AMCG00000442


Basic Information

Item Value
gene id AMCG00000442
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 15042140 ~ 15065371 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000442
ATGCAACTGATGCAACTGATGCGCTGTGCTTCTGTCCCACTGCCAGCAGAAGCAGACCACCAGGGTACACCTTGGCCTCTGGGTGTGATGGATGAGCTGGTGCATGACCTGGCGTCTGCGCTGGAGCAGACCTCGGAGCAGAACAAGCTGGAGGAGCTGTGGGAGGAGATGGTCCTGAGCCCCCTGCAGCAGCGGCGGCAGATCCGGCGGCGGCGGGGCAGGAAGCGGCGCTGCGACTCGTCCCACTCGCTGGAGCACGCGCGCTGCTTCAGTGAGGCCTCCGAGTCCAGCCTGGACGAGGCCGCCAAGGACTGCCGCGAGAACGCCGCTGCGGCCGCCAACTTCAGTGACTCAGACGACATGATCGTGGCAAAGAGGCggccctccttctcctcctccctcaaGAGCAAGCAGCACTCCTGGCCTGAGTCCGACTCCTTCACCGAGAACACGCCGGGGCGGCCCATGCGGAGGCGGCGGAAGGTGAAGCGCATGACCTCTGATGTGACGGTCAGCCTCCAGCAGAAACTCAAGGTGTCTGAGCTGGACAGGGAGCGGACGGGGAACCACAAGTCGGCCAAGAAGCAACGGCTGTCCAAACTGAAGAAGAGCGGCAGTCCCTGGGTCGGTGGCCACGAGGCGGTGGGCGGCAGTGGGCTGATCAACGAGGAGGCCTGGAAGGGAAACATGATGTTTGAGGCAGAAGAGCAGAAAGAAGCCTCCGATGAAAACATGTCAGAATGTGACACCAGCAGTGTGTGTAGCAGTGATCCAGGGCTTTTCACTAACGATGAGGGAAGACAAGGAGACGACGAGCAGAGTGACTGGTTCTTTGAAGGAGAGTGTGGCCCTGGGATTGGGGTGCCCGGTCTCCTGCCCAGTTGGGAGACGGACTCTCAGCCGGAGTTGGAAGCCCTGGATTCCAGTCTGGAGAAGCTCGCCTCCCCCACCTTCCTCCAGCCGGCCCGGCCAGCTCAGAGAGGGTATCATGCCCGACTCAACCGCCTGCCAGGAGTGGCTGCCCGCTGCATCCGCAAGGGCAGAAGGAGACTGCCGGGAAAGGATAGCAGTGTTGCAGCCATGGCTGCCGAGAGAATGAACCATTTCTCCCAAGATCCGTACCAAAAAGATTTTTGGCTGCCGTCGATTGGAAAAAGAGACTGGCACCAGTTCAACCCACTGTCTCCACTCTATCCGGTGGACATGGTGTCTGATGGCTCGCACCGGCGTTGTTCCTCAGCACTGTGTAAAAACAGGCAGACAAGCGTGCACCTGGGATTACTTTGTACTGGAGACAtcaagagaagaagaaaaactacAGCTGTGCCCAGTTCTGCAGCAGCCTGTACTCCATTCCACGAGGACAGCCTGGGGGAGGCGACGGAGAGCCCTGGGAACGACACCAGCTCCCTCACCATGGAGTCGAccagaggagaaggagggggacCCCTGCCGTCCGAGAAACAGGACTTCATCAAGCCGGGGAACTTCTTTAACTCGCAGAGGGAGCAAGAAGAGGACTTGAACTAA

Function

GO: NA

KEGG:

id description
K17569 GPATCH2; G patch domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000442 True 1530 mRNA 0.60 9 15042140 15065371

Neighbor

gene id symbol gene type direction distance location
AMCG00000446 esrrb coding downstream 65718 14954668 ~ 14976422 (-)
AMCG00000445 esrrb coding downstream 98961 14939745 ~ 14943179 (-)
AMCG00000444 vash1,LOC106589786 coding downstream 151610 14881250 ~ 14890530 (-)
AMCG00000453 NA coding downstream 173483 14862756 ~ 14868657 (-)
AMCG00000455 NA coding downstream 181316 14860339 ~ 14860824 (-)
AMCG00000459 ift43,LOC106590872 coding upstream 26771 15092142 ~ 15108451 (-)
AMCG00000458 ttll5 coding upstream 76025 15141396 ~ 15180517 (-)
AMCG00000466 flvcr2,LOC108242486 coding upstream 121828 15187199 ~ 15211871 (-)
AMCG00000463 atf3,jdp2,LOC106611045 coding upstream 164917 15230288 ~ 15242153 (-)
AMCG00000467 NA coding upstream 187921 15253292 ~ 15255829 (-)
G150427 NA non-coding downstream 150434 14890534 ~ 14891706 (-)
G150306 NA non-coding downstream 546480 14495459 ~ 14495660 (-)
G150219 NA non-coding downstream 888294 14151588 ~ 14153846 (-)
G150119 arf6,arf6a,ARF6,arf6.2,LOC106608083,LOC105893149,LOC104956700 non-coding downstream 1280543 13756516 ~ 13761597 (-)
G150115 NA non-coding downstream 1296010 13739796 ~ 13746130 (-)
G150476 NA non-coding upstream 163526 15228897 ~ 15229292 (-)
G150485 NA non-coding upstream 185254 15250625 ~ 15250829 (-)
G150502 NA non-coding upstream 196016 15261387 ~ 15263576 (-)
G150504 NA non-coding upstream 206025 15271396 ~ 15273123 (-)
G150497 NA non-coding upstream 210592 15275963 ~ 15278056 (-)
AMCG00000436 NA other downstream 469708 14569962 ~ 14572432 (-)
AMCG00000425 entpd5,LOC107586906,LOC105908609,LOC106571572,LOC106608092 other downstream 780808 14245817 ~ 14261332 (-)
AMCG00000409 exoc5 other downstream 1013213 14003076 ~ 14028927 (-)
G150138 NA other downstream 1215431 13823954 ~ 13826709 (-)
G149847 NA other downstream 2499830 12522520 ~ 12542310 (-)
AMCG00000457 NA other upstream 58654 15124025 ~ 15137923 (-)
AMCG00000464 batf other upstream 148031 15213402 ~ 15222743 (-)
AMCG00000475 NA other upstream 223932 15289303 ~ 15291255 (-)
AMCG00000482 NA other upstream 396475 15461846 ~ 15479049 (-)
AMCG00000469 LOC108413331,LOC107549545,LOC107582175,LOC108269530,LOC108423442 other upstream 432801 15498172 ~ 15527390 (-)

Expression


Co-expression Network