AMCG00000440


Basic Information

Item Value
gene id AMCG00000440
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 14599287 ~ 14659880 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000440
ATGTTTGtacaattgtatacaaataAGAGTGAAGATTGCACACACACCAGACCAGGGCAGGCGGAATTGAGTCAGCACACAGGGTCATCCCGCACAGTCAAGCGTTACCCGTCGTCCAATGGGCAGATCACATCCAACGCCCTGCCCAATGGGAACGGCCAGGAACACAGCCACCTGCGACCAGCAGCCAATGGCCCGGGATCAGAAACCTTTAATAATGCAGTGGCCCCAAAAGGAGCCAACCTAACAGCTAATTTAGACCGCATCAAGATTGTCTTCACCCCCATGATTTGCAAGAGGACCTGTAGCAACGGACGGTGCTTCAACAACTGTGCCAAAGGGGACACTACGACCGTTTACAGTGAAAATACCCAGAGCCATGCACCCAAATCTGGATTCCGCATTTATTTCTGCCAGATCCCCTGCATGAACGGGGGACGGTGCATCGGAAGAGACCAGTGTTGGTGCCCATCGAACTCCACAGGGAAATTCTGTCAccttcctgcccccccccctgAGAAACACCACGCTGCCAGGAAAGAGATCAGGCAGTCGGGCCGCAATTCATCATTGCACTCCATGTACACCCTGCCGCTGTCCAACCAGCTAgCCTCCCTGCACCCCTCTCTGGTTAATGTGCACATAAAGCACCCCCCGGAGGCAGAGGTGCAGATACACCAGGTGGCGCGTGTCAAGCCCGACCAGATGCCCCCCGGGTCTGATGGGAACAGCATCGGCGGCGTGCAGCAGTCTGTGCACTCGGTACAGCAGAGGTCACAGCCAGGCAACGGCAACAAGTCCACCAAGCAGCATGGAACGGGCATCGGGAACACCATCAGGACAGGAAACGGACACACCAGACCCCAGCAGAGACTGAACGGGTATGTGGGGAGATGTTTCCAAGAGACCATCGATGGGCAGTGTGGCAAACCACTTCCTGGCCTGACCAAGCAAGATGATTGCTGTGGCAGTGTTGGAGCATCGTGGGGACTGAACAAGTGTACAGAGTGTCCTCCCAAGCCAGctTATGCTGTGATTGCCAATGGCCAGGTGGAATGCCCCAAAGGCTACAAGAGAATGAACCAAACTCACTGTCAAGACATTAATGAGTGCCTAATGTCGGGGATATGTAAGAATGCAGATTGTATGAATACGCGAGGGAGCTACAGATGTACCTGCAAGGCTGGCTTCATGTTGGACACCTTACGCGgtcactgtgtctCTGACAAAGCAGTGTCATTGATACAGGGCATGTGTTACCGTTCAGTGTCGGGAGGAAGCTGCTCCCTGCATCTCTCTCAGCAACTTACCAAACAGATTTGCTGCTGCAGCCGTGTGGGCAAAGCCTGGGGCACCGCCTGTGAGAGGTGCCCACTGCCTGACACCGACCACTTTAAGGAGATCTGCCCAGCTGGCCATGGCTACACGTACTCCCGATCTGACATTCAGATCTCACTGCGggaggcagaggaagaggaaatcGCCGAAAGTTTAGACTCCCAGCACCACTATCACCACACCCCCAACACCCAGCAGACACACAGGGTGGCCAGCTCGCAGCCTGCAGTTAAGACAACACCTCATTCTCCCATCAACCTCAAACCTGAGTCTGTGGGCCAGGAGACGGCCTCCATCGATGTAGCCACCCAGGTCACAGATATTGATAGATGCTCCGCCACTCCCAATATCTGTGGTCATGGCATCTGTGTCCCCCTGCAAGGCGGTTACACATGTTATTGCAACAATGGATTTCAGCTCAACACACTACAGAGCCACTGTGTGGATATCAATGAGTGCAAGGGTGACCCCTGTGAAGGCAAAGGTCACTGTGTGAACAGCGTTGGCTCCTACACCTGCTACTGTTACACCGGCTACAGCCAGACTATCACTCAGAACAGGCGCTTCTGCCAAGATATCAATGAGTGTGACATGCCAAATAAGTGCCCTGGGAGCCTCTGTATCAACACTGAGGGCTCTTTTACCTGCGAGTGTGAAAAGGGCTACAGCAAGACAAGAAGGGGACAATGTGAAGATGTAAACGAATGTCTTCTCCCTGGAGTCTGTGCCAACGGGGGGTGTATCAACGTGGAGGGCTCCTATAGTTGCAGCTGTAGCCCAGGCTACCAGGCAACGACAGATGGCAAGAGCTGCCAAGATGAAGATGAGTGTCTCCGTCGTGACGTCTGTACTAATGGGAGGTGTGTCAATATAGAGGGCTCCTATAGATGCAGCTGTAAACTTGGTTACCAACCAACTCTAGATAATAAGAGCTGTGAAGATGTCAATGAGTGTGCAACACGTAATGTGTGCCCCAATGGAATATGCACGAATACCGAAGGTTCCTATGCCTGTTCTATTTGCAAAACTGGATACAGGAGAGCACCAGATGGACAGAGATGTGAAGATGTCAACGAATGTGCGTCCCTCTCTGTCTGCCCCAGTGGAATATGCACCAACACTGAAGGTTCCTTCTCCTGTACCGCCTGCCCTACTGGATATAGGCcaacagcagacagacagagttgTGAAGataTTGATGAATGtgaatccctgactgtgtgcccTGCTGGAGTTTGCACCAACACGCCGGGATCCTTCTCCTGCATGGGTTGTACAGATGGGTTCAGGTTATCGGAGAATGGACGCCAATGTGAAGATGTTGATGAGTGTATTCTTCCTGGAGTCTGTACCAACGGGCGGTGTGTCAATCTGGAGGGCTCGTATAGGTGCAACTGTAACGTAGGTTATCAAGCAACTGCAGAGAGTAAGAGTTGTGAAGACGTGGACGAGTGTTCTGTGGCCGAGGTGTGCTTCGACAAGGTGTGCAGGAACACCATCGGTTCCTACTCCTGTACCACCTGCAGGACGGGCTACAGGGCGTCTGCGGATGGCAGCCGGTGTGAAGATGTGGATGAGTGTTCCCTGGCAAACGTGTGTCCCGGCAGGCTTTGCAGGAACACGCAGGGCTCCTACTCTTGCAGCGACTGTGAAGAAGGGTACCAGTTGTCAGAGGATGGGTTTGGCTGTGAAGatgttaATGAGTGTCTAAGTCAAGACATCTGTGGTCCTAACCGAGAATGTGTGAACACTGATGGCTCCTTCATCTGTCCGTGCCTTGCTGGCTATGCCAAGGTCGGCACAGGTGACGATTGCCAAGatctTAATGAGTGTCTAAGTCAAGACATCTGTGGTCCTAACCAAGATTGTGTGAACACCGATGGCTCTTTCGTCTGTCTGTGCCCTGCTGGCTATGCCAAGGTCGCCACTGCCGCTGGTTGCCAAGATGTGGATGAGTGCAGCGAGGGGAGACATTGTTCCAACGGACAGTGCATTAACACGGACGGATCCTTCCAATGCAGCTGTGAAGCTGGGTTCAAGTACTCTCAGGACATCACTAACTGCGAGGGGAGCGGCTGGCCAGTGAGTGAGTACAACTTGGTCTCTGCAGATATGGATGAGTGTAAGGAGTTTGGGAGCGGAATCTGCGGCACCTGGCGCTGCGAGAACACTGTGGGCTCGTACCGATGCTTCATGGCCTGCCAGCCGGGCTTCTCCGGGGAACAAAACGGAGACTGTGACATCGATGAGTGCGTGAACGAGACTTTCTGCGGGGACCACGGGTTCTGTGAGAACACAGACGGCTCGTACCGCTGCCTATGTGACCGGGGCTACACCAACCCTCCAGGGACACCTGGGTGTGTGGACATCAACGAGTGCGAGATGAGCGCGGTGGAGCTGTGTGGGGCGGCCCTGTGTGTGAACGCCGAGGGCAGCTTCCTGTGCATCTGTCCCAACGAAGATGAGGATTTCGACCCGGAGACCAGCCAGTGCCGCAATCGCAGCATCCTGGGCCAAATAGACACCTCTGTGGAGCCCAGATTACCCTCTGACAACGAGGTGAGGAAGGAGTGTTACTACAACCTGAACGATGCAAATTTCTGTGACAACGTCCTGTCCCGCAACACCACCAAGCAGGAGTGCTGCTGCACGCAAGGCGGAGGCTGGGGGGACAACTGCGAGATCTACCCCTGCCCCATCAAAGGAAGAGATGAATACAACGAGCTCTGTCCCCATGGCGGTGGATTTCTGTCTGTGGACGGTGCTTCCCAGGGCTTCCCGGGGCTGCTGTATCAAGATGCTGATGAATGTAAGATGTTTGGTTCGGAGATTTGTAAGAGAGGTTTGTGCATAAACACGCTTTTTGGATACTCGTGTTACTGCCACATGGGTTACTACTACGATACCATCCGACTGGAGTGTGTCGATCACGACGAGTGCCAGGAGAGCACCTGTGTGGACGGCACCTGTGTCAACACTATGGGGTCCTTCAACTGCTTCTGCAGCCCGCCCCTCATACTGGACCACACCCGCCAGCGCTGCATCGCGGCCAACGCCACAGAAGAAGAGCTGCATAACCCAGATGAGCTCATCCACATGGATATCTGCTGGAAAGGCCTGACTGATGAATACATGTGCTCAGGGCCCCTGCAGGACCGAAGGACTACCTATACAGAGTGCTGCTGTATGTACGGAGTGGCCTGGGGGGTCCAGTGTGCCTTCTGTCCCCTTCCTACAACCGTGGAATATGCCGATTTATGCAACCTGCCCAGGAGCAGGGTTAACAGCGCGGACGTCCTCCGAGAGAGGCCAGGCTATGAGTATGGCCCAGGCATCGTAGATCTCGGAGGTGGTCATTACTACAACACCCCGGAGTCGGAGTACAGTCCACACGACCCGAGCGCTGGTGCCCTGTTCCCTGAGTTGGATCCCACTGATGATTACGGCTCCAGAGAGGCACATCATGGTCCCATCCTGCGTCCCAGGGAGTTCAGGCCCCGTCTGGTGGACGCCTACCGGGATCGATATGACGGGTTCGAGGGCCTGCGTGCGGAGGAGTGTGGGATCCTGAACGGCTGCGAGAACGGCCGCTGTGTCCGTGTGGTGGAAGGGTACACGTGCGACTGCTTTGATGGCTATGAACTGGAGATAACGAAAATGGTCTGTAAAGATATCAATGAGTGCGAAGACATCAGTGACAAGATCCCGTTGTGTAAAAACGGTGCGTGTGTGAACACTGATGGTTCGTATAAGTGCACGTGCTTGCAGGGCTTCGTGCCTTCATCTCAGCCCCACGAGTGCCTCCCCGAGACCCCACAGACAGAGCAGGAGGCCGGCCAGTGAGACTGGGAGCAGCCCAGTGCTGCCACCATCCCTGCTCCCTGACCCACTGCCAGCTCCAGGGGCCTGGCTCTGAAACTCCCAGATTACACAGCAGGAATGTTCCCAGAGACGAGAAAGCACTTGGGTGGGCAAGAGATGTGCAGCGAATGCATTGCAtgggatttgttttaatattttgcctTAAAGGGATTTCATACAAACAGAATACACTGAAGCATTAtacaaacacatccatttaTAATAACTTAACCATACATTCAgttttatagtttatataaCATTTCCAGTAATAAGGCAGATTTTAATGTACATACGTTTTAGGAATTTCAGAAATAttactttcttttcctttttaattatttatttttatagagtATAAAGCTTTTTACTAACAGTGCTaagttatgttttgtaaaagtcAGGATGGTTATAAGATTTGGATTTGTAGGAATTTGAAAACATGGAGGAGGAGAATAAAAGTTTTTTGCTACTTTCTGAAAGCACCAGTAACTTTATAAAAtcgataaaaaaaaactaaatctgatcTAGACTACACTGCATCCATTGTAGTCATTCTGTTTCATACAAGACCTAAAACCAACAGTACAGTGAAATTAGACAAAAGTCAGTTGTATAACCCATAATAAGCAATGAAACCACTACCGAAAGATTATTCAATTCTGTAACAATGTCCCATCATAATCATTTTTGATCAAGAAAACCATTCTAAAAGGTAGACACTAAAACATGTCCGCTTTTCTCAAACTGATTAGTAACTGACTCGTGAGCTGAAATTTAAGAAAGTGTTCTTGGGTGGTTGAACGAGGTTGTAAATGTATATGGCGCGCTTTGTTTCTTTTAGCTTCTTCCtgccaaaatgttttaaagaaatctcAGACAGGCCGCAGCTTGCTCTGTGAAAACTCTCGCTTCAACACATAACAGACGCATCCAGTATCGTatagtaaatgtaaatgtctaaGAATACCATTTATCAACTGCTATATGAATGTCTGCACGGTTTAATTACACTCTGAAGTGCAGCAGATCCCATGTGAGAACATTCCCGTAGGTCAGACTTTGTTGAAGGGGTTTGGGATATTTTGTACAGATCTAGtactatgtatttaatttgttttgttacatattttaattagctATATAGTAGAAGTACttgcaattttgtattttggatgAAAAATTCATatactctttttttaaatgccctaGCTATGTagattttatatttctgtaaaattgtTTTGAGCATATCCTTTTGTATGGGGAAACAAAATGGTTTACACTGTACCATAGAAAGTGTATGAATCCTGCCCTGTGGAGCAGACTCTGGGACTCGTGTTTAGGGTATGGCAGCCTTTTCTGCTCGTGTCCTAGAAGAGCGATCCGGTGAGTAAAAGACTCCATAGCACCGCTGTTCTTCAACACAAGGACCGAATCTTATCttgaaagacaaaatacaagtaATGATTTAAGACTTGTACCACATGACTGCGTATTAAGGTTTTACTATTGAATTTGTCTTTTGTCAACAGCGTGACCCTGACAACCACGTAATAATTCTTGTGCATTTTGACTTCTGCCTGCGTTTGAATTGTTTGAATGCTAAGTTTCTTGTCAACAAATTAACACGTGTGTAGAGAAGGGTTCTGCCAGCTCCTAAAAGTGCCAAGTATCTTTTTGAATATTATTggaggatttttctttttcattgacTGATGCCCGTAACCTGCAGTGCGTTGAGGAGAAACGCTGAATGCACCCCTGCTGCACCGGCCGTGGGCTGAACGCACGCAACGCTGCATAGCTCGTACGTCTTTCCCTAACCAACAGGAGTAAATGTTCCATTGAGGCAAAGCAATGGATGGTAACATGCACATTTTgccatgtatatatacactttttaaataatattcttaAACCATACTAAATTATAGGATTCAAATAGATCGGGGGCTAATCCCACTGTTTGAAGCTGTGGTCTggaatttgttttatacaatcCACATGTGCCTCCAACCATAGTCACTTTcagtcatgaaaataaaatcggAAAACGTAATCTGCAGCttgtctttctgtttatttctccCTAACAGCCATTATCATTTTTCAACATTCATTTCTCATGTAGTCCTCCTTAAATTAGCCTGAACTGAACAATTTAACACAGTCATCTTGGTTTTCATACGGACATGCAAAATCCCCGCCGATAACATATGCTTAAATTACAGTGGCAAAGCCTGTCTACACTGTTTAGTAACCAACGCTTGATgacttctaaaataaaaaaatccaacagCAGATAGAGACCAGACAGTTTATTCAAAAGGCCATAGTATACTTGTTTCAAGTAGCTATAAAAATATGTTGTCAGTCTCTCTTTTTGTAATATACTTagtcaaatgaaaatacaatgctCCTTTATTTTGGAGGAAATGCATTTATGTTAAAAAATTCACAGGTGAAGAAACCTGCTGTCTTTGTGGATTTCTGATCCACTCTCCTTCAAAAGCAGAAACGATTGAAAGGTCTGAAGCTTAAGCTGGTTCCACAGATATCCATATAAGGACAACATACTACATGTAACAACAGCTAGTTTTAGTGCAGAATATTAACTCAACATGACATACAAAGGTTTCCGTTTTCATAGGATACTAAGCAAGTAAATTTAGTGTTTTCTAGCTCACAACAGAAGACCAaagaatgtaataaaaatatatacataaacaacacacacaaaattaaagaaaaactcaAAGTTAACGGACAACGtgat

Function

GO: NA

KEGG:

id description
K08023 LTBP2_3_4; latent transforming growth factor beta binding protein 2/3/4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000440 True 7978 mRNA 0.48 36 14599287 14659880

Neighbor

gene id symbol gene type direction distance location
AMCG00000441 gstz1 coding downstream 8455 14585881 ~ 14590832 (-)
AMCG00000435 gskip,LOC102795054 coding downstream 51292 14547273 ~ 14547995 (-)
AMCG00000434 NA coding downstream 57244 14539085 ~ 14542043 (-)
AMCG00000415 NA coding downstream 180621 14402076 ~ 14418666 (-)
AMCG00000418 NA coding downstream 248561 14343537 ~ 14350726 (-)
AMCG00000438 arel1,LOC107704359 coding upstream 77577 14737457 ~ 14751940 (-)
AMCG00000450 NA coding upstream 121322 14781202 ~ 14790208 (-)
AMCG00000452 NA coding upstream 151037 14810917 ~ 14821481 (-)
AMCG00000451 NA coding upstream 162981 14822861 ~ 14824609 (-)
AMCG00000454 NA coding upstream 179359 14839239 ~ 14858988 (-)
G150306 NA non-coding downstream 103627 14495459 ~ 14495660 (-)
G150219 NA non-coding downstream 445441 14151588 ~ 14153846 (-)
G150119 arf6,arf6a,ARF6,arf6.2,LOC106608083,LOC105893149,LOC104956700 non-coding downstream 837690 13756516 ~ 13761597 (-)
G150115 NA non-coding downstream 853157 13739796 ~ 13746130 (-)
G150086 NA non-coding downstream 911110 13687771 ~ 13688177 (-)
G150427 NA non-coding upstream 230654 14890534 ~ 14891706 (-)
G150476 NA non-coding upstream 569017 15228897 ~ 15229292 (-)
G150485 NA non-coding upstream 590745 15250625 ~ 15250829 (-)
G150502 NA non-coding upstream 601507 15261387 ~ 15263576 (-)
G150504 NA non-coding upstream 611516 15271396 ~ 15273123 (-)
AMCG00000436 NA other downstream 26855 14569962 ~ 14572432 (-)
AMCG00000425 entpd5,LOC107586906,LOC105908609,LOC106571572,LOC106608092 other downstream 337955 14245817 ~ 14261332 (-)
AMCG00000409 exoc5 other downstream 570360 14003076 ~ 14028927 (-)
G150138 NA other downstream 772578 13823954 ~ 13826709 (-)
G149847 NA other downstream 2056977 12522520 ~ 12542310 (-)
AMCG00000457 NA other upstream 464145 15124025 ~ 15137923 (-)
AMCG00000464 batf other upstream 553522 15213402 ~ 15222743 (-)
AMCG00000475 NA other upstream 629423 15289303 ~ 15291255 (-)
AMCG00000482 NA other upstream 801966 15461846 ~ 15479049 (-)
AMCG00000469 LOC108413331,LOC107549545,LOC107582175,LOC108269530,LOC108423442 other upstream 838292 15498172 ~ 15527390 (-)

Expression


Co-expression Network