AMCG00000398


Basic Information

Item Value
gene id AMCG00000398
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 13707783 ~ 13729942 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000398
GGTTGCTGTGGGATAGCAACAGTGCAGCCAGCGCTCTTTGCATTTCGGAAATGTTGCGGCGCTGGATGGTCACAGTCTGTAGAGGGATGAAGAACGCACTGAACATTGGCCATCGGAACCATTTTGATTTTAGACTCTGGATTTGGTAACCGACCTTCTCCTTATCTTTACAAGTACTTGTTTAGACTTTTCTTTCTGCTGTGAACTGGTTATATTAGACAACGTTTTAAATACGCGGCGTTACCGACTGGTGCGCTGGCCAAGTTAGCTTAAAATCAAATCAGTCTCGTCTAGCCTATGGCTTCAAATTCAACAAATTACAGAGGAAAGACGACCATTCATAAATGTCAAATCAGGATAGCGGAAAAACAGTACTAGTACTTCCAGCGCTGCCGCCAGGCAAGACTCGGGCACCCTTTGGCACCCCCTCGTTCAGGAGCAGACGGACTCCTTGTCCCATTGGAGAAGATGCCATCCTTGAACTTTTGCAAAGTCGCAAAGCGAGCAGGCGCATCGAAGCTGTCCGGCAAATCCGTGCACATCTGCGGGTAAACGCCGGCAAACTGCTGTATGCCAACAAGGCAGATGTGCTCGAAGCTATTAAAAGGGTTTTTCAAATCGATAAAAGAGAAGATGTCAGCAATGCCTGCACACAGCTCGTGTTGGAAATAGTTGCGCTCCCGGATGATGATCTGCACTGCTTCAGGGCACAGATTTTGCAGGAGCTGCTGTGTGAACTGGGCAGTGTTACCCCGGCCGTGCGCAGATGTGTGCTGCAGACTCTGCACAAGTTTCTCCACAACAGGCGCAGCCCCGATAAGCTCTTCCTCGGTGTAACTAGACCCGAAGTGGAAAACCAAGATGGTAGCGTGAGGGCGGCCACGTTTGCCATTCTTGCGGTCCTGTTCAGCCTAGAGTCCCAAAACATTGACTTCTATGACTTGATTGCATTCCTGACCATAAAACTGCACGTCTGCGCTGAGACGGACGACCCCCTTCTGCCATACATCACCTTGGAGCACATCAGGCGGCACCTTGGAGAGGAGACGTACAACTCCTACATTGAGCGCTTGCCACGGTCTCTAAGGAGGCTGCACAAGCACTTTGTACAGGACCACTCTGTGTTCATTTCCAATCGGGGGCTCCAGGGTGAGCTTCAGTGTCCACAGCCACACCAGGATGTTCAGCCATCCCCTCGCAGGCCGAAAGTCTTGCCGAAACTGGTTCCAGAAAACAGGCGCTACCATTTACCTTGTGTGACTGGCGCACTAGTCCTCTACCCTGCCACCATGAAGTTTGGATTGATACCCCACGAGTTACATGAGCGCCTTCTGGACAGCAAAAACTACCAGAGCCGGACCCACGGGGTGGATGAGCTGAAGAGCATCATCTACGACCTGGACATAGACCCAGTGCCTCCTGAAAACATTATTGATTTCATCAGTTTCACACGGACACTATTGGAAGACAGCAATTTTAAAGTCTTGTGTGGCACTCTAGAAGTCCTCAACTTGGTCATTGAGAAGTTGGGATACAGTGTGGAAACCTATCTGAAGAACTTCGTTTCTGCTGTGGCTAAAGTCCTGGGCGATACCCGCGCCGTTACCAGGAATGAATACATGAAAGTTTACATGCAGCTCATGAGGATTGTGGGGCCGCAGAAAGTGCTGGATCTTTTGATCGTATACCTCAAGCATAAAAACTCCCGAGTCAGGGAGGATGTCGTTAACATTATCACCGCTTCCATTCTGACCCACCCAAGAAGGGACTTGGATATAAAACAtctgtgcatcagtgtgtcTCCTTGTCTGGCCGACAACAAAAGGAAAGTCCGCCACGCCGCCCTGGAGCTTTTCGCCTTGTTTGCGCACTCCATGGGTTCTGGCAAAACGCAGCCTCTGGTGAAGGCTGTGGACATGGTGGAGCTAAATGGAAACGTGGAGGGTCTGATGGCAGCCGTCCAAGCCCGGATTGCAAGACACAGCCTCCCCAAACTGACCCCGGACGGTATGGTGGAATATGCACTGACTATCCCCAAGCCGGGCCAGCGACGGGGACCCCAGTTCGGCTCTGGAGCTGATGTGGAGTGGTTGATGGCCGGGGGGCGCATCCAGAGTGCCCAGAGCCACTTGTCGGAGTCGGACCGGGAGCCGCTGTGGACCGAAGCCGAGGAGATCTCTGTGAACAAGCGGATCATCAGTGCTGGAAAAGGCAAGAATAAGCTGCCGTGGGAAAAGGACAGCCTTCCCGCAACAGGAATGTCCCCGACAGACACCAAGTCCACTCCTGGGGTTTTCAATGTGGATTTTCAATCTACTAAACTCACAACCTCCTCTCAAATACGAGATAAGGACGACTTGTTTGTAACTGGAAAAGCAGGAGAGAAATCTGCCAAGCTGGATAGCTCTGAGCCCCACCAGCCCCGGATCTCAGGGAAGAAAGGCCTCCAGGAAATGTCCCGGAAGAGCGGCAGCGTCGACTCTGATCTGCAGCTCCTCGAAGGGTCCAACTCTTCCcgcagagagagagTGCCAGTTCACGGCAGCACCACTTTGTCTGCCAAGACCGCGCGCTCTCTCTTCGGACATCACAGTGTTGAGCGCACCCTCTCCTTACCCTCCAACCCTGCGACTCAGGGCATCCTCATCCTGCCCTCTTATCCCCTTGCGTCCCCTACTGGGGGGAGGCAGAACTCCCCGCCGCTTCACAGGACAGTAGACGCGGCTGTCCACATGTCCGGCGCCAGGCTGTGTCCTTCCACCTCCCGCCGTGGCCTCGTTGGGGCCAGGCCTGTGCCTCCTATCCCTCGCGGCACAAACTCCTTGCCCAGGGACCACACGATGGCCGGCCACCCACTGACTCCCTTGGAGAAGTCAGCGGAGAGGAATCTTCAGCTGGATCTGTCCGAGCTCACGACTAAGGACAAGGATCACGAGGAGATGGCTATCTCTCTCCAGTCGCTGAGGAACAGTGCGGCGAAGAAGAGAGCGAAGCTGAGTGGTTCCGACCCGGACCCCGATAGTCCTGACTCGGCCGTCAAGCTGGAGCCGAGTCTGGACTCGTCCTCGCTCACCTCGCCCTCTGTCGGCAGTCCTCTGAGCGAGAGTGGACTGTCCAGCCTGCAGGACTCGCTCTGCTCACCCACAAACACCTTTCCCAGCGGCAACAAGTCCGGGAGCTCCATTAACGTGGCTACGAAGCCTCGCCTGGTGAGACTCTCCTCTGCCAAGCTGAAGGCAGCAGGCCCTCTTGAGTGCAGCCCCAACCAAGGGGGTTTGCTCCAGGACAGGGTAACCTCGGATGTGAGTGTGGTGGGCCAACGTCTCCCCTATTCTAACGGGACAATTGAAACGGAGGAGGACAAGCAGAGAGGGGCAATTTCGCCCTCTGCCAGGACACTGGTCCGAGAGCCCCCTAGAGCTCCCAAACCCCCCAGGGGACCACCACCATCCGGTACGAACGGATCTTCCCCTGTCAGCGGCATGAGTGAAGGCATTGTGGGCAGAGGAGTGTTCGGGCATTCCAGCCCACTCTCCCGTCAGATGTCCTCTCCGGAGCATGGAGACGGTCTTAGCAAGCGCAGCACTGAGCTGTCGGTCTCCATGTACCCAGAGACCGTCCAGCACAAGGACCCCAATCCCCCCGAGGACAATGAGGAGCCTGTGGGGACTAAAGTTAAGCTGTCCAAGTCGGCCCGGGACAAAATGAGGATGCGTCACCTGGAGGAGCAGAAGCACTTCAGCCTCCAGAAGGAGATGAAGAAGATGGAGAACAGTCAGCAAAGCTTGCGCATGATCATCGGGGAAATGTCTTCAGAGGACCCCGTGTATCTCACCGCGTCACCTCCAGATACGCCTCACAGTGCAGGTCGGAGTGTGAATGGCAATGTTCGCAATTCCATGGTTGCCTCTCGGAAGGTCGGCCATGTTGCCAGCTCCCCTCTATCCCCTACTAGATTCCCTGCAATCCCCAGCCCACAGCCTCCTCGTATCAAGAGGGCCACCAGCTTGAAGAAGGCTCGCTCCAGACTCTCACACAGCTCAGATGAGCTGTCGGCTGGCTCTGGAGCCCAGAAGGACGGCCCTGAGGCTCCCGAGTTGAGGCCCTTTTCCAAGCCTGACGTGGCTCTGAGCCAGGTGTTCGAGCTGCTGGAATCGGATGACTGGCAGAAGAACATTGAAGGCGTGACTTTTGTGAGGACCCTGTCACTTTATCACACCGATGTCCTGGTGACCCGACTCCACGAAGTCTGCCTGGCTGTCATAAAGCAGGTGAAGAATCTGCGATCGGGTGTGTCACGGATGGCACTAGTGTGTCTGGGAGACCTGTTCGCCAATCTGCAGAGGGGGATGGACCAGCAGCTGGATGAGGCAGTGAGGGTGCTGCTGCAGAAAGCTGCAGAAGCCAACGCCTTTATCCGGCAGGATGTGGACAATGCGCTGGACAGCATGGTGCAGAACTGCAACCCCATCCGTGCCCTCAACGCTCTTCTCAGCGGGGGTCTGAGTCATCTGAACTCCTCGGTGAGGAAGTGTATGGCCCAGCACTTGGCTACCTTGGTGGAGAAGATGGGCTCAAACCGTCTGCTGTCGGGCACTAAGGACGTCACCGACCGTTTCCTGCCTGCCGTTGCTAAGCTGTCACAGGACTCCTCTCAGGAGACCCGATACCATGCGCGGCGGATGTTGCATTCAGTCATGTTCCACGAGAAATTTGACCGACTGATTGAAAAGAACTTGCTGGCTAATGATTTGGCCCATGTCCAGGATACTGTCAACAGCCTCCGATCAAAGGGTTTGGGAGATATGCCCCTTGATGCCTCCTCGGCTAGGGGTCGGCGTTCTCTTCCTGGCAGTGGCACAATGCGGGCATCATCACTGACCCGTGAGCCACGCTCCACTTCTGCCAGAGAGACAGGGGAGGGCACCTTAAAGGGCACCCCACGCAACCTGAGGAACAAGACTGAATACATCAAGCAGCTGACAGGTCTGCTCAATTCAAAAGACTTCCGGGATCGCATCAAGGGCATCGACCAGTTGGTCACCGACTGTCAGCAGCACCCAGATGTGATCATCTCCAACATCTTCCCGGTTTTTGACGCTTTTACAGCCCGCCTCCAAGACTCCAACAGCAAAGTCACTCTGCACGCCCTGGAGTCCCTGCAGACGATGGCCACGCTGCTGAAGGACGGCCTGTCGGAAGTGGTCTATATCGTGGTGCCGGCTCTTGTGGAGAACAACTTGAACTCCAAGAACAATTCCATCTACAAAGCAGCCGCCGATGCGGTCCAGGCTCTCATGCAGAATCTGGACAACACCCTGCTTCTCCAGCCGTTCTGCACCAAGGCCAAGTTCCTCAACGGCAAGGTCAAAGTTGACTTGATCGAGTGTGTTGCAGACCTAGTGGCTGAGCTGTATCCTAGGAAGCcacaggtggtggagcagaAGGTCTTGCCCCTGCTATGGCACCTCCTGGGCAGCTCTACTGGCAGCGGCACCGTTCTGGGGCGGGGCGGCAGCTCCCGGACCGCTACTGCCAAACTGTGCCAAGTCCTGCACGATCACATGGGCGAACGCCTTGCCGAACTCGGGGGAAACCAGCCCCTGCACATCACAAAGAGCCTCAATGAGGTGCTCACAAACCTCCCCTCCTAACAGCACTCATGGGCGCAACATGAAACAATCTCGAAGACTGGACGGAAATGAGTCAATTGAAATCCATTTTTTAGGCCTCCGTGGATTTCAGGTGTCACGGTTTGAGGGAGCATGCGATTGGCCTGCTGACTGCGGGAATGTACTTTAGAGTGGCCTTTCATTGTCAGCTCATGAACATctgaccaacactttacatgatgcgtttgtttttgttcactaTTTAGATGGATTATCAGTTGCATGCATGTGTCATCAGTGAATGTGCGCAATCCGGTTGCAAAACATTCAGCACTCTGCCTTTGAATGTATTGGCAGGGACACCTCACCTCAAGCcagtctaaaataaaaaaatacaatattagaCAAAGTATTGCTGTGCAGTTGGGTGTCAGAATGAGAAGGGCCTGGTGGAGGATCTTCAATCTTACAGCATTACTTCTAACCAGACTGCTTATAGTGCAAGAAGGAGGACTCTTTGCCTGCAAGCTCCAAAACGGGGAGAGTCTAAAGCGTTTAATGTAGAAAACTCGTAACATGGATTACTGTACATAACATGTAACCATTTATATCCAAAATTCAAGCTGCTGGTCTTGTTGATAACAGCCCATGTCTTGTACATCTCCGCTTTATGCCCCTGCCACTGGCTAGGTAGCACTTCTGTTCGGAGTACACACAAATCAACCGGCAGGTCTTGATAGAGAATATCCTGGCCATGTCCACACAGAGCATGATTGTATGCTTTTCGCAACCAGGACACGACTGGGTTTCTGCAACCCAGCTGCACGCGCAGTGGCAATGTTTGTAAACCGTGAAATCGTCTATATatcccaaaaaagaaaaccttcatATTTTACTTGAAAACGGAGTTCTACAATTCTCACAGTgcctgcacttttttttttttttttatcacagtaAGACTTTAAACACCCTGTCTTAAAGGGAAACAGTGCTCCCAGGAATCATCTCTGAAccagcaggaaaacaaaccaataaaggAATAAATGACTTCAATTATTGgcatcaggttttatttattttctgttgtctcTGAACTATTTGCTCTTTTTGCACTTTGAAAAGTGG

Function

GO: NA

KEGG:

id description
K24886 TOGARAM; TOG array regulator of axonemal microtubules protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000398 True 6740 mRNA 0.53 22 13707783 13729942

Neighbor

gene id symbol gene type direction distance location
AMCG00000399 NA coding downstream 6354 13694678 ~ 13701429 (-)
AMCG00000400 NA coding downstream 14257 13691929 ~ 13693526 (-)
AMCG00000391 NA coding downstream 20775 13684027 ~ 13687008 (-)
AMCG00000390 NA coding downstream 55648 13626383 ~ 13652135 (-)
AMCG00000389 NA coding downstream 99786 13604129 ~ 13607997 (-)
AMCG00000397 clg15h14orf28,LOC106581668,LOC106610876 coding upstream 16237 13746179 ~ 13752105 (-)
AMCG00000405 NA coding upstream 60724 13790666 ~ 13792970 (-)
AMCG00000393 otx2,LOC107085600,LOC108232166,LOC100707476,LOC107392362 coding upstream 214917 13944859 ~ 13948608 (-)
AMCG00000408 slc35f4,LOC106593636 coding upstream 324411 14054353 ~ 14061825 (-)
AMCG00000414 NA coding upstream 352559 14082501 ~ 14093284 (-)
G150086 NA non-coding downstream 19606 13687771 ~ 13688177 (-)
G150072 NA non-coding downstream 25652 13599834 ~ 13682131 (-)
G150084 NA non-coding downstream 39644 13667562 ~ 13668139 (-)
G150083 LOC100846954,LOC107575789 non-coding downstream 57778 13649393 ~ 13650005 (-)
G150007 NA non-coding downstream 739068 12966960 ~ 12968715 (-)
G150115 NA non-coding upstream 9854 13739796 ~ 13746130 (-)
G150119 arf6,arf6a,ARF6,arf6.2,LOC106608083,LOC105893149,LOC104956700 non-coding upstream 26574 13756516 ~ 13761597 (-)
G150219 NA non-coding upstream 421646 14151588 ~ 14153846 (-)
G150306 NA non-coding upstream 765517 14495459 ~ 14495660 (-)
G150427 NA non-coding upstream 1160592 14890534 ~ 14891706 (-)
G149847 NA other downstream 1165473 12522520 ~ 12542310 (-)
G149751 NA other downstream 1624569 12081543 ~ 12083214 (-)
AMCG00000336 NA other downstream 1859835 11840480 ~ 11847948 (-)
AMCG00000334 NA other downstream 1898958 11787089 ~ 11808825 (-)
AMCG00000300 NA other downstream 3648783 10029727 ~ 10059000 (-)
G150138 NA other upstream 94012 13823954 ~ 13826709 (-)
AMCG00000409 exoc5 other upstream 273134 14003076 ~ 14028927 (-)
AMCG00000425 entpd5,LOC107586906,LOC105908609,LOC106571572,LOC106608092 other upstream 515875 14245817 ~ 14261332 (-)
AMCG00000436 NA other upstream 840020 14569962 ~ 14572432 (-)
AMCG00000457 NA other upstream 1394083 15124025 ~ 15137923 (-)

Expression


Co-expression Network