AMCG00000405


Basic Information

Item Value
gene id AMCG00000405
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 13790666 ~ 13792970 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000405
ATGGCGGCGCTCCCGACTGAGCCCGGAGACGAGGGCTATTTCGTCCGAGAGGTGGAGAAGAGAGACGGCGGCTGCCTGCGGGTGAAGCAGTGCAGCCGGGGCGACGTGGGCTGCGTGGTGTGGGACGCGGCCATCGTGCTCTCCAAGTACCTGGAGACGGAGCAGTTCTGCGACCCCGCCGCCGGGATCAACACCTGGGCGGACAAAACCGTGGTGGAGTTGGGCGCCGGGACCGGAGTCGTGGGTCTTATGGCGGCCACTCTGGGAGCCCATGTGATTGTGACAGACCTGGAGGATTTACAGCCCCTGCTGGAGACGAACATCCAGGACAATGCGGCCCTGGTCAGCTCTGGGTCTGTCAAAGCCAAGGTACTGAAATGGTTTTGTGCGTCTCTCTGCCCCCAGTCTCTGGAGCCGCTGGTGATGACTCTGCGAAGCCTGGCTGGACCGCAGACCTGCATCATCTGCTGCTATGAACAACGCACCATGGGCCACAATCCTGAGGTGGAGAAGCGCTTCTTTGAGCTGCTGCTGCGGCACTTCGAGTCTGAGGCGATCCCCCTGGAGAAACAGGACCCCGAGTACAGCAGCCCGGACATCCACGTCCTGCACCTCCACCTGCGGCCCTGACTGCACCGGCACTGCGGACCGGCAGGAGGTTGGTTGCGTTCGGACGATGCGGGGTGGAAGGCCAGCACAATGAACCTGTCCACAGACAATGATTGTAAGCTGGAGCTGTAAGCTGTGGAGAGGGACACATTGTTGTAGGTCTGGTGTGTAAACCTGGGGATTTTCTATAGAGCGCTGTCTGTATAAAATGTTTGagattaaatgtttcatttcaaaatgcgAGGaacttttttaaacaataaatatttgag

Function

GO: NA

KEGG:

id description
K21806 VCPKMT, METTL21D; protein N-lysine methyltransferase METTL21D

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000405 True 881 mRNA 0.58 4 13790666 13792970

Neighbor

gene id symbol gene type direction distance location
AMCG00000397 clg15h14orf28,LOC106581668,LOC106610876 coding downstream 38561 13746179 ~ 13752105 (-)
AMCG00000398 NA coding downstream 60724 13707783 ~ 13729942 (-)
AMCG00000399 NA coding downstream 89237 13694678 ~ 13701429 (-)
AMCG00000400 NA coding downstream 97140 13691929 ~ 13693526 (-)
AMCG00000391 NA coding downstream 103658 13684027 ~ 13687008 (-)
AMCG00000393 otx2,LOC107085600,LOC108232166,LOC100707476,LOC107392362 coding upstream 151889 13944859 ~ 13948608 (-)
AMCG00000408 slc35f4,LOC106593636 coding upstream 261383 14054353 ~ 14061825 (-)
AMCG00000414 NA coding upstream 289531 14082501 ~ 14093284 (-)
AMCG00000413 NA coding upstream 372911 14165881 ~ 14167002 (-)
AMCG00000428 NA coding upstream 419699 14212669 ~ 14214918 (-)
G150119 arf6,arf6a,ARF6,arf6.2,LOC106608083,LOC105893149,LOC104956700 non-coding downstream 29069 13756516 ~ 13761597 (-)
G150115 NA non-coding downstream 44536 13739796 ~ 13746130 (-)
G150086 NA non-coding downstream 102489 13687771 ~ 13688177 (-)
G150072 NA non-coding downstream 108535 13599834 ~ 13682131 (-)
G150219 NA non-coding upstream 358618 14151588 ~ 14153846 (-)
G150306 NA non-coding upstream 702489 14495459 ~ 14495660 (-)
G150427 NA non-coding upstream 1097564 14890534 ~ 14891706 (-)
G150476 NA non-coding upstream 1435927 15228897 ~ 15229292 (-)
G150485 NA non-coding upstream 1457655 15250625 ~ 15250829 (-)
G149847 NA other downstream 1248356 12522520 ~ 12542310 (-)
G149751 NA other downstream 1707452 12081543 ~ 12083214 (-)
AMCG00000336 NA other downstream 1942718 11840480 ~ 11847948 (-)
AMCG00000334 NA other downstream 1981841 11787089 ~ 11808825 (-)
AMCG00000300 NA other downstream 3731666 10029727 ~ 10059000 (-)
G150138 NA other upstream 30984 13823954 ~ 13826709 (-)
AMCG00000409 exoc5 other upstream 210106 14003076 ~ 14028927 (-)
AMCG00000425 entpd5,LOC107586906,LOC105908609,LOC106571572,LOC106608092 other upstream 452847 14245817 ~ 14261332 (-)
AMCG00000436 NA other upstream 776992 14569962 ~ 14572432 (-)
AMCG00000457 NA other upstream 1331055 15124025 ~ 15137923 (-)

Expression


Co-expression Network