AMCG00000426 (aldh6a1,LOC107664467)


Basic Information

Item Value
gene id AMCG00000426
gene name aldh6a1,LOC107664467
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 14275972 ~ 14285610 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000426
TCGGTCCTTCCCACCACATGTCAAGTTTATGTGAAGGTGTTTAGCGGTCGATTTAGGTTTTGgtctcttttatatttttagcgAAAAAGCTCCAGCCGTTACATTGTAAGTCATGGCAGCTGCAATGTTGAGATCCGTGTGGAAGAACAAGGTGCCTCTTAAGGTGGGGCAGATGTGCTACTCGTCTTCTGTGCCTACCACAAAGCTGTTTATTGACGGGAAGTTTATTGAATCCAAGAGTTCGGAATGGCTTGACATCCATAACCCTGCCACCAATGAGGTGATCGGTCGGGTCCCTAAAGCCACCCAGGAGGAGATGACTGCAGCGGTGAACTCCTGCACTAAGGCCTTCCACTCCTGGTCTGAGACGTCAGTCCTCAGCCGCCAGCAGATCTTTCTGCGCTACCAGCAGCTCATCAAAGACAACCTGAAAGAGATTGCCAAGCTGATCACCCTGGAGCAGGGGAAGACCCTGGCAGATGCGGAGGGAGACGTGTTCAGAGGATTGCaggtgGTGGAGCACACCTGCAGCATCACATCTCTGATGCTGGGGGAGACCCTGCCCTCCATCACCAAGGACATGGACACCTTCACATACCGCCTGCCCCTGGGCGTGTGTGCGGGCATCGCGCCTTTCAACTTCCCCGCCATGATCCCGCTGTGGATGTACCCCATGGGCATGGTCTGCGGGAACACCTACCTGATGAAGCCGTCCGAGAGGGTGCCGGGGGCCACCATGCTGCTGGCCAAGCTCCTGCAGGACGCGGGGGCCCCTGACGGCACGCTCAACATCATACATGGCCAGCACGACGCGGTGAACTTTATCTGTGAACATCCTGCCATTAAGGCAATCAGCTTCGTGGGCTCCAACCAGGCGGGGGAGTACATCTATGAGAGGGGATCCAAACATGGCAAGAGAGTGCAGTCCAACATGGGAGCAAAGAACCATGGCGTGGTGATGCCCGACGCCAACAAAGAGAACACCCTGAACCAGCTGGTGGGGGCTGCGTTTGGGGCGGCGGGGCAGCGCTGCATGGCCCTGTCCACTGCCATCCTGGTGGGCGAGGCCAGGTCCTGGCTGCCAGAGCTGGTGGAGAGGGCGAAGAAACTCCAGGTCAACTCAGGTGACCAACCTGGGGCTGATGTGGGGCCCCTCATCTCCCCTGAGGCCAGGAAGCGAGTGAACGCTCTGATCCAGAGTGGCGTGGATGAGGGCGCCTCTCTGCTGCTGGACGGGAGGGATGTCCAGTCCAGTATGAAATGCTACACAGAGGAGATCTTTGGCCCGGTCTTGGTGGTTCTGGAGGCCAGCAATCTAGATGAAGCCATTCATATTGTGAACCGCAACCCCTACGGCAATGGCACTGCCATCTTCACCACGAATGGAGCTACTGCGCGCAAATACACACACGAGGTGGACGTGGGACAGGTTGGCGTTAATGTACCCATCCCTGTCCCACTGCCCATGTTCTCCTTCACTGGGTCTCGGGCCTCCTTCAGAGGAGACACCAACTTCTATGGGAAACAAGGAATTCAGTTTTACACCCATATCAAGACCGTCACATCTCAGTGGAAAGAGGAGGATGCCACTCTGACAAGCCCGGCCGTTGTAATGCCAACCATGGGACGTTAGGAGAGCCTGCAGTGAACCTGTTCCCATTGGATGCAAAAACCCACAATTCCGCCATTGTTCTGGAAAAGAAGTTAACTCAAAACCTGACGGACAGGCCTCAGTGTTCAGATGGGTAATATCAAAGGGGTGATGTCTTCTTTCGTAGTGATTTAGATTTGCATTATCATAGATCCTTGGTAAGTATTGTGAAAATGAGTCTCATCCTGGGTTATCCACAAGGTAGAATAGGCAGAGAGTGCCTTACTAGATTACTTTCTGAAGAAAGGTGCTTTAGAATTGAAAGGATGCATTAAAATACCACAAGAATGGTTTAAGGTTATACTACACAATGTTCTACTCCATGATATGATGGCTATTTGCCATGTTCCAATACCGTACCTCAAGTGACTTATGTGAAAATGACTGAAATTATACCCGTCCTCTATTAGTAGTGTACAGTGCTTCACAAAGTCACTGAATATCACATCGATGATATTGGGATGACTGTACTCCTTGCTGATGGAATGTATCTTGTTTTAGAGTGTTCTCTTGAatactgacaaaaaaataatgtgtcttCTGTATGATTGTTGATTACTAATGCATTTTCACTAAATGCAGTGGCTGTCCTGTCATCAAATAAAGATTCAGGTTCAATAAAAATGTCTCCTATCAGATTTTCTTTGGGACTGTGagtatattgttttaatcttaACCTTCACACGTGCTATGGTGGgccattttacatttcacacaaaTGTAGCGGTCACAAGTCTACAGTCATCAAACTGCGTTTTTGTGATGATGCAAAGTAGAGCAGAACTACCTACTA

Function

symbol description
aldh6a1 Predicted to enable malonate-semialdehyde dehydrogenase (acetylating) activity and methylmalonate-semialdehyde dehydrogenase (acylating) activity. Predicted to be involved in thymine catabolic process and valine catabolic process. Predicted to be active in mitochondrion. Is expressed in several structures, including alar plate midbrain region; digestive system; midbrain; musculature system; and ventricular zone. Orthologous to human ALDH6A1 (aldehyde dehydrogenase 6 family member A1).

NR:

description
PREDICTED: methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0004491 methylmalonate-semialdehyde dehydrogenase (acylating) activity molecular_function

KEGG:

id description
K00140 mmsA, iolA, ALDH6A1; malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000426 True 2444 mRNA 0.50 12 14275972 14285610

Neighbor

gene id symbol gene type direction distance location
AMCG00000427 NA coding downstream 40805 14230719 ~ 14235167 (-)
AMCG00000428 NA coding downstream 61054 14212669 ~ 14214918 (-)
AMCG00000413 NA coding downstream 108970 14165881 ~ 14167002 (-)
AMCG00000414 NA coding downstream 182688 14082501 ~ 14093284 (-)
AMCG00000408 slc35f4,LOC106593636 coding downstream 214147 14054353 ~ 14061825 (-)
AMCG00000418 NA coding upstream 57927 14343537 ~ 14350726 (-)
AMCG00000415 NA coding upstream 116466 14402076 ~ 14418666 (-)
AMCG00000434 NA coding upstream 253475 14539085 ~ 14542043 (-)
AMCG00000435 gskip,LOC102795054 coding upstream 261663 14547273 ~ 14547995 (-)
AMCG00000441 gstz1 coding upstream 300271 14585881 ~ 14590832 (-)
G150219 NA non-coding downstream 122126 14151588 ~ 14153846 (-)
G150119 arf6,arf6a,ARF6,arf6.2,LOC106608083,LOC105893149,LOC104956700 non-coding downstream 514375 13756516 ~ 13761597 (-)
G150115 NA non-coding downstream 529842 13739796 ~ 13746130 (-)
G150086 NA non-coding downstream 587795 13687771 ~ 13688177 (-)
G150084 NA non-coding downstream 607833 13667562 ~ 13668139 (-)
G150306 NA non-coding upstream 209849 14495459 ~ 14495660 (-)
G150427 NA non-coding upstream 604924 14890534 ~ 14891706 (-)
G150476 NA non-coding upstream 943287 15228897 ~ 15229292 (-)
G150485 NA non-coding upstream 965015 15250625 ~ 15250829 (-)
G150502 NA non-coding upstream 975777 15261387 ~ 15263576 (-)
AMCG00000425 entpd5,LOC107586906,LOC105908609,LOC106571572,LOC106608092 other downstream 14640 14245817 ~ 14261332 (-)
AMCG00000409 exoc5 other downstream 247045 14003076 ~ 14028927 (-)
G150138 NA other downstream 449263 13823954 ~ 13826709 (-)
G149847 NA other downstream 1733662 12522520 ~ 12542310 (-)
G149751 NA other downstream 2192758 12081543 ~ 12083214 (-)
AMCG00000436 NA other upstream 284352 14569962 ~ 14572432 (-)
AMCG00000457 NA other upstream 838415 15124025 ~ 15137923 (-)
AMCG00000464 batf other upstream 927792 15213402 ~ 15222743 (-)
AMCG00000475 NA other upstream 1003693 15289303 ~ 15291255 (-)
AMCG00000482 NA other upstream 1176236 15461846 ~ 15479049 (-)

Expression


Co-expression Network