGTGATCCGCAAGAACCTGGTGAAGAAATGCCTGGAGCTCTTCATTGAGCTGTCTGAGGACAAGGACAACTACAAGAAATTCTACGAGCAGTTCTCCAAGAACATCAAGCTTGGCATTCATGAAGACTCTCAGAACCGTAAGAAGCTCTCCGATTTGTTGCGATATTACACTTCTTCTTCAGCTGATGAAATGGTGTCACTGAAGGATTATGTTTCACGCATGAAGGACAACCAAAAACACATCTACTACATTACTGGTGAGACAAAGGACCAGGTGGCCAACTCTGCATTCGTGGAGCGTCTGCGCAACGCTGGCCTGGAGGTGATCTACATGATCGAGCCCATTGATGAGTACTGCGTCCAGCAGCTGAAGGAGTATGATGGGAAAAACTTGGTGTCGGTGACTAAAGAAGGTCTGGAGCTGCCCGAGGATGATGACGAGAAAAAGAagcaggaggagatgaagaATAAATTTGAAAACCTCTGCAAGATCATGAAGGACATCTTagacaaaaaaattgaaaagGCTCTGAGGGACAACTCAACCATGGGCTACATGACTGCCAAGAAGCACTTGGAGATTAACCCTGAGCACCCCATCGTTGAAACACTTAGACAGAAGGCAGAGGCTGACAAAAATGACAAAGCAGTAAAAGACCTGGTGATCCTGCTGTTTGAGACGGCACTGCTGTCCTCTGGCTTCACCCTGGAGGACCCACAGACGCACGCAAACCGCATCTACAGGATGATCAGGCTTGGCCTGGGAATTGACGATGATGAAACTATTACTGAAGATATCATTCAGCCCAGCGAGGAGGAGATGCCAGTCTTGGAGGGAGAGGATGACACATCCCGAATGGAGGAAATGCCTGAGGACACGCAGATCCACGATCAGCCCATGGACGAGGAGCTGGAGACCTTTGCCTTCCAGGCTGAGATTGCCCAGCTCATGTCCCTGATCATCAACACCTTCTACTCCAACAAAGAGATCTTCCTCAGGGAGCTCATCTCCAACTCCTCAGATGCTCTGGACAAAATCCGATATGAGAGTCTTACAGATCCAAGCAAGCTGGACTCTGGGAAAGACCTGAAGATAGAGCTCATACCGAACAAGCAGGACCGCACCCTGACTCTCTTCGACACCGGGATCGGCATGACCAAGGCTGACCTCATCAACAACCTGGGCACCATCGCCAAGTCGGGCACTAAGGCCTTCATGGAGGCCCTGCAGGCCGGCGCTGACATCTCCATGATCGGACAGTTTGGTGTGGGTTTCTATTCTGCCTATCTGGTGGCTGAAAAAGTGACCGTCATCACTAAGCACAACGATGATGAGCAGTATGCGTGGGAATCTTCTGCCGGGGGCTCCTTCACTGTCAGGGTTGACACAAGTGAGCCACTGGGCCGCGGCACAAAGGTGATCTTGCACTTGAAGGAAGACCAGTCTGAATACTTGGAGGAGAGGAGGATTAAAGAAATAGTGAAGAAACACTCTCAGTTCATTGGATACCCCATTACATTGTTTATGGAGAAGGAAAGAGACAAGGAGGTGAGCGACGACGAAGCGGAGGAGGAGAAGGAcaaggaggagaaagaggaggacaAGAACGAGGAGGACAAGCCCGAGATTGAGGACGTGGGCTCGGACGAGGAAGAGGATGAGAAGAAGTCTACtgacaagaaaaagaagaagaagaagatcaAGGAGAAGTACATTGATCAGGAGGAGCTGAACAAGACCAAGCCCATCTGGACACGCAACCCTGATGACATCACAACTGAGGAGCGTGCTCCCTTTGACCTCTTTGagaacaaaaagaagaagaacaacatCAAGCTGTATGTGCGCCGAGTCTTCATCATGGACAACTGTGATGAGTTGATCCCTGAGTATCTGAGTAACACCTACGGCTGGACTGCCAACATGGAGCGGATCATGAAAGCCCAGGCCCTGAGGGACAACTCAACCATGGGCTACATGGCTGCCAAGAAGCACTTAGAGATTAACCCTGAGCACCCCATCGTCGAGACACTCCGACAGAAGGCGGAGGCTGACAAAAATGACAAGTCTGTGAAAGACCTGGTGATCCTGCTGTTTGAGACGGCACTGCTGTCCTCTGGCTTCTCGCTAGACGACCCACAGACGCATGCAAACCGCATCTACAGGATGATCAAGCTTGGCCTGGGCATTGATGAAGATGACCTCTCCACAGAGGAGTCCAGCACTGCTCCCATTGAGGACATGCCGCCTCTAGAAGGAGAGGATGACACGTCCAGGATGGAAGAAGTTGACTAA

Function

NR:

description
PREDICTED: heat shock protein HSP 90-alpha 1

GO:

id name namespace
GO:0006950 response to stress biological_process
GO:0006457 protein folding biological_process
GO:0005524 ATP binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K04079 HSP90A, htpG; molecular chaperone HtpG

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000379 True 3586 mRNA 0.51 18 12833200 12847221

Neighbor

gene id symbol gene type direction distance location
AMCG00000378 NA coding downstream 3050 12826593 ~ 12830150 (-)
AMCG00000363 NA coding downstream 278461 12549230 ~ 12554739 (-)
AMCG00000364 NA coding downstream 316001 12489183 ~ 12517199 (-)
AMCG00000362 NA coding downstream 361707 12460630 ~ 12471493 (-)
AMCG00000361 wars,LOC107088075,LOC103399041 coding downstream 404908 12423003 ~ 12428292 (-)
AMCG00000374 NA coding upstream 38523 12885744 ~ 12896450 (-)
AMCG00000373 NA coding upstream 64951 12912172 ~ 12919957 (-)
AMCG00000372 pole2 coding upstream 74162 12921383 ~ 12932189 (-)
AMCG00000375 NA coding upstream 103654 12950875 ~ 12952176 (-)
AMCG00000371 NA coding upstream 107765 12954986 ~ 12964206 (-)
G149942 dync1h1,LOC107568493 non-coding downstream 7919 12817780 ~ 12825281 (-)
G149802 NA non-coding downstream 487490 12345409 ~ 12345710 (-)
G149801 NA non-coding downstream 528857 12304000 ~ 12304343 (-)
G149763 NA non-coding downstream 674729 12157749 ~ 12158471 (-)
G149756 NA non-coding downstream 734709 12090647 ~ 12098491 (-)
G149994 NA non-coding upstream 95365 12942586 ~ 12946121 (-)
G149995 NA non-coding upstream 100095 12947316 ~ 12949350 (-)
G149996 NA non-coding upstream 102704 12949925 ~ 12950128 (-)
G150007 NA non-coding upstream 119739 12966960 ~ 12968715 (-)
G150072 NA non-coding upstream 752613 13599834 ~ 13682131 (-)
G149847 NA other downstream 290890 12522520 ~ 12542310 (-)
G149751 NA other downstream 749986 12081543 ~ 12083214 (-)
AMCG00000336 NA other downstream 985252 11840480 ~ 11847948 (-)
AMCG00000334 NA other downstream 1024375 11787089 ~ 11808825 (-)
AMCG00000300 NA other downstream 2774200 10029727 ~ 10059000 (-)
G150138 NA other upstream 976733 13823954 ~ 13826709 (-)
AMCG00000409 exoc5 other upstream 1155855 14003076 ~ 14028927 (-)
AMCG00000425 entpd5,LOC107586906,LOC105908609,LOC106571572,LOC106608092 other upstream 1398596 14245817 ~ 14261332 (-)
AMCG00000436 NA other upstream 1722741 14569962 ~ 14572432 (-)
AMCG00000457 NA other upstream 2276804 15124025 ~ 15137923 (-)

Expression


Co-expression Network