AMCG00000428


Basic Information

Item Value
gene id AMCG00000428
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 14212669 ~ 14214918 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000428
ATGGAGAAACTGACAGCGAGAGACAAGGAGCTCATCCGAGACAGCTGGGAGAGACTGGGGAAGAATAAACTCCCCCACGGTACCGTCATGTTTACCAGGTTATTTAAGCTGGATCCCGGCCTGCTTCGTCTCTTTCACTACAACACGCCCTACAGCTCTCCCGAGGAATGCCTCTCCAGCCCAGAGTTTGTGGACCACATTAGCAAGGTCATGCTGGTGATAGACGCTGCCGTCAGTAACCTGGATGATCTGCACTCTCTGGAGGAGTACCTGGCCAACCTGGGCCGAAAACACCAGGCGGTCGGGGTCAAGACTCAGTCATTCACTGAGGTGGGAGAGTCTCTACTCTACATGCTGGAGCACAGCCTGGGTCCACTCTACACCGCCGCCGTCCGCCATGCCTGGGTCACGCTCTACGGGATCGTGGTGGAAACAATGATCAGCGGCTGGACCAAAAACGGCGAGAGGAAGGCGGACTGA

Function

GO:

id name namespace
GO:0015671 oxygen transport biological_process
GO:0043204 perikaryon cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005506 iron ion binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0005344 oxygen carrier activity molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K21893 NGB; neuroglobin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000428 True 480 mRNA 0.56 4 14212669 14214918

Neighbor

gene id symbol gene type direction distance location
AMCG00000413 NA coding downstream 45667 14165881 ~ 14167002 (-)
AMCG00000414 NA coding downstream 119385 14082501 ~ 14093284 (-)
AMCG00000408 slc35f4,LOC106593636 coding downstream 150844 14054353 ~ 14061825 (-)
AMCG00000393 otx2,LOC107085600,LOC108232166,LOC100707476,LOC107392362 coding downstream 264061 13944859 ~ 13948608 (-)
AMCG00000405 NA coding downstream 419699 13790666 ~ 13792970 (-)
AMCG00000427 NA coding upstream 15801 14230719 ~ 14235167 (-)
AMCG00000426 aldh6a1,LOC107664467 coding upstream 61054 14275972 ~ 14285610 (-)
AMCG00000418 NA coding upstream 128619 14343537 ~ 14350726 (-)
AMCG00000415 NA coding upstream 187158 14402076 ~ 14418666 (-)
AMCG00000434 NA coding upstream 324167 14539085 ~ 14542043 (-)
G150219 NA non-coding downstream 58823 14151588 ~ 14153846 (-)
G150119 arf6,arf6a,ARF6,arf6.2,LOC106608083,LOC105893149,LOC104956700 non-coding downstream 451072 13756516 ~ 13761597 (-)
G150115 NA non-coding downstream 466539 13739796 ~ 13746130 (-)
G150086 NA non-coding downstream 524492 13687771 ~ 13688177 (-)
G150084 NA non-coding downstream 544530 13667562 ~ 13668139 (-)
G150306 NA non-coding upstream 280541 14495459 ~ 14495660 (-)
G150427 NA non-coding upstream 675616 14890534 ~ 14891706 (-)
G150476 NA non-coding upstream 1013979 15228897 ~ 15229292 (-)
G150485 NA non-coding upstream 1035707 15250625 ~ 15250829 (-)
G150502 NA non-coding upstream 1046469 15261387 ~ 15263576 (-)
AMCG00000409 exoc5 other downstream 183742 14003076 ~ 14028927 (-)
G150138 NA other downstream 385960 13823954 ~ 13826709 (-)
G149847 NA other downstream 1670359 12522520 ~ 12542310 (-)
G149751 NA other downstream 2129455 12081543 ~ 12083214 (-)
AMCG00000336 NA other downstream 2364721 11840480 ~ 11847948 (-)
AMCG00000425 entpd5,LOC107586906,LOC105908609,LOC106571572,LOC106608092 other upstream 30899 14245817 ~ 14261332 (-)
AMCG00000436 NA other upstream 355044 14569962 ~ 14572432 (-)
AMCG00000457 NA other upstream 909107 15124025 ~ 15137923 (-)
AMCG00000464 batf other upstream 998484 15213402 ~ 15222743 (-)
AMCG00000475 NA other upstream 1074385 15289303 ~ 15291255 (-)

Expression


Co-expression Network