AMCG00000390


Basic Information

Item Value
gene id AMCG00000390
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 13626383 ~ 13652135 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000390
ATGCTGAATAGAAAGGAAATTCAATATGAGCAGCATATGGTGCTCGACCGGTTCACCAGCCGCTTGACCCAGCTGAACGCCCTCTCTCACAGAGACATCCGCTCCCTCACCAAGTACCAGCTCATTCTGGCCCGGGACCAATTCAGGAACATCCCCCCCTCCCACATTGCGGGTGCCCAGCTTGGCATGTTGGAAGGGGACTTTGCCTTGTGTATCAGTTTGTATCATGGCTACGAGCTACTGCTGCAGATGGGGCTGCGCTCGCTGTTCCTCTTCATGCAGGGCATTATGGACGGGACCAAGGAGATGCCGAGGGCGAGGAATGAGCTGCAGCGCAACCAGGACTTCATGGAGCTGTATCGGGAAATGGAGGCCCTGTTTGTGAAACCCAGCAAGGGCCCGTCCACTGGACTGGATGAGCCGTTCATCTACAGCCACCCCAAACTGAGAAGACTGGAGGAGGTGGTGCTGGAGCATTTCAGGTCATGGTCAGAGCCCAAAGGGCCTGGCGGTTCAGAGGTGCCGTCCGATGGCGTGAGCACACGCGTGATGATCTTCTCCTCCTTCAGGGAGAGCGTGCAGGAGATCGCCACCATGCTGAACCGACACCTGCCCCTGGTCCGGGTCATGACCTTCATGGGCCAAGCGTCCGCAGGGAAGGGCGTGAGAGGCTTCACACAGAAAGAGCAGCTGGAGGTGGTGCGTAGATTCAGAGAAGGTGGCTTCAACACCCTGGTGTCCACATGTGTGGGGGAGGAGGGACTGGACATTGGCGAAGTGGACCTCATCGTATGCTTTGATGCCCAGAAGAGCCCAATCCGCCTGGTGCAGCGCATGGGCAGGACCGGGCGCAAGAGGCATGGCAGGATCGTAGTCATCCTGGCAGAAGGCCGAGAGGAAAGGACGTACAACCAAAGCCAGAGCAATAAAAGAAGTGTGTACAAGTCGATTTTGGGGAACAAGCAGGGCTTCCACATGTACCCCAACAGCCCCCGCATGTTGCCTGTGGGCGTGACGCCCGCTCTGCACAAGATGTTCATCACCAGCGGGCAGTTCGAGCACAAGGATACATCGCGCCGCTCCTCCAAGGGCAGGAGGGCAGACGCAGAGTCCTTTCTGTATCCGCGGGCACCGGGGGGCGGTGCGGGCCCTGTGAGGACAGATGGGCTCCTCAGCCCGGAGGAGTTTAGCATCTGGAGTTCCTCAATGCGCCTTGGGGAGGAGGAGCTGCGGCCCACAATGCCACACTCCCGCTTCCTGTCCATTGCAGATGAGGCTCCGCCCATGGAGGGCGTGTCAGCTGCCCGATCCCGGGAGATGTCCCTGTGGGAGTGGAGACACTGGCAGAACCGTCTGTTCCCCGTGTCTCGGGTTGACCACTCCAGCCGCTGCCAGCACTTCACCGAGATCATGGATCTCATTGACAGCATAAGGCAGGAGGACAAGGGAAGCTGTACTTACGAATTAGAGCTGATGCCATTTCTTCAGAAAGAGGATGTAATTGGCTATAAAGGGGATGGGGCTCTTTCTGAAGGTCTTTGTGGTCAGAACAACCTCAAGTTAAAGAGACCTAGACAACTGGGGTCTAATCTCAGACCTTTCGGCTCCAAGCAGAAACATTCCTCAAGCTCATCCTGCCTTGTAGGGGAGGTGGACAAAGATTTTGTGGTTCCAGGAGGGAGCTCATCAAAGAGAGCGACTTCCTCGTCCACATCTGAGTCACCAGGCACCTCGATGGTGAAGGATGGTGTCAGTGGACCCAAAGGCAATGGAGTCCAAGCAGACCTCTGTGAACTGCTACAAGCTGAGGCAGGCTCTGACATGGAAGTATATGATTATCTTGATGATGAATGTGTCATCATCACTGATGAGACAGAAGATCAGGTGGTCAAATCTGTAGCACAAAATGAGCTGAAGATTGACAATCCCAGCCCAAGTTCATCAGATCATATTAGTGCTGTGGAGTGTGATGTCTTCTGCCAGGCTGCAAAATTAAGCGCAGATACAGGCTACAGCAGTCAGGCAGAGGAAAGTTCTTCAGATTTGACAGGTATGTTTTATTTGCCAGAGGGCAGTATCATCTCAGAAACAAACCCTGCCAGAGAAATCCCAGATAATATAAGGATCATTTTGGCAAAAGTGCAAAACTTTCTGGCAAGGTCTCCTCCTAATGAATCTGACTTTGAATGTCCCTTGGAGCAGACAGAAGCCACTGTTCACCCTGAACACCAGCAGTGCCTCCCTTTCCAGATTAACTTTTCATTGGACGATGAGTTAGAATCTGAATGCGAGGAGGAAGACTCGAGCAGCAGCGTCTTGTCCAATAATGATATGGAATTCAAGCCTCAGGTTTCTCACCATGCACTGACCAAAGAAACACCTTTACTAGATAACAGCACCTCCAAGCATACTGTCAGTAGAGCCCTCAGTCCCAGTTGGGATGAAGTATTTGATGACATCACTGAGGAACCCTTGGGCCACGATGATGAGGATGcaggatgtggaaaaagtggACTGCTTCCCCAGCCTGACACTGTAGTTGATGAGAACAGTATCCACAGTCCTACAGGCAAGCTGGGGCACCAGAGCCGTATCTACCACAATCCACCCACTAAGATAGATGACAGCATGGACTTGTTTGAAGATGATGATCTCTTCCTGCATGTGAGCATCCCAGATCCTAGTGCCAGCATGACACAAAAACAGGAATGCCTTGCAGAGCCAGTGCAGGAGGTAGACAGAGCACAGAGGAATCCTGTGGCTCTTGGAGAACCAAAGGCACCCTTCCTCAGTCCTCTCTCGGATCAGCAGAAGTTGCCAGATGAGAAAGAGCGATACAATTGCTCAGAGGAGCTCTTCTCTGTGAACTTTGACCTGGGGTTTTCGCTTGAGGACTGTGAAGATGAACTCTCTGACGAGGACACTGCCTCTCGACACGAGGTGGAGTTGCCAGTCCACAGTACGGGGGCTTCCACTGGCGAAGGGGATGCAGAAACACATCTCCGAGCAGCAGAGAGTCTCGCATCTTCCCCAAAATCAAGGCCTGCAGTGGACCCCCACAGCAAAAAATTCTCAACACCTTTGGCTGGTCCATGTGACAGAAGGGTGCCTCCGATATTAAAGGAGCCCTCTTTGTTTTCACCCATTGCTCAGCCATTTGCTACCCCTGTCTCAGCAACACTCATATCACCAGCTGGGAGGCTGCAGAGAGCCCAGTCTGCCACTTTTTTGCCTGTCAATGATTCAGGAGGCATCAGCCTGATTGTGTCAGAGGAGAGCGAGCCGCTGTCTGACCAGGACTTCCAGGAGAGCTCGGTGAAGTGCCCCAGAGCGCCCCGGCCCAGGTCGCACACAGCGGGGGACCGAGTGCGCAGGCCCAAGGCAAAGGGCAGAGATGGTAGGAAGTTCCTAGACGAGGAGGCGGAGCTCTCGGAAGAAGGCGGGGCTCCTTCCTCAGATGAGGTCTTTGATTCGTCGGCCGAGCAGGACCACTCGCTAGGTGGCTTCGTGGTTGACAACGTCGCACCCTCGCAGGGCCTGGATGATTCCGATATGCATGGTGTCTATCTGAAGTCTGTGAGAAGCCCGGTTGTCCATAACAAGTATAAGATGGTTTATAAGCCCAGGCAAGACTTGGACATCTACTCTCAGGTGCCCGAGGCAGACGAGAGCTACATGGAGGACAGTTTCGTGGTGCAGGGTAGTGAGGAGGAAGGTGGTGCCAGCGGAGAGGACAGTGATGAAGAGGAGCTAGGTGGGGTGGAGTTGCTCCCTGAGGACTCCTTCATCGGGGGGAGGAAACTGTACCCCACGCGGCGACGGGTGCGGCTTCGAGAGGCCAGGGGAGCCAAAGGGCCCACGGCCGGGGCTGGGAAGAAAACCAAACCCTCCCGCATCATCATCCAGGACGACtccagtgaggaggaggaggaggagggcaggaGGAAGAGGGTGAAGGGAGACCCTAGTGAAAGCACTGCATCCCTCCACACGCAGGTCGAGACCCCCAGACTACAGAAGCCTGTCTTTAAGACGCCCCAGGCTGCAGCCCCCTTGGCCCTGCGCAAGGCTGGGCCGGGCCCAGCGGTTCTGGGGGCCTCCCTGGAGGAGCGGTGCCGGCAGCAGCTCAGCCTTCAAGCCTCCGTGTCCGAGGCCCTCGCCTTCCAGCACCCGGCCTCCACGGAGTCCAGGCCAGCAGGGGAACAGGCTGGACAGTGTGTCATCAGTCAGGCCACAGGGGGGCAGGACGTTGTCCATGCCCAGCACATGTGTGTGCTGGCGGACAGCCGGGGCATCGGGGGGGGGCCGGAGGTGCTGTCGGGGCTGCGGCTGCGGCACGGCGTGGCGGCGAAGGTCAGCTCGCTGGGCGCCTGTGACTTCATCGTCAGCAACAGGATGGCGGTGGAGAGGCAGACGCTCAGCGAGATCTCGAGCAGCACGAACCACGGCCGGCTGGTGGCCAGGATCCAGAGCCTGCAGAGCTGCTTCGACAGGGTGTGCCTCATCGTGGAGAAGGACCGCACCAAGCCAGGCGAGGTGTGGCGGCCGCCCCAGCGCTCTCGGTACTATGACAGCACGCTGGCGGCGCTGATCCGGGCCGGGGTGCGCCTCCTGTTCAGTGACGGAGCGGACGACACCGCCGCGCTGCTGGCCGAGCTTGCCCGGGTCGAGCAGAGGAAGAACTACGCCATCACGGTCCCCACAGAGGTCAAGGGTCACCGACAGCAATGCCTGCAGTTCTACCTCACCATACCTGGAGTCAGCTACGTCACTGCCCTCAACATGTGCCAGCGCTTCAGCTCTGTGTGGCACGTGGCAAACAGCTCTGTTGATGCCCTGGTGTCTGGCGCCTGCGTGAGTCAGCAGAAAGCCGAGGAAATCTACCGCTGCCTGCGCTACACCTACGACCCCCACATGCTGCCCAACCGGCCGGCCAGCAGTGCCAAGAAACGCAGCCTCAGTGCCACGCCGAGGGATAGCCGGTGAGGACTTTGGTGGATGTTGCCTTACTTATGTAACGCATCGTCAGGCTTGTACTGAGGATCATGTTACTTTATAAGGGCATAtcataacaaacacaaacctgcAAGTCAGCATTGGGGCATTTTGCACTTTCAAAAGTGATGCCTTTTCAGATATATTCATACAGACTGCTACCTCTGAAGACTAGGCTTAATGCTGCTGGGATTGTTTTCTCTCATAACCATGATGTGAACCCATTAACACAGTTCACACcaatacaaatcattacaaattcttattttttccttcaaagTGTAATTGACCTCATTCTTAATTTCAGAATCAATATAAGTGACTAATTATACTAACTTTATAAATGAgcagatacaaaatacaataaaaagc

Function

GO: NA

KEGG:

id description
K10896 FANCM; fanconi anemia group M protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000390 True 5367 mRNA 0.55 19 13626383 13652135

Neighbor

gene id symbol gene type direction distance location
AMCG00000389 NA coding downstream 18386 13604129 ~ 13607997 (-)
AMCG00000383 NA coding downstream 399948 13146530 ~ 13226435 (-)
AMCG00000382 NA coding downstream 479860 13137786 ~ 13146523 (-)
AMCG00000371 NA coding downstream 662177 12954986 ~ 12964206 (-)
AMCG00000375 NA coding downstream 674207 12950875 ~ 12952176 (-)
AMCG00000391 NA coding upstream 31892 13684027 ~ 13687008 (-)
AMCG00000400 NA coding upstream 39794 13691929 ~ 13693526 (-)
AMCG00000399 NA coding upstream 42543 13694678 ~ 13701429 (-)
AMCG00000398 NA coding upstream 55648 13707783 ~ 13729942 (-)
AMCG00000397 clg15h14orf28,LOC106581668,LOC106610876 coding upstream 94044 13746179 ~ 13752105 (-)
G150007 NA non-coding downstream 657668 12966960 ~ 12968715 (-)
G149996 NA non-coding downstream 676255 12949925 ~ 12950128 (-)
G149995 NA non-coding downstream 677033 12947316 ~ 12949350 (-)
G149994 NA non-coding downstream 680262 12942586 ~ 12946121 (-)
G149942 dync1h1,LOC107568493 non-coding downstream 801102 12817780 ~ 12825281 (-)
G150084 NA non-coding upstream 15427 13667562 ~ 13668139 (-)
G150086 NA non-coding upstream 35636 13687771 ~ 13688177 (-)
G150115 NA non-coding upstream 87661 13739796 ~ 13746130 (-)
G150119 arf6,arf6a,ARF6,arf6.2,LOC106608083,LOC105893149,LOC104956700 non-coding upstream 104381 13756516 ~ 13761597 (-)
G150219 NA non-coding upstream 499453 14151588 ~ 14153846 (-)
G149847 NA other downstream 1084073 12522520 ~ 12542310 (-)
G149751 NA other downstream 1543169 12081543 ~ 12083214 (-)
AMCG00000336 NA other downstream 1778435 11840480 ~ 11847948 (-)
AMCG00000334 NA other downstream 1817558 11787089 ~ 11808825 (-)
AMCG00000300 NA other downstream 3567383 10029727 ~ 10059000 (-)
G150138 NA other upstream 171819 13823954 ~ 13826709 (-)
AMCG00000409 exoc5 other upstream 350941 14003076 ~ 14028927 (-)
AMCG00000425 entpd5,LOC107586906,LOC105908609,LOC106571572,LOC106608092 other upstream 593682 14245817 ~ 14261332 (-)
AMCG00000436 NA other upstream 917827 14569962 ~ 14572432 (-)
AMCG00000457 NA other upstream 1471890 15124025 ~ 15137923 (-)

Expression


Co-expression Network