AMCG00000400


Basic Information

Item Value
gene id AMCG00000400
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 13691929 ~ 13693526 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000400
TGCGCACATAAACAAGCCCTTTTCCTCCGCGCTGCGAGAGAGACACATTGCCGAATAAACTTCGGGGTTTAAATCGCACTACACTTTATATTCTGCCATCTTTCAGCTTTTGTTATTTAGCCGGATCAAGATGCAGCTGTTTGTGCGCACTCAGACCACCCACACCCTGGAGGTGACAGGGCAGGAGACCATCAGAGACATCAAGGCAAGGTCCACGGCTCTCTCGCTCGAGCTGGCAAGGTGCGCGGACAGACGCCAAAGGTCAGTACAGGTCTAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0009987 cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000400 True 277 mRNA 0.52 3 13691929 13693526

Neighbor

gene id symbol gene type direction distance location
AMCG00000391 NA coding downstream 4921 13684027 ~ 13687008 (-)
AMCG00000390 NA coding downstream 39794 13626383 ~ 13652135 (-)
AMCG00000389 NA coding downstream 83932 13604129 ~ 13607997 (-)
AMCG00000383 NA coding downstream 465494 13146530 ~ 13226435 (-)
AMCG00000382 NA coding downstream 545406 13137786 ~ 13146523 (-)
AMCG00000399 NA coding upstream 1152 13694678 ~ 13701429 (-)
AMCG00000398 NA coding upstream 14257 13707783 ~ 13729942 (-)
AMCG00000397 clg15h14orf28,LOC106581668,LOC106610876 coding upstream 52653 13746179 ~ 13752105 (-)
AMCG00000405 NA coding upstream 97140 13790666 ~ 13792970 (-)
AMCG00000393 otx2,LOC107085600,LOC108232166,LOC100707476,LOC107392362 coding upstream 251333 13944859 ~ 13948608 (-)
G150086 NA non-coding downstream 3752 13687771 ~ 13688177 (-)
G150072 NA non-coding downstream 9798 13599834 ~ 13682131 (-)
G150084 NA non-coding downstream 23790 13667562 ~ 13668139 (-)
G150083 LOC100846954,LOC107575789 non-coding downstream 41924 13649393 ~ 13650005 (-)
G150007 NA non-coding downstream 723214 12966960 ~ 12968715 (-)
G150115 NA non-coding upstream 46270 13739796 ~ 13746130 (-)
G150119 arf6,arf6a,ARF6,arf6.2,LOC106608083,LOC105893149,LOC104956700 non-coding upstream 62990 13756516 ~ 13761597 (-)
G150219 NA non-coding upstream 458062 14151588 ~ 14153846 (-)
G150306 NA non-coding upstream 801933 14495459 ~ 14495660 (-)
G150427 NA non-coding upstream 1197008 14890534 ~ 14891706 (-)
G149847 NA other downstream 1149619 12522520 ~ 12542310 (-)
G149751 NA other downstream 1608715 12081543 ~ 12083214 (-)
AMCG00000336 NA other downstream 1843981 11840480 ~ 11847948 (-)
AMCG00000334 NA other downstream 1883104 11787089 ~ 11808825 (-)
AMCG00000300 NA other downstream 3632929 10029727 ~ 10059000 (-)
G150138 NA other upstream 130428 13823954 ~ 13826709 (-)
AMCG00000409 exoc5 other upstream 309550 14003076 ~ 14028927 (-)
AMCG00000425 entpd5,LOC107586906,LOC105908609,LOC106571572,LOC106608092 other upstream 552291 14245817 ~ 14261332 (-)
AMCG00000436 NA other upstream 876436 14569962 ~ 14572432 (-)
AMCG00000457 NA other upstream 1430499 15124025 ~ 15137923 (-)

Expression


Co-expression Network