AMCG00000413


Basic Information

Item Value
gene id AMCG00000413
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 14165881 ~ 14167002 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000413
atgtatttcaaaatgttgaagCTGAGACTCCTCAATGCCATTGCCCCCACCTACTTCTTCACAGCCACGGTGGTCACGTTCGCCCTGcacttttatttcttcttaCCGACCATCTTCGCCAGACCGGACGCGGGTTTCGGCACGGCCACCCTGCTCCACACCGTCGTCTTCCTCTACCTGATGCTGAACGCGTTGGGCAACTATGTGATGACCATTCGCTACCCAGCGGAGAGCGCCACCGACCACATCGTGCCTGTGTGCTCGCCCGACTGCCCCGACAGAGTGGACGCCCATTACCTCTTCAATGGCCGGCACTTCTGTAAACTGTGCAAGAAGGTGATCTTGAAGAGGGACCACCACTGCTTTTTCACCGGCAACTGTATCGGGAACAAGAACATGCGTTACTTCATTATGTTTTGCATCTACACCTCGTGCACCTGTCTGTACTCCTTGGTTTTAGGAGTGGCATATCTGACGGTGGAATACTCCATTTCCTTCGAGAATCCCCTGACCTTCCTCACCCTCCTGCCTCTGTCGACTGGTTACTTCTTTTTAGGTGCCATCCCGGGGCAGCAGTTCTTCCTGGTCCTCATGCTGTACGTGTGGCTGGGAATCGGGCTGACCTGCGCGGGATTCTGCTGCCAACAGGTGCTGTTGGTGGCGCGGGGGCAGACCTGGTGCCAGGTGTGGAAGGGCCAGCTGGTGGAGGCGCACAGCTCCTGGAGGGCCAACCTGAGTGACGTGTTCGGCAGGCGCTGGCTGCTGGGGTTCTTCCTGCCGGTGCAGACGGTGGAGACGCCGCAAGATGACAACAAGAAAGGCAGCTGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K18932 ZDHHC; palmitoyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000413 True 828 mRNA 0.57 2 14165881 14167002

Neighbor

gene id symbol gene type direction distance location
AMCG00000414 NA coding downstream 72597 14082501 ~ 14093284 (-)
AMCG00000408 slc35f4,LOC106593636 coding downstream 104056 14054353 ~ 14061825 (-)
AMCG00000393 otx2,LOC107085600,LOC108232166,LOC100707476,LOC107392362 coding downstream 217273 13944859 ~ 13948608 (-)
AMCG00000405 NA coding downstream 372911 13790666 ~ 13792970 (-)
AMCG00000397 clg15h14orf28,LOC106581668,LOC106610876 coding downstream 413776 13746179 ~ 13752105 (-)
AMCG00000428 NA coding upstream 45667 14212669 ~ 14214918 (-)
AMCG00000427 NA coding upstream 63717 14230719 ~ 14235167 (-)
AMCG00000426 aldh6a1,LOC107664467 coding upstream 108970 14275972 ~ 14285610 (-)
AMCG00000418 NA coding upstream 176535 14343537 ~ 14350726 (-)
AMCG00000415 NA coding upstream 235074 14402076 ~ 14418666 (-)
G150219 NA non-coding downstream 12035 14151588 ~ 14153846 (-)
G150119 arf6,arf6a,ARF6,arf6.2,LOC106608083,LOC105893149,LOC104956700 non-coding downstream 404284 13756516 ~ 13761597 (-)
G150115 NA non-coding downstream 419751 13739796 ~ 13746130 (-)
G150086 NA non-coding downstream 477704 13687771 ~ 13688177 (-)
G150084 NA non-coding downstream 497742 13667562 ~ 13668139 (-)
G150306 NA non-coding upstream 328457 14495459 ~ 14495660 (-)
G150427 NA non-coding upstream 723532 14890534 ~ 14891706 (-)
G150476 NA non-coding upstream 1061895 15228897 ~ 15229292 (-)
G150485 NA non-coding upstream 1083623 15250625 ~ 15250829 (-)
G150502 NA non-coding upstream 1094385 15261387 ~ 15263576 (-)
AMCG00000409 exoc5 other downstream 136954 14003076 ~ 14028927 (-)
G150138 NA other downstream 339172 13823954 ~ 13826709 (-)
G149847 NA other downstream 1623571 12522520 ~ 12542310 (-)
G149751 NA other downstream 2082667 12081543 ~ 12083214 (-)
AMCG00000336 NA other downstream 2317933 11840480 ~ 11847948 (-)
AMCG00000425 entpd5,LOC107586906,LOC105908609,LOC106571572,LOC106608092 other upstream 78815 14245817 ~ 14261332 (-)
AMCG00000436 NA other upstream 402960 14569962 ~ 14572432 (-)
AMCG00000457 NA other upstream 957023 15124025 ~ 15137923 (-)
AMCG00000464 batf other upstream 1046400 15213402 ~ 15222743 (-)
AMCG00000475 NA other upstream 1122301 15289303 ~ 15291255 (-)

Expression


Co-expression Network