AMCG00000399


Basic Information

Item Value
gene id AMCG00000399
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 13694678 ~ 13701429 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000399
CAATCCCTTGTTAACGAAGCAGCTGAGCCAATGACGGGCATCCTCGACTCGGACACTGCCGGTGATTGTGGGTCTCCTGGTGCTGAGGCTGCCGGCGCAGTGGAGACCAGTGAGCCTGACGCACCTGCCGATGCTCTTGTGGTACCTCCTGCGGACACCCCTGCCTTGGCCTCTGCGGTTGCTCCTGCTGACGCTCTCGGTGATGCCCCCGCTGATGCTCTCGGTGATGCCCCCACTGACGCTGCTGTCAATGCTCCTGTTGGCACCCCGTCCCCCGCCCCTGAACCGGTTCCTGAAATGGCAGCTTTGGTAGAAGATGAAGCGGGGCAAGTGCTGGATTCAGAAATAATACCAGACAGTCCTTCCAACATGGAGCTGGAAGACACTTCAAAGGAGGGCCTGGAAGATGGGTTAGATGAGCTTGTTACAGACGAGGTGCCTTTCCCTGCAGAGTATGAGAAGTTCTGGAAAGTAGTGGAGGAGAACCCAGAAGACTTCACTGGATGGACCTACCTGCTACAGCACGTGGAGCAAGAGAATCACCTTGTAGCAGCCCGGAAGGCATTTGACGCCTTTTTTTCGCGGTACCCATACTGCTACGGCTACTGGAAGAAGTACGCTGACATTGAGAGGCGGCAGGGGAACATAAAGCAAGCAGAGGAGGTGTACCGCCGAGGGCTGCAGGCCATTCCCCTCAGTGTGGACCTCTGGCTGCACTACATCAGCTTCCTGAAGGACTGTCTGGACTCCAGTGAGCCTGACACTGAGGCTAGGATACGATCcgTGTATGAAAACGCAGTACTGGCAGCAGGCACAGATTTCCGCTCAGACCGTCTCTGGGAGGCCTACATTAACTGGGAGATGGAGCTGGGGAACCTGGCAAATGTGACTTCTGTCTATGACCGCATTCTGGGAATCCCCACTCAGCTGTACAGCCATCACTTCCAGAGATTCAGAGAACATGTGCAGGGCAATCTGCCAAAGCACTTCCTGTCACTGGATGAGTTCATTCGGCTGCGGCGGGAGCTGGCGGTGGTGAATGGGCACAGTGGGGAGGAGGTGCCTCCTGGCGATGACATCCCCCCCGGCACAGAGGACCTCACTGACCCTGCAAAGCTCGTCACGGAAATCGAAAACATGCGGCACAAAGTCGTGGAATCTCGTCAGGAAGTGTTCAATCACAACGAGCATGAGGTCAGCAAGAGGTGGGCCTTCGAGGAAGCGATTAAGCGTCCGTATTTCCATGTGAAGCCCCTGGAAAAAGCCCAGCTGAATAACTGGAAGGAGTACCTGGACTTTGAGATAGAGAATGGGACCCCAGAACGAGTGGTGGTGCTGTTTGAGAGATGCCTGATAGCCTGTGCCCTGTATGAGGACTTCTGGATCAAGTATGCAAAGTATCTGGAAAACCACAGCATTGAAGGCGTAAGACACATCTACAAGAAGGCCTGCAAGACTCATCTGCCCAAGAAGCCCATGGTTCACTTCCTTTGGGCTGCCTTTGAGGAACAACAGGGGAACATCGAGGAGGCACGGGGGATCCTGCAGGCACTGGAGGAGGCTGTGCCGGGGCTGGCCATGGTACGGCTGCGCAGGGTCAGTCTGGAGCGACGCCACGGCAATCTGGAGGAGGCGGAGAGTCTGCTGCAGGACGCCATGAACAACGGGAAGAACGCCAGCGAGGCGTCCTTCTATGCCATTAAACTGGCCCGGCAGCTCTTCAAGGTGCAGAAGAGCCTACAGAAGGCCAGAAAGGTGCTAGTGGAGGCCATAGAGAGAGACCAgCAGAGTCCCAGGCTGTACCTGAACTTGCTGGAGCTGGAGTACAGCAGTGACGTGAAGCAGAACGAAGAGCAGATCCTGTCGTGCTTCGACAAGGCGCTGAGCAGCCCGCTGCCTATTGAGACCAGAGTCACCTTCTCTCAGCGCAAGGTGGAGTTCCTGGAGGACTTTGGCAGTGATGTCAACAAgcTTATGTCTGCCTATGATGAACATCAAACACTTCTGAAAGAGCAGGAATCAACAAAACGAAAAGCTGAAAATGGGTCTCAGGAACCAGAGCCGAAGAAGCAGCGCACCGACGACACCGCGGCGGTCACTGGGCACATGATGGCAGGTGACATGCAGACCAACCACTCGGCATACAACTACAACTGGTACCAGTACAACTACCAGAATCCATGGAACTATGGGCAGTACTATCCACCTCCACCGACATGATTGGGCACACAGGAGGACAACAACACATCTTTTTAACAAAGCTTCATACTGTAGTCTGCAGTGAGCACCTTCCTGACCCCCTTTCTAAGGGAATTTACCCCGTCACCATTTGAAATAGTTTCAGGATGTAGTATCTGTTGAAGGGCAGGTGTTTTTGATGATTTCATAACATTAATCGGTTTCTTgtacaaaaatgtgaattaaaaacGGAGGTATAAAGTGTTTAAGTTAAAATGGGGTTATTTAATTAGCTCATTGAGTTTCAGGAGATAAATTGGGTATGTAATATACAGGTCCCAGGGACTTGTaagaatacaatgttttttttgtaaatgcagcttttgtttgttacccacaatattttatttgatgtgagCTTTCTACTAGGTGTATTCCCAGCAAcctgattttgtttcttctccttttctgGGAGGTGTGGGTTTATTTTGTGATCAAATACTGAACTGAACTAAAATGAGGGAATaaagtctttgtttttta

Function

GO: NA

KEGG:

id description
K13217 PRPF39, PRP39; pre-mRNA-processing factor 39

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000399 True 2721 mRNA 0.52 13 13694678 13701429

Neighbor

gene id symbol gene type direction distance location
AMCG00000400 NA coding downstream 1152 13691929 ~ 13693526 (-)
AMCG00000391 NA coding downstream 7670 13684027 ~ 13687008 (-)
AMCG00000390 NA coding downstream 42543 13626383 ~ 13652135 (-)
AMCG00000389 NA coding downstream 86681 13604129 ~ 13607997 (-)
AMCG00000383 NA coding downstream 468243 13146530 ~ 13226435 (-)
AMCG00000398 NA coding upstream 6354 13707783 ~ 13729942 (-)
AMCG00000397 clg15h14orf28,LOC106581668,LOC106610876 coding upstream 44750 13746179 ~ 13752105 (-)
AMCG00000405 NA coding upstream 89237 13790666 ~ 13792970 (-)
AMCG00000393 otx2,LOC107085600,LOC108232166,LOC100707476,LOC107392362 coding upstream 243430 13944859 ~ 13948608 (-)
AMCG00000408 slc35f4,LOC106593636 coding upstream 352924 14054353 ~ 14061825 (-)
G150086 NA non-coding downstream 6501 13687771 ~ 13688177 (-)
G150072 NA non-coding downstream 12547 13599834 ~ 13682131 (-)
G150084 NA non-coding downstream 26539 13667562 ~ 13668139 (-)
G150083 LOC100846954,LOC107575789 non-coding downstream 44673 13649393 ~ 13650005 (-)
G150007 NA non-coding downstream 725963 12966960 ~ 12968715 (-)
G150115 NA non-coding upstream 38367 13739796 ~ 13746130 (-)
G150119 arf6,arf6a,ARF6,arf6.2,LOC106608083,LOC105893149,LOC104956700 non-coding upstream 55087 13756516 ~ 13761597 (-)
G150219 NA non-coding upstream 450159 14151588 ~ 14153846 (-)
G150306 NA non-coding upstream 794030 14495459 ~ 14495660 (-)
G150427 NA non-coding upstream 1189105 14890534 ~ 14891706 (-)
G149847 NA other downstream 1152368 12522520 ~ 12542310 (-)
G149751 NA other downstream 1611464 12081543 ~ 12083214 (-)
AMCG00000336 NA other downstream 1846730 11840480 ~ 11847948 (-)
AMCG00000334 NA other downstream 1885853 11787089 ~ 11808825 (-)
AMCG00000300 NA other downstream 3635678 10029727 ~ 10059000 (-)
G150138 NA other upstream 122525 13823954 ~ 13826709 (-)
AMCG00000409 exoc5 other upstream 301647 14003076 ~ 14028927 (-)
AMCG00000425 entpd5,LOC107586906,LOC105908609,LOC106571572,LOC106608092 other upstream 544388 14245817 ~ 14261332 (-)
AMCG00000436 NA other upstream 868533 14569962 ~ 14572432 (-)
AMCG00000457 NA other upstream 1422596 15124025 ~ 15137923 (-)

Expression


Co-expression Network