AMCG00000397 (clg15h14orf28,LOC106581668,LOC106610876)


Basic Information

Item Value
gene id AMCG00000397
gene name clg15h14orf28,LOC106581668,LOC106610876
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 13746179 ~ 13752105 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000397
agagagagagagagagagagagagagagagagagagagactcacacAATAACAAAGCCAGTTCCGTGTGTGACAGGCAGGGACGAGGGCGGTTTAGGTCACACGAAACGACAACGACAAAAACACCAGAGAGCTGCAAGAAGACCCGGGCGACAGGCCGACGTGGAGACATGAGGAAACCCAGAAGACGATGGAGAGTAAATCCTACTCGGTGAAATACACACAAGACCTGAAGAGCCTGtacgcacacgcacacggcACGCAATATGAGCGgACAAAGACTTTGTTTGAAGAAATCCGTGCCTCAGTCAACAATAATGATAACCAGGACCGGTCCTTCTGGAGACCCGTGCTTCCCTGGGGTGGGGTCTACACTATCAAGGCTGGGCGGAAAGCCATCTCCTGCACCCCCCTGTACGTCAAGATTAACCTGAAGAACACGTGCACCATCGACGGCTTCCTTATGCTGCTCTACGTCATCCTGCGGGAGAACCAGACCTTCCCCAGAGAGGTGTCCATCTACCTGGGGAAGGAGTTCGTCAATCACTTCTTGTACCTGATGGATTCCTACAACTACACCACGGTGAAGCTGTTGTGGATCTGGGACAAGATGGAGAAGCGGCAGTACCGATCGGAGATCCACAAGGCTGCGCTGGAGATCGACCTGTTCGGGAACGAGCACGAGAACTTCACCAAGAACCTGGAGAACCTCATGTCCACCATTCAGGAGAGCTACTGCACCAGCTGGAACTGTCCTGCCCGCTTCCAGGAGTTCATCCAGAGGACAATAAACATTAACCCTCCACATGAATTGCCTCACAGAGACCTCATTCAGTCAGCAGTGGATGAGTTCTTCTGTCCCAAGATAGTGCTCTGTGAGGAATTGGGGTGTGACGGGCTGAGGGAGTTCTCTCCCAGGGAGTTCTGCCACGGAGCCCCCCCCTTCGTCATCCTAAACATGCAGCTGTGGAAGTCCGAGGAGCTGGCGTACGTGCCCTACCACCTGGCACTGTCTGAGCACAGGTATTTACTAGAAGGAGCCACACTCTTCAACAAGGAGGAGCACCATTACTCGGCCGCGTTCCAGATCGACGGCTATTGGATGCACTACGACGGGCTGAGGAATGACAACCTCATCCTGCTGAACAAGCCGccggagctgctgctgctgtcctcactGGTCTATATCCGCGCCCCTGAGAAGTGAGCGCGCCGGGCGGCGGGCGGGAGAGGAGGCAAAGGGAACAAAGGGTGTTGTTACAAACCAAGGagtttctatattttttaaaaagggggtTAAATGTATACCTTTTATAAGAGAGAACCAGCCTAAATTTGTTCATTCACTTAAGTTGACGcagttaatgttttattccGTTATACTTTCTCactagggccctgtgttttgcgTAGTTTGCCACAGCAATTGAATGCACAAATCACACAAACCACATGGCCCTCTTTATCACAGTATTGTCTTACCCTTTGTGTTGTAGTTATTTAGCACTGATGAATTGGGACGAGTTCAAGTCAGTATTTTATTtgaccacaaacaaacaaaaataaaaacctaggTGTGCGtttgtatataatattgtcAAATGACAATATCTGGCACAGAAGTACAGCcctaaatattttgttaatggtAGCTTTACTGTGCTTTGTTGTCTGTATACCAAAAGTTAACCCACTTATTTAAACAACGCCTGGGTTTAGGTTTAAGTGAATAGAGCCCTATTCTGCCAGTCTGCAGTTATTCGAAAATAGTACTCGGCTTGCAAATTTGCAGAgcttttgaaaaaatgttttggctTGCTTGGAATCCAAGAATATATCCCTGGACTATAATAGTTctgatttcagatttaattaaaaggtgCTTTATGGGACGCTTGCAGAAGGAGGTGGCGAGAGTTGCTCTGTAACGGTGTCAAACCAGTGTGGTGACCAGCTCTGTGGTGTTTGGTATTTGGGAAAGATAATATTTTATTCTCGAGCGTCAAGATTTAGTCTGTGTTTCACCTGTGTGGGTTTCTAGTTCCTCAATGTGCATTTCTGTGACTTCCAAACATTCGTCGGAGGAATAGTCTACCTGATGTTGTGTCTGAACTGATGGATGTGGCTCTTTAAAGATAAGGAGacttatttaaatagtttcccAGTTCAAGGGAAGCAGATAAGAGACATATTTGCTCTTAGATTCGAAACTCGATTTAGATTGCTGGAGGCTATTCAGTTCTGAGCTGGTTATTGTGAATGAAGACGGGAGCTAAGAAGAGAAATGCCCATCGGTACTTTGTGGTTCTTCCCGGACACGCATGGAACTTGGGCTTCTCCACATCACATCTCGGTAAAGACCGGAGAATCAGAGGACGGATGcactttgtctttctctctaAAGCGAATCTTAGCCCTCAAACCATTGTTCTGCAGTCTTGCACAGATGTTAATTCCTTAATACATGTCACCCAGTAAGGATCACAAAGGAGTAACTTGTACAGGTGCGGTGCTTTAGAAGGATGCTTGCCCATATCTGCAGCAAAAATAGCAATGACTTATTACTGCTTTTACCGAATGAAGATTTAAGACGTGATCTCTAGGGTGCCAAAGTGATATTTGCTTGGAGGACTCCGCTAGGGGAAGCCAGAAGCCATGTTGACTTGCTTTCCACTCCGTTATGCGGGTGTTAGTTCTAGCAGGGTACGTAGAAGACGTTTTGgacgttttattttttccaggtATTCTTTTGGAGATAGATTGTATAGATTCATAGGTAAACAAAATAAGGATCAGGTGTTAAGTAGTGTCCATTAGGTGAACTAGTGTTCTGTTTGTACATGTTAACAAGCACAAGACAACCGGGGTGTTTGACTTTATCAAAGCAGTGCAGAACATAATGGAGTTTTTAGTCGTTTAAGTGAGGAGATGTATTTTGTGCACCAGCTATCAAAATAGATAAGAGGGTCATTCTTGAGCCTTTTATTGACATATGATTCTTCACAACATTGTCCCAGCTAGGCTTCCATAGTAAACTCTCGAAGGAggggaaacattttaatacatttttctgattttatcTGAAGTAATCTTTCACTGAATCAATGATTGGGAGGATTTTAACACTAGCAACACTATGGTTTCTTAACCTCTTCgcattaatattttgtaagctCATCTTAATATTTACAGATCatgaatgtttttgaaatgttcatCATAACCTGTACAGGGGTTCATTTCCCATTCCATATTTTCATATcttgaatacaaatacatactgtaATTGTTAATTGAACTTAGCACTGTTTCATGTTTATAATCAGAAACTTGTTTTACAGTCAACCCCCAACTAtgcagttatttatatattttgttttgtaaaaagggaaaatatttttgtattcaaatattgACCATAATAAACTTGTTTAAAGCGACTCCTTTTTCTGGACAGTACTTGGTCTATAGTGAGAGACATTTTAatatgaag

Function

NR:

description
PREDICTED: uncharacterized protein C14orf28 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000397 True 3492 mRNA 0.44 5 13746179 13752105

Neighbor

gene id symbol gene type direction distance location
AMCG00000398 NA coding downstream 16237 13707783 ~ 13729942 (-)
AMCG00000399 NA coding downstream 44750 13694678 ~ 13701429 (-)
AMCG00000400 NA coding downstream 52653 13691929 ~ 13693526 (-)
AMCG00000391 NA coding downstream 59171 13684027 ~ 13687008 (-)
AMCG00000390 NA coding downstream 94044 13626383 ~ 13652135 (-)
AMCG00000405 NA coding upstream 38561 13790666 ~ 13792970 (-)
AMCG00000393 otx2,LOC107085600,LOC108232166,LOC100707476,LOC107392362 coding upstream 192754 13944859 ~ 13948608 (-)
AMCG00000408 slc35f4,LOC106593636 coding upstream 302248 14054353 ~ 14061825 (-)
AMCG00000414 NA coding upstream 330396 14082501 ~ 14093284 (-)
AMCG00000413 NA coding upstream 413776 14165881 ~ 14167002 (-)
G150115 NA non-coding downstream 49 13739796 ~ 13746130 (-)
G150086 NA non-coding downstream 58002 13687771 ~ 13688177 (-)
G150072 NA non-coding downstream 64048 13599834 ~ 13682131 (-)
G150084 NA non-coding downstream 78040 13667562 ~ 13668139 (-)
G150083 LOC100846954,LOC107575789 non-coding downstream 96174 13649393 ~ 13650005 (-)
G150119 arf6,arf6a,ARF6,arf6.2,LOC106608083,LOC105893149,LOC104956700 non-coding upstream 4411 13756516 ~ 13761597 (-)
G150219 NA non-coding upstream 399483 14151588 ~ 14153846 (-)
G150306 NA non-coding upstream 743354 14495459 ~ 14495660 (-)
G150427 NA non-coding upstream 1138429 14890534 ~ 14891706 (-)
G150476 NA non-coding upstream 1476792 15228897 ~ 15229292 (-)
G149847 NA other downstream 1203869 12522520 ~ 12542310 (-)
G149751 NA other downstream 1662965 12081543 ~ 12083214 (-)
AMCG00000336 NA other downstream 1898231 11840480 ~ 11847948 (-)
AMCG00000334 NA other downstream 1937354 11787089 ~ 11808825 (-)
AMCG00000300 NA other downstream 3687179 10029727 ~ 10059000 (-)
G150138 NA other upstream 71849 13823954 ~ 13826709 (-)
AMCG00000409 exoc5 other upstream 250971 14003076 ~ 14028927 (-)
AMCG00000425 entpd5,LOC107586906,LOC105908609,LOC106571572,LOC106608092 other upstream 493712 14245817 ~ 14261332 (-)
AMCG00000436 NA other upstream 817857 14569962 ~ 14572432 (-)
AMCG00000457 NA other upstream 1371920 15124025 ~ 15137923 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_011147 C17H14orf28 coding NC_007128.7 CM002901.2 584369 ~ 589773 (+)