AMCG00000393 (otx2,LOC107085600,LOC108232166,LOC100707476,LOC107392362)


Basic Information

Item Value
gene id AMCG00000393
gene name otx2,LOC107085600,LOC108232166,LOC100707476,LOC107392362
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 13944859 ~ 13948608 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000393
gaacgaatgtgtttttgttctccGAGAAGGCGTGTTGCAATTATGGggtgtagcttttttttttttgaggggggggtggggggcacgTTTGTCAGGCAGAGTCTCGCTCAGTTCACGGGGACAGCTGGGGGTCCGGGGCCGCTTTAAGAGCAGTGGACGAGCAGGACGACGCTCATTCTTAACTGAGGTTTAGCTGCTACAGGAGCCCATCAAACCAGTAGGCGAGAGATATAAAGCAGTGCAGCCCATTCCGCTCACCAACAGCCTCTGTCCTTGTGTTTAGGTTTGTGGACCAGGTATAAAGTGCCATCCAGCCGGGGCCAGAAAGGACAAAATCCGACCAAGGACTACGAGGGGCCTGCTGTTCAATTTTCACCATTTTTGCCAACTTTGCCCTCCAGCCCAACTTTAGCATGATGTCGTATCTTAAGCAACCACCTTACACAGTCAATGGACTGAGTCTAACTACCTCCGGGATGGACCTCCTTCATCCGTCGGTGGGCTACCCAGCAACGCCTCGGAAGCAGAGACGGGAGCGGACTACTTTCACCCGCGCCCAGCTCGACGTCCTGGAAGCGCTGTTCGCCAAGACCCGCTACCCGGACATCTTCATGCGGGAGGAGGTGGCGCTGAAGATCAACCTGCCCGAGTCGCGGGTGCAGGTCTGGTTTAAGAACAGGAGGGCGAAGTGtcgccagcagcagcagcagcagcagaacgGAGGCCAGAACAAGGTCAGGCCGGCCAAGAAGAAGAGCTCTCCGGCCAGAGAGGCGAGCTCCGAGAGCGGGGCGAGCGGCCAGTTCACCCCGCCTTCCAGCACCTCGGTCCCGGCCATCTCAAGCAGCAGCGCGCCGGTGTCGATCTGGAGCCCGGCCTCCATCTCTCCACTGTCCGACCCTCTGTCTACCTCTTCCTCCTGCATGCAAAGATCCTACCCGATGACCTACACTCAGGCGTCAGGATACAGCCAAGGCTACGCCGGATCTACTTCCTACTTTGGCGGGATGGACTGTGGGTCTTATCTCACCCCCATGCACCACCAGCTGCCCGGGCCCGGCTCCACACTGAGCCCCATGAGCACCAATGCGGTGACCAGCCACCTCAACCAATCCCCGGCTTCCCTCTCCGCCCAGGGCTACGGGGCTTCGGGGATAGGGTTCAACTCGACCGCGGATTGCTTGGATTATAAGGACCAAGCGGCCTCCTGGAAGCTGAACTTCAATGCTGATTGCTTGGATTACAAAGATCAGACCTCGTCGTGGAAATTCCAGGTTTTGTGAAATGAAACGCgaacaataatataaacaatacaaatcaaataaaaaacatatagtCCTGCCATCCTCCAACAGACATGCGCGTAAAAAAGACTGACCATTCTGAGATATAGCCAGGTGTTGGATGGCGGATGCGGTCTCAGTCGTGGCCCCTTTCCCCGCACACTTCTTGGTCCCActctggggagaaaaaaaaaggtattagATCATCCCAATACTGGTcgtggactttttttttctttgcattaacCGTGCAGGGCGCAAACAGACAACCACCTCcccgtgtgtgtgcgtgtgtgtctgtctgtctgtgcgtgtctgtctgtctgcaaacGACACCTGTTGGTTAATTTAAGGAAAACTCGGAGTGAACTCTTCCTAACTTTGATCAATGCCACGGAACAAATCGTtatccgagagagagagagagagagagagagaagaaaaataaatcaagagtCAATCCTTGGTTAAGTGCTTGGAATGGGCAGCTCCTTAAGCTCCTTCAAACTTGCCGACCTACTTCCAGGTTGGCCAACCGAGAGACCCTTTGATCAGGACGGTGTGTGGACTGCGAGCCCCCGAGGCGACCTGGATGCACTactttatttaagaaaaaaaaattaataataatgtttataagGAATCAATATGTAGTTTTTAAGAGACAATCAGTGTGTGTCTTATATAAATGGtacatatgtgttttttatCTGTGCTAGCCTTCGAAACTGTGATCTGTTGTATTGTATGCAATTTGTGAGCGCCTTTGCATCAGCGAGGCTGCTCTGCTGTGATTTTAATAGGTTTATAACTTTTggaacaaggaaaaaaaaaagtattaataatgagaaaatacaataaaaataataatgattaaattagATCCTCCCGACTACCCCAAACCTAAAACCGGAGAGGGTCGGTGTATGGAGGAGAAAACTTCATTGCAAACCCACTTTCCATTCCCGCCGCCTCTCCTGTGAATATCTTGAATAATATCATGGACCTTAGTACGGCTTGAGTGGTGGTCCTGTGAGCCGCCAGTGCACCGAAACAGTGGACACTAATAAAGGTCAATTGATCTGACCCTTGATGCGAtgactatttaattaaaactggattttttttgtgtgtttgcaaaTGTTGatagaatattatatataagtatatatatgcataaacGTCAGCCTTGAATTTCGCACATCTGTATGACTACATTAAAGTCGTTCTAGCACAAATCCAGTTGTCTTCCGCTCTTCCTGAATATAGCCCCAGGCactgcaaagaaataaagattCAAAGTGGAAAATAATTATCTACAATTATCTGGTGTTTTGAGATGGAGTGTAACACGATTAACTAGCCTATAATGTTAAAG

Function

symbol description
otx2 Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in neuron differentiation; positive regulation of transcription by RNA polymerase II; and protein-containing complex assembly. Located in growth cone and nucleus. Part of protein-containing complex. Implicated in panhypopituitarism and syndromic microphthalmia 5.

NR:

description
PREDICTED: homeobox protein OTX2 isoform X2

GO:

id name namespace
GO:0097306 cellular response to alcohol biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0003406 retinal pigment epithelium development biological_process
GO:0030901 midbrain development biological_process
GO:0030902 hindbrain development biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K18490 OTX2; homeobox protein OTX2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000393 True 2661 mRNA 0.49 3 13944859 13948608

Neighbor

gene id symbol gene type direction distance location
AMCG00000405 NA coding downstream 151889 13790666 ~ 13792970 (-)
AMCG00000397 clg15h14orf28,LOC106581668,LOC106610876 coding downstream 192754 13746179 ~ 13752105 (-)
AMCG00000398 NA coding downstream 214917 13707783 ~ 13729942 (-)
AMCG00000399 NA coding downstream 243430 13694678 ~ 13701429 (-)
AMCG00000400 NA coding downstream 251333 13691929 ~ 13693526 (-)
AMCG00000408 slc35f4,LOC106593636 coding upstream 105745 14054353 ~ 14061825 (-)
AMCG00000414 NA coding upstream 133893 14082501 ~ 14093284 (-)
AMCG00000413 NA coding upstream 217273 14165881 ~ 14167002 (-)
AMCG00000428 NA coding upstream 264061 14212669 ~ 14214918 (-)
AMCG00000427 NA coding upstream 282111 14230719 ~ 14235167 (-)
G150119 arf6,arf6a,ARF6,arf6.2,LOC106608083,LOC105893149,LOC104956700 non-coding downstream 183262 13756516 ~ 13761597 (-)
G150115 NA non-coding downstream 198729 13739796 ~ 13746130 (-)
G150086 NA non-coding downstream 256682 13687771 ~ 13688177 (-)
G150084 NA non-coding downstream 276720 13667562 ~ 13668139 (-)
G150083 LOC100846954,LOC107575789 non-coding downstream 294854 13649393 ~ 13650005 (-)
G150219 NA non-coding upstream 202980 14151588 ~ 14153846 (-)
G150306 NA non-coding upstream 546851 14495459 ~ 14495660 (-)
G150427 NA non-coding upstream 941926 14890534 ~ 14891706 (-)
G150476 NA non-coding upstream 1280289 15228897 ~ 15229292 (-)
G150485 NA non-coding upstream 1302017 15250625 ~ 15250829 (-)
G150138 NA other downstream 118150 13823954 ~ 13826709 (-)
G149847 NA other downstream 1402549 12522520 ~ 12542310 (-)
G149751 NA other downstream 1861645 12081543 ~ 12083214 (-)
AMCG00000336 NA other downstream 2096911 11840480 ~ 11847948 (-)
AMCG00000334 NA other downstream 2136034 11787089 ~ 11808825 (-)
AMCG00000409 exoc5 other upstream 54468 14003076 ~ 14028927 (-)
AMCG00000425 entpd5,LOC107586906,LOC105908609,LOC106571572,LOC106608092 other upstream 297209 14245817 ~ 14261332 (-)
AMCG00000436 NA other upstream 621354 14569962 ~ 14572432 (-)
AMCG00000457 NA other upstream 1175417 15124025 ~ 15137923 (-)
AMCG00000464 batf other upstream 1264794 15213402 ~ 15222743 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000315_00580737_00582649 OTX2.S, OTX2, OTX2.L coding CI01000315 null 580679 ~ 585492 (-)