AMCG00000414


Basic Information

Item Value
gene id AMCG00000414
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 14082501 ~ 14093284 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000414
ATGGTTTGTTCCGGGACGCTGCGACTCTGCCTGCTTGTCTGGGGGTGCGCTCTCGGCTCTGCCACCCCGGTGCCAAGTAGGGTGTCAGTTTTGGCCACTCACAGGGATGGCAATAGGCATAATAAGGGTGGAGAGCCCACAGTAGCACAGGAGCTGGGCATTGTGACCGAAAGAGAGACTGAGCATGGTCCCGTACCCACCACACCCACAACTCCACCAGATGCCCCGAGCTCAGAGCAGATGGGAACAGTAAAGAAAGCATTAAATGAACTGGCACCAAGCAGCGAGCCTCCCACTATCCCAGTTCAGCTTGGCAATGGCAAAGCTTCACAGCAGTCCCAAAGGGCAAAGATGGCCTCTCAGAGTTCAAGTGTGGAGAGCCCTGCTGTCAGCCCCACTCTGCTGTCTGCGGGCACCACTGGGATGCCTGCCCCTTCTGACACGAGCGAGAGGGCAGCTCTAAAGAGCGGGACGGCCTCGCCAGTCAAAAAACGGCTGCTGAGTCATGGCATGACCCCTCCTATACAGACAGACAACGCTCCAGTGCTGAGAGAAGAAGCTGGAGGAGAGGGAGCTACAGAAGAGTCTCCCACTCCAGAAGGGGGCCTACAAGAGCTTGAGGATGGGCTGGAGGTGGGGAGCTTATCCCTGGAACAGAAAGTGTTCAGTGGGCCTCTCTGGGCGCCGACTGACAAGACGACAATGCCAGTTCCTGTGAGATCCAGTGCCACAGAGCTCAGTGACAAGTCAGGTAAGAAACAGGCTGGTGTTGTTAGAACTGCAGGGACTAAGAATTTGACCACCGTCTCACCAGCTCAAAATTCCTCAGCACTGGTGAAGGCGGAGGAGGAAACAGACGACACAACAAAGCAGGGCTCTCCTGCTCCCACCAAGATAGACTCACACAAGACTGGACAGCAGAAGACTGAAGAGGGAGGAGCAATGGAGGGACCAAAAGGAAGAGAGATGGGGGCCCTGGATGTCTCAGCAATTCAGAGTCCAACAGTGCAAGAGTCCAACGTGGCCACTGGGAATGTGCAGGACCTGGGAGTTCAGGGCGGCGAAGAAGGAGAACTAGACGTACAGCCAAGTGAGGAGGAGGGAGCAGTAGAACAAGCATCACTCATCAGGCAATCCTTTCCCACCAACATCCCTGACAGCACCAAAACAGCGGCCATATCTGACGGCAGATCTTCCATAAATGATTCATCCTCCCCCCTGGACCCAGAAGCAGAGGAGAGACAGACTGCAGTATTGGACGGCTCCCAGCGCTCCAGCTCTCCTGTGCCAGAACCGACAGAAGGCAGAGCCAACGATGCTCCGTCCAATCCTGGCCCAGACCTCTCGCCCAGCGCCCCCCCAGGGCTGATGACTGGGGAAGGAGAGAGCTCTTTGAAGCCCAGCACCTCTAATGAGCTGCGGCTGGCCTCCCCAACCCCCACAGTACCCCCCGCAGGAAGACTGGAACCCAGTGCTGGTCCAGTAGAGGAGAAACTGCTGTTGAACTCGGTCAGCCCGTGGATTGAGGATGAAGATGAAAATCCCTCCGTGTCCTCAGCTGTGACTGCAAAGGACaacacccccccatccccagtGTCAGCTGTAAACCCCTCCCAGCACTTCCATGTCACTGCAGAGACGGTGGCCAAGGCCTGGAGTCAGTCTGCGATAGGGGGCCCAACTGCAGGCCAGGAGGGGGATGGGATGCAGCTCTCTGAGGGGTTGCCTCTGCTGTTCGAACCTGCAGTCACTACCCTCCCGGACAGCACCCCACTGCAACCAGAGGCCTTCATAACGATGCTCCCCGACGGAGATCCCCTCGACCCGCAGTCATTGGTCACGGCGGCCTCCAGCGGGATCCCGCTGGCGTCGGATCTCACCGGCACTGCAATCTTTAATGAAGACCTGTCCCTGGCAGAGTCGTCTGTCACCGAGCTGCCCGAAGAAGTGCCCCAGGCCTGGCAGACGGCCGGAGTCGACCTCTTCGAGGGAGTGACCCCTCCAGAAATGGTGTCCCTCACGGCCCCGACAGGCCCCCCAACTGGCTCAGGAGCCCCCGACTCTGAAGAGCTGGACATGATCGGTGATCCTGGAGAAGTCCTTCCCATGACGACCGAATCCCCTCTTCCTGGGACGTCTCCCGGGAAACTGTTCCTGACCACAGTAGCCAGGGCCACCAGCCTGTCCACCCCCAAGCCTGAGTCTGGGCTGGAGGACCTCGAGAAACTGGAGTCTGAAGAGGAACACGACGAGGAGGACGAGGAAGACGAGGACGCGGAGGAGtccgaggaggaggagagtcGAGAGGACGAGCCCGAGACAGAGGGTCCTGGGGTCACCGCCGTGCCGCCCACCTTCAGCCACACGCCGTACCGCCTGCCCACGGGCTCCGAGTGGGTCCAGCGCAACCAGGGCCTAGTTCGCAGCTGGGTCGAGAAGATTCGAGACAAGCACAGAGAAATGAGCAGCAGGCAGGACAGAGTGATGCTATTGGCTGACAGCTCAGAGGATGAATTTTAACCCCTCACACAGCCCATACCACCCTTCAGCAATAATCTTCGCCCATAACCTCGCCAGCTCCCGGCCCCAGTGCCTCCTGGGAGAGTCCTGGGAGGTGCCTCCATTACTCTCTACCGGGACCCTTTAACCTCCTCTCACCCACCAAGGGTTCCAAGAGCGACATGCGACTGCAGAGCAACTTGCATCTAATCCAGGTTTCCCCATCGACCTGCTCATACCTCTGTAGAAGCAACAACTGGGATTCCACGTGACATCATCAAGGGAGCAGGGGGAATAGGACAGCTTCATTCCTACAGCACACAAGTAAGGACCCCTCAGTACCTCATCATATTGCTCCCACTGAACCTACGATTACACTCAGAAATCCACCAACTGGCTGTGTGGGTGACTGGCAGCGTCCAGTGGAGCCAAAACCAAACGCTTGAATATTATTGCCAACAACAAAATGTCcgacagtaaaataaattacatttaaaactcacTTGAATGAAGTGAGCTTGTACAGAGCCCCGGGCACCAGTGCCCTCATTGGGATTGGTATCATCTGTAGGACTGCACATAGGTACTTTAGCAAATCACCGTGTTAGATAGTGGAGTCAGGCATCATGTACATTAGATCAGCCAATCACCAACATGTTGTACAATTATGCCAAATCGCAGTCAAATAGAGTTGCAAGGTTCATTGTGACATCACTGTTTACAGTCTGTCAGCATCTCATTTTGGAGTGTTATAAATATTGACTGTAATACAATGTCTGCCTTTGATGTTATTCTAACTGTACAGCAAGAACAGAAAGAGGGAAAAgcactttatattattattattattattatttattattattattactaagtTACCAGGGATAATTAATgagccactgaacacacagcagTGCATTAAGCGTGTTGCAGTCATTTATAAATTGAACCGATCTAGTAAAATGAATTGGCTTCTTTTACTTGTATGGgatcagaaaaggaaaatggcaaTGGTGTATTTGGATTCCAACAAGCCATGTTTAATTGTAGTCCAAACAGCATGGCGGCAGTCTTGCCTGTGATCGAGCTGCAGAAATCCTTTAGCGCGAGGCTCTGCGAGACGCCACACTGCAGTGCATCGCTTTGTGTTCGAAGGCTCACCGTTCTGTGAATTGGTCTGCCATTTTTATAAACCTGCTGTATAATACTGTTTTCCTGCTGACGCTTCTCGTATTAATAACGGCACCTTTCTGTTCAGACCCTCTCCCCTCTCGGCTCCTGTTCAAATGATGCAGCTTTCCCGTCCCCACGCAGAGTGATTGTCCGCCTGCAGCGCCCTTTCTATTTGCTTGCGATTATGACTAGAGGCTGTGCGTTCACAGTTCTTCTTTCTGCTTAATCTACCTGCCTCTCTTTCGTTTTGTCtctttgtaatataatttgcaaTGAATCAACTAGGAGATGTGCTCCTCTGTTCTCCTCCTCTGTAGTAACCTCACTGGGGAGGGCGACACTCACAAACAAGATCTGTATTCTGACCAGCTCCCTGTTATGCAAAACCTAATTAAACCTCctgattattttcttacatttctggggcattttcttttacataagCTCAGTGAGGAGTTTCTCCAGATTTGCTTTCCAGAAACAGACATCGTAGGTTGCTCCATATTGAGTAAACTGGGAAATTATGTAACACACATACTGCTTCCATTTAGCAAACGTCATGAAGACATAAATATGgtttaattatatgaattacaGCTCTAAAGGTGGGCAGGTTGGTTAGAATTTAAAACTCTGACATGAAAAGCCCTATTAATAATATCTAATCCCGTATCCAATTAACATCCTTAAATTTGCCCTGTGCTCCCAGTTTCTGTACTGAAGCACAACCACCgctctttatttcagtttcccGTCATTTGTAGCTTCCTTACAGTTGACATTTTCACCTCAACACCTTTCTCAAGGTTTGGATTATGAGGACagggggacagacagacagacagacagacaggaggggcctgaggggagagagaaacactTTGTTCTTGCAGTGTTTATTGTAGCAAATGCAGCCAAGTCTTGTGCCCAAAAAAGCAACTATTTTGTGAAttgaagaaatgtttttttattttattttgttagttattGCACTGTTCCTTCTctgttgaaaacaaataaatatgatgaATATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000414 True 4707 mRNA 0.51 6 14082501 14093284

Neighbor

gene id symbol gene type direction distance location
AMCG00000408 slc35f4,LOC106593636 coding downstream 20676 14054353 ~ 14061825 (-)
AMCG00000393 otx2,LOC107085600,LOC108232166,LOC100707476,LOC107392362 coding downstream 133893 13944859 ~ 13948608 (-)
AMCG00000405 NA coding downstream 289531 13790666 ~ 13792970 (-)
AMCG00000397 clg15h14orf28,LOC106581668,LOC106610876 coding downstream 330396 13746179 ~ 13752105 (-)
AMCG00000398 NA coding downstream 352559 13707783 ~ 13729942 (-)
AMCG00000413 NA coding upstream 72597 14165881 ~ 14167002 (-)
AMCG00000428 NA coding upstream 119385 14212669 ~ 14214918 (-)
AMCG00000427 NA coding upstream 137435 14230719 ~ 14235167 (-)
AMCG00000426 aldh6a1,LOC107664467 coding upstream 182688 14275972 ~ 14285610 (-)
AMCG00000418 NA coding upstream 250253 14343537 ~ 14350726 (-)
G150119 arf6,arf6a,ARF6,arf6.2,LOC106608083,LOC105893149,LOC104956700 non-coding downstream 320904 13756516 ~ 13761597 (-)
G150115 NA non-coding downstream 336371 13739796 ~ 13746130 (-)
G150086 NA non-coding downstream 394324 13687771 ~ 13688177 (-)
G150084 NA non-coding downstream 414362 13667562 ~ 13668139 (-)
G150083 LOC100846954,LOC107575789 non-coding downstream 432496 13649393 ~ 13650005 (-)
G150219 NA non-coding upstream 58304 14151588 ~ 14153846 (-)
G150306 NA non-coding upstream 402175 14495459 ~ 14495660 (-)
G150427 NA non-coding upstream 797250 14890534 ~ 14891706 (-)
G150476 NA non-coding upstream 1135613 15228897 ~ 15229292 (-)
G150485 NA non-coding upstream 1157341 15250625 ~ 15250829 (-)
AMCG00000409 exoc5 other downstream 53574 14003076 ~ 14028927 (-)
G150138 NA other downstream 255792 13823954 ~ 13826709 (-)
G149847 NA other downstream 1540191 12522520 ~ 12542310 (-)
G149751 NA other downstream 1999287 12081543 ~ 12083214 (-)
AMCG00000336 NA other downstream 2234553 11840480 ~ 11847948 (-)
AMCG00000425 entpd5,LOC107586906,LOC105908609,LOC106571572,LOC106608092 other upstream 152533 14245817 ~ 14261332 (-)
AMCG00000436 NA other upstream 476678 14569962 ~ 14572432 (-)
AMCG00000457 NA other upstream 1030741 15124025 ~ 15137923 (-)
AMCG00000464 batf other upstream 1120118 15213402 ~ 15222743 (-)
AMCG00000475 NA other upstream 1196019 15289303 ~ 15291255 (-)

Expression


Co-expression Network