AMCG00000408 (slc35f4,LOC106593636)


Basic Information

Item Value
gene id AMCG00000408
gene name slc35f4,LOC106593636
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 14054353 ~ 14061825 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000408
ATGAAGAAACACTCAGCCAGAGTGGCTCCTCTCAGCTCCTACAGCGCCTCTGTCCTGACCTGCCCTGTCTCCGAAGGAGAGGAAGGCTCCGAGTCCCATGCAGAGACGCCGGGCAGCGAGGGCAGCGGGGCGCGCTCCCAGTGCCAGTCCTGCGCCAGCACAGCCCTCAAGGTTCTGGGTGGTCTGCTGGTGGTGCTCTCTGTGTCCTCCTCCTGGGTGGGAACCACACAGATAGTCAAACTCACCTTCCAGTCCTTCTCCTGCCCCTTCTTCATGACCTGGTTCAGCACCAACTGGAACATCCTCTTCTTCCCCCTCTACTACTCCGGACACCTGGTCACTGCGCGCCAGAAACAGACCCCCATTCAGAAATTCAGGGAGTGCAGTCGGATTTTCGGGGAGGACGGGTTGACCCTGAAGCTGTTCCTCAAACGCACGGCTCCGTTCTCCATCCTGTGGACCCTCACCAACTACCTGTACCTGCTGGCCCTGCGCAAGCTCACCGCAACCGACGTCTCGGCGCTCTACTGCTGCCACAAGGCCTTTGTCTTCCTGCTGTCCTGGATCGTGCTCAAGGACCGCTTCATGGGCGTGCGGATAGTGGCCGCAATCATGGCCATCACAGGCATTGTAATGATGGCGTACGCAGATGGCTTCCATGGGGACTCCATCATAGGTGTGGCCTTGGCAGTAGGCTCTGCCTCCACATCAGCTCTCTATAAGGTGCTGTTTAAGATGTGCCTGGGCAGTGCCAACCTGGGCGAGGCGGCACACTTCTTCTCCACGCTGGGCTTCTTCAACCTTATCTTCATCTCCTGCACACCGGTCATCCTGTTCTTCACCAAGGTGGAGCACTGGGGCTCCCTGTCCGCCCTGCCCTGGGGGTACCTGTGTGGAGTGGCGGGGCTGTGGCTGGCAGTGGACGTGCTGAAACACGAGGTGATCTTCAGCGTGGTGCGCCTGGCCGCCACCGCCATCATCTGCCTGGGcttcttgctgctgctgctgcccgaGGAGTGGGACACCATCACGCTGCGCTTCTTCGCCACCTTCGCCGAGAAGAAGGCCGAGGAGCACGGCGAGGAGCTGACCGAGTCCAGTGTCCACACCCGGAGCCGCAGCCGGGCCAACGGCACCGTCTCCATCCCGCTGGCATGA

Function

symbol description
slc35f4 Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC35F4 (solute carrier family 35 member F4).

NR:

description
solute carrier family 35 member F4 isoform X2

GO: NA

KEGG:

id description
K15288 SLC35F3_4; solute carrier family 35, member F3/4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000408 True 1158 mRNA 0.61 6 14054353 14061825

Neighbor

gene id symbol gene type direction distance location
AMCG00000393 otx2,LOC107085600,LOC108232166,LOC100707476,LOC107392362 coding downstream 105745 13944859 ~ 13948608 (-)
AMCG00000405 NA coding downstream 261383 13790666 ~ 13792970 (-)
AMCG00000397 clg15h14orf28,LOC106581668,LOC106610876 coding downstream 302248 13746179 ~ 13752105 (-)
AMCG00000398 NA coding downstream 324411 13707783 ~ 13729942 (-)
AMCG00000399 NA coding downstream 352924 13694678 ~ 13701429 (-)
AMCG00000414 NA coding upstream 20676 14082501 ~ 14093284 (-)
AMCG00000413 NA coding upstream 104056 14165881 ~ 14167002 (-)
AMCG00000428 NA coding upstream 150844 14212669 ~ 14214918 (-)
AMCG00000427 NA coding upstream 168894 14230719 ~ 14235167 (-)
AMCG00000426 aldh6a1,LOC107664467 coding upstream 214147 14275972 ~ 14285610 (-)
G150119 arf6,arf6a,ARF6,arf6.2,LOC106608083,LOC105893149,LOC104956700 non-coding downstream 292756 13756516 ~ 13761597 (-)
G150115 NA non-coding downstream 308223 13739796 ~ 13746130 (-)
G150086 NA non-coding downstream 366176 13687771 ~ 13688177 (-)
G150084 NA non-coding downstream 386214 13667562 ~ 13668139 (-)
G150083 LOC100846954,LOC107575789 non-coding downstream 404348 13649393 ~ 13650005 (-)
G150219 NA non-coding upstream 89763 14151588 ~ 14153846 (-)
G150306 NA non-coding upstream 433634 14495459 ~ 14495660 (-)
G150427 NA non-coding upstream 828709 14890534 ~ 14891706 (-)
G150476 NA non-coding upstream 1167072 15228897 ~ 15229292 (-)
G150485 NA non-coding upstream 1188800 15250625 ~ 15250829 (-)
AMCG00000409 exoc5 other downstream 25426 14003076 ~ 14028927 (-)
G150138 NA other downstream 227644 13823954 ~ 13826709 (-)
G149847 NA other downstream 1512043 12522520 ~ 12542310 (-)
G149751 NA other downstream 1971139 12081543 ~ 12083214 (-)
AMCG00000336 NA other downstream 2206405 11840480 ~ 11847948 (-)
AMCG00000425 entpd5,LOC107586906,LOC105908609,LOC106571572,LOC106608092 other upstream 183992 14245817 ~ 14261332 (-)
AMCG00000436 NA other upstream 508137 14569962 ~ 14572432 (-)
AMCG00000457 NA other upstream 1062200 15124025 ~ 15137923 (-)
AMCG00000464 batf other upstream 1151577 15213402 ~ 15222743 (-)
AMCG00000475 NA other upstream 1227478 15289303 ~ 15291255 (-)

Expression


Co-expression Network