AMCG00000427


Basic Information

Item Value
gene id AMCG00000427
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 14230719 ~ 14235167 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000427
CCCGGAAGGAACGCTTCCCGTGTAACTAACATTCGGAAGAAGAGGAAGCGATGAAATAGCAGACGCTACCGAAATGTTTAAGCATGacatgtaaaaaatacacaaacaaggAATGTATTAGTGAAATAAGTGAAATTAGTGAGTTTTATGTGAGATGTGGTGCCTGCgtacaaatgcaaatacatcaatatatagAGAGCATAGTTCTATGTAGCATATACTTTCAATAGAAGACTGTTTAAATGGGCACAGACGCTCTTTTACCAGTTAATAACATTGTACATGTGACTGGGAGAAACGGGCGGGCTGGACAGATAACAGCCCTGCAGCCAATCACCGCGGGAGGGTGGGGTGTGCGTCAGAGACGGGAGTCTGGGCTGGAGATAGGGCTCCTGCTAAGCATAGCAGCCTGTATATtggttgtaattaaaatgcaatattggAAGGACGATGCCCGCATCCCACACCATGTCGTTTTTTAACGAGGCAGAAAACATGGCCTCCTCTAGCGATGGGCAGGTTCCTGCAGCTGTCCGCAGTGAAGAAGGAGCTTCGACACAGTGCACAGGCTCTCGGCAGCGCCAGGGCTTCCCCCCCAGAGACGACTCGGTCTCTGATGGAGAGGTGGCACACAGCAGGCTCAATCGAAGGGATACGGACCAGCTGCTGGCCTTCCTAGAGCAGGACGGGGGCCCTGCGGGGTCAGAGCTGCACTTCTACCACAGACTGCAGACTCTGAAGgaggcgcacacacacaagctgctGCAGACCGGCAGGCTATACCAGGAGCAACTGGAGCAAAGGATGCTGCAGGACTCCCTGCTTTCTGCAAGCGATAACAGGAAGACAAAACAGGAGGATAACATTGAAGAGATCTTCAGTACCAATGGGAGGCAAAATGTACAGACTGCCTCCAGCAAAGCATGTGCATCGAGGTACGAGAGCCTGAGGAGATCTTGCTCCTTGAGTGACCTCAACTCTCAGGAGGAAGGTGTCTCTCCACAGCTTAAAGGATCTGAGAGGCCTGTCGGCATCTCAGCTGCCTGGGCACCAAGCAGGACAGTCCCCAAGCCCTTCGGCATGACCCTCAAGGAAGGCCAGAGAAGATCTCAGCTGTTCAGATCCAGAGTTTCCCAGGACCTGGAGAAGAAGCTGTCAGAGAAGAGTGAAGCCGAGGAGGCCGAGTGTCAGAAGCAGTTCCGTGCCGCCCCTGTCCCGGCCCACGTCTTCCTGCCCCTGTACCAGGACATCACGGAGGCGGGCGAGCGGCTCAGGAGGACCAGCCTGCAGCAGAGGAAAGACTTCCTCCTCTCCATGCAGAAACCCTTCAGCTTTGTGGAGAGAgtggagaagaagaaggaagagTTGAAGCAGCAGCTGAAGAGCAGCAACCCGGTCCTGCTGGAGGAGAAGTCGAAACCAGCTGAGAAGAAGAAAATCCCCAAGGCTGTCCAGGACCCAGGTGTCAGTGAGCATTTGAAAGAGGACGAACTCTACAGAAAGATTCGTATTCAGATGCGAGCCGCTGACCTGCTGAAAACCTCCTCTGCACCCATTGCGCTCAAACCCCAGAGGAAAGACCCGGAGAGCAGCAGCGGCCAGCGGATGAGAAGAGAGGCCCTGGGATTCCTGGATCAGAAGCCCACCTTCCGACCGCACACCAACACCCAGGTTCCCGACTTTGAGCGGCTGTACCAGGCCTTCCAGAGGGAGGCACTGAAGAGGGCGGAGAGGAAAGACGTGACGAGGTGTCAGCCCTTCCAGCTGCGCACTTCTCACCTGCCCCCGAGGCAGAGCCGgaaaacaccccccaccccccagGAACAAAGGTCTGTGAGCAGGACACATTTGAAGAGAAGTCAGTCCTTTAGTGGCATCCTCTCACTTTCTACGAACACTCTCCCTGTTTACACCACAGATGCCGAGAGGCAGCGTCGAGCCGCTATCAGAAACTCGCTGGAAGAAAAGGAtaacaaggagagagagagtgcgggTTGGATGAAACAGCACAGACTACAGTCtgaagcaatgaaaaaaaatgtgaacactCGAGCTAGAGCAATGGACCCACACAAGTCTCTCAAAGAGGTGTACCAGGAAAAGCTAAAGCAGCACAGGCAGACTGACCAGAAAAGGATGAAGGAATACAGGAAAGAGTTGAAGGAGATGAATAATCGCGTGAAAGGCCAGCCTTACCTGTTTGAGCAGGTCTCACAGAGAAATGCCAAGTCTGAGGCGGAGCGGCGATACAGAGACACGCTGCAGCAGGTTGGGCTGAATGAACACTTTGTGCGGAGCAAGGGGGAGACAGCTGGAGAAATACCACCCATTTTATTTGGGGATGATGAGGAGGACCAGAGCAGTATGAGTGACCAACCAAGGTCCGAGAGCGGGAGTTTACCCGAAAACCAAGCAATGTAAGACGATGGaatggagaaagagaaaaacaaagagcagGAAATGTGACTTGAGCTTTTCTTCAGATTTACATTGATAGATTATATGCAGATCCAGTTCATAAACTGGCAGTTCGtaatttacagattatatttgtttaaagttctcca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000427 True 2567 mRNA 0.52 9 14230719 14235167

Neighbor

gene id symbol gene type direction distance location
AMCG00000428 NA coding downstream 15801 14212669 ~ 14214918 (-)
AMCG00000413 NA coding downstream 63717 14165881 ~ 14167002 (-)
AMCG00000414 NA coding downstream 137435 14082501 ~ 14093284 (-)
AMCG00000408 slc35f4,LOC106593636 coding downstream 168894 14054353 ~ 14061825 (-)
AMCG00000393 otx2,LOC107085600,LOC108232166,LOC100707476,LOC107392362 coding downstream 282111 13944859 ~ 13948608 (-)
AMCG00000426 aldh6a1,LOC107664467 coding upstream 40805 14275972 ~ 14285610 (-)
AMCG00000418 NA coding upstream 108370 14343537 ~ 14350726 (-)
AMCG00000415 NA coding upstream 166909 14402076 ~ 14418666 (-)
AMCG00000434 NA coding upstream 303918 14539085 ~ 14542043 (-)
AMCG00000435 gskip,LOC102795054 coding upstream 312106 14547273 ~ 14547995 (-)
G150219 NA non-coding downstream 76873 14151588 ~ 14153846 (-)
G150119 arf6,arf6a,ARF6,arf6.2,LOC106608083,LOC105893149,LOC104956700 non-coding downstream 469122 13756516 ~ 13761597 (-)
G150115 NA non-coding downstream 484589 13739796 ~ 13746130 (-)
G150086 NA non-coding downstream 542542 13687771 ~ 13688177 (-)
G150084 NA non-coding downstream 562580 13667562 ~ 13668139 (-)
G150306 NA non-coding upstream 260292 14495459 ~ 14495660 (-)
G150427 NA non-coding upstream 655367 14890534 ~ 14891706 (-)
G150476 NA non-coding upstream 993730 15228897 ~ 15229292 (-)
G150485 NA non-coding upstream 1015458 15250625 ~ 15250829 (-)
G150502 NA non-coding upstream 1026220 15261387 ~ 15263576 (-)
AMCG00000409 exoc5 other downstream 201792 14003076 ~ 14028927 (-)
G150138 NA other downstream 404010 13823954 ~ 13826709 (-)
G149847 NA other downstream 1688409 12522520 ~ 12542310 (-)
G149751 NA other downstream 2147505 12081543 ~ 12083214 (-)
AMCG00000336 NA other downstream 2382771 11840480 ~ 11847948 (-)
AMCG00000425 entpd5,LOC107586906,LOC105908609,LOC106571572,LOC106608092 other upstream 10650 14245817 ~ 14261332 (-)
AMCG00000436 NA other upstream 334795 14569962 ~ 14572432 (-)
AMCG00000457 NA other upstream 888858 15124025 ~ 15137923 (-)
AMCG00000464 batf other upstream 978235 15213402 ~ 15222743 (-)
AMCG00000475 NA other upstream 1054136 15289303 ~ 15291255 (-)

Expression


Co-expression Network