AMCG00000450


Basic Information

Item Value
gene id AMCG00000450
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 14781202 ~ 14790208 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000450
ttcagataacgTCAATGTCCGGCTTGACAGCATTATCAAATACATTGATTCTGGCCCCTATTCGTTAAATTAGGTCattcaaaaaaattaaagaaaactgcCTTCTGACCATGAACCTCAGCATGTCAGATCAGAACATGCATACCTCCAGTGAAAACTATCTGGACAACGACAAAGGAGAACTGGTGCACTCTTCCTTCAGACGCAACGTGTACGATGAATCTCTGAGCCTGTACTCAAATGGATCCATCATTTCCCAGCTCCTGCGGAAGACGATACAGAACAAGAGGTCTCTGGATGAGAGTCCGTACTATCTCCCAGCCACTGCTGTTTCTAGCTCCACAATGGTGGATTCCAGCCAGGAGGACAGAAGCAGCAACTCGTCTAAAGACAGCACTATAGAGCCACTATCTCCTGGTAGCCATCCTTCTACCACCGCCAGCTCTGAAGGGGACAAACCATTAAATGAGCACCATGAAGCCAAACGTGCCAGGGTGGAGAACATTATCCGTGGCATGGCAGGGTCCCCCAATGCCAGGGTTCCTGGAGAAGGAGACAGGCACCAAAGTGCCACGGACATGCGAGAAACCTACAGGGAGAACAAGAGGAAACAGAGGCTTCCCCAGCATCAGAACCACAGCCTAAGTGGAGCCCCAACACCCAGCAGAGCCAACAGTAAGGATGAAGAGTGCCATAAGCTAAAAGAGCAGCTGCAAGTCATGCAGAGGCTTTTGAGGCAACTCCAAGAGAAGTTCTATCAAGTCTATAACCTGAGTGACACAGAGCACGAAGACAGGGAGGAGAGAGGTGAGGCCAGCTTTATAGTGCATGGCAATAGCATTCAGAACCAGGAACTTCTAGAAACCTCCGACTGTGAGTTTCACATGGATCCTGACCATGACTTTGAGAAGAATCgtgaacattttaaagtgaCACAGAACGAGAGATTGCCAAATGACCATAACCCCCTGATGTTGTACACAGAGGGCAGGAATCTATCGGAGGCTCTGAAATCGGAGCTTACAAGAGCTGTGAATGAGAGTGTAGACTCAGTACTTAAAAAATTCACTTCTTCGCTGTTTAGTCAGTCTTCCCAACCTAACATGGGGCAGACTTCAGTTTCTGGTAACATGGAACCTGAAAGCAAAACCCTAACTAGTTCTCAAGAACTTTCAAATACTGAGAAAACCATCAAACCCAGACCCTTGGAATGTTACGAGGGCACTGATGTTCACGATCCTGAAGACCAAACCGAGGCTTTGTCATTGGTTGTTCGAAAGCCATCTCCGAGTCACCCTGGGTCTGTAAACCAAGTCCTGAAAAGACCGTACCACTTACATCAAACCCCCTTTCAGTTCAACTATAGCACTGCTCTGCACGAAAACCAGATTCTTGAGCACCTCTTGAAGTACGGCCCTCACGGGAATTTCAGAAGCCTTCCTTGCATGCCCCCAGCAATGGGCAGGTCCTCACCAGATTCAGTGGACATGCCCTGGGATGTCATTAAGGTGCGGTCGAAAGTAAGCTCCAGTCACCTGAGTCACCAAGGACGTCCAGCAGCTTTGGGGCAGGTGCCAGTGGACAGCATGTGCCATCCACATGTCAAAATGGAGTGCGGGGATCTACAGAACATGACTGAGAGGAACCCCTACATGTCACTCAGTCTAACTCCAAACCACCTGAAGAAAGCAAAGCTGATGTTCTTTTATACCCGCTATCCCAGTTCCAATGTACTGAAAACCTTCTTTCCAGACGTCAAGTTCAATCGCTGCATCACTTCCCAGCTCATCAAGTGGTTCAGCAACTTCCGCGAGTTCTACTACATTCAGATGGAGAAGTTTGCTCGCCAAGCCATTGTGGACGGAGTGAACAACGCAAAAGATCTCTCCATTTCAAGGGACTCTGAACTATTTCGAGCCCTCAACATGCACTACAATAAAGCCAATGACTTCCAGGTTCCAGACAGGTTTCTTGAAGTTGCAGAAATTACCCTGCAAGAGTTTTTCAATGCCATTTCCCTGGCAAAAGATTCAGACCCCTCCTGGAAGAAAGCGATCTATAAAGTCATCTGTAAATTGGACAGCGAGGTGCCGGATGACTTTAAATCTTCAGCCTGCTTGTAGGAAGAGCTGGTTAATGCTGAGACGCAGATGGCTCCAGCTGAGTACAATGCcatcaggatttttttttttttttatgatcacATACACATTATTAAGGAGTATATATCATACCACCTAAcatgatattatatataattgttgcCTATTTAACTAAGAAATTTGCGGTTTCTTTGGAATATTTTtaatactggaaaaaaaatatttaagtattgAATTTTTCTAAGGGTTGTTCAgtcatagtttttattttagcaacaataacaggaaacaaatgtctattatgtatgttttttgtagttattgttgataaaatacacatttaattatttctcattCTAGCAAGGAGATACAAAAATTGTAGCAGAAAAAACTTTTTGAGTTTACTCATGGATGTCAGCATTTTCTACTGGTTATTTAACATTAGTAATTTTATTATGTAGTTCTTATTAGAAGTTGTGAGGATAGACTGCATGTCTAAAACCAGACATCAGAGACAAGATCTTACGCTATGATTTGAACATCTCCATTCATGCTAGATCTGTTAATGTGGTAGTCTATGTAATACTTGACTAGCTATAATCATgcacaacatatttatttactttcataatttaaatatccaaaaatacaatactgatTACCATAtggatttgtttgaaatgttcatATATCATATTCAGATACCAAAATGCATTCACATTTAATCTATAGAGTGGGGAATAAAGTTCACAAAGCAAGCAGCAGTTTTATCATTCAGTTTTTGACTTTACTTGGAAGAAATTCACAAGGTCCTCAGATTAACATTAAAAGAGCATGAGAAGGGAAATTTGACTGCTGTCCATCTGCACATTTTCCTGGGGAAAGTTCACACTTATGCATTAAGACCAATAAGGACTACATGAAAGTTACCAACAGATAGACAACTACAGACTGTATCTTCTGATCGGTCTTTAGTAAGCATCCTCAGTCAGAAGGTACAGATGGGATGGAATGGCGTGGGGCCAGCATGTCATACCATCAGAcagtaatttgtgtttttaacggACATACCTACCTCATCAGTTGTTTGGACCATGATTGCTGTCCCATTTAATCAACCTCAAGTTCTGTGGACCTCCCAGCCTAACATCACATACATTTATGTAGCTAACATGCAGATTACGATCATTTCAGTACTTCCTTTGGCAGCCTTAAATGTCACACTGATATGGGATACACCAAGTATTCATTCTGCATATCCTGTATTGCTTCTAATGGGAGACATGCATGCTGCCAGTTTCTAATAATTAAATCCTCTGCTTTTGAGCTGATCTACAGTAAAAACAAGTTACAAGCAATTATCACATTAGTACtttcataaacaaaaatgttgcattattaaagctagtccctgtgtgtgtatattgttttttataatattttgaaaatatagattatttctacctgatctgtgctttttaattaaactgtaggAATTAACACAAAGGACTAAtctaaacaacaataataatagagacCCCCAAAAGTAGGAGACTTAATTTTGAAATTAGCAACAATATATCTTATGTATATAAAGTAGCTTGAAAAATCTGTGCATTTGCTAATGGCATTTAGATAACATggtgtaaaaatgttaaaccgTTTTACAGTTGTACCATTGCTTCTAATCGGGGATCTCCACCTGTACAGAACAGTATTACTTCAAACATTTGTACGGTCTCATCAGTTTTCCCACACATTTTTCCATAGTTGTTGATTAAACAAActatgacagaaaataaaattattaattactcaAAACA

Function

GO: NA

KEGG:

id description
K20211 PROX1; prospero homeobox 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000450 True 3925 mRNA 0.41 4 14781202 14790208

Neighbor

gene id symbol gene type direction distance location
AMCG00000438 arel1,LOC107704359 coding downstream 29262 14737457 ~ 14751940 (-)
AMCG00000440 NA coding downstream 121322 14599287 ~ 14659880 (-)
AMCG00000441 gstz1 coding downstream 190370 14585881 ~ 14590832 (-)
AMCG00000435 gskip,LOC102795054 coding downstream 233207 14547273 ~ 14547995 (-)
AMCG00000434 NA coding downstream 239159 14539085 ~ 14542043 (-)
AMCG00000452 NA coding upstream 20709 14810917 ~ 14821481 (-)
AMCG00000451 NA coding upstream 32653 14822861 ~ 14824609 (-)
AMCG00000454 NA coding upstream 49031 14839239 ~ 14858988 (-)
AMCG00000455 NA coding upstream 70131 14860339 ~ 14860824 (-)
AMCG00000453 NA coding upstream 72548 14862756 ~ 14868657 (-)
G150306 NA non-coding downstream 285542 14495459 ~ 14495660 (-)
G150219 NA non-coding downstream 627356 14151588 ~ 14153846 (-)
G150119 arf6,arf6a,ARF6,arf6.2,LOC106608083,LOC105893149,LOC104956700 non-coding downstream 1019605 13756516 ~ 13761597 (-)
G150115 NA non-coding downstream 1035072 13739796 ~ 13746130 (-)
G150086 NA non-coding downstream 1093025 13687771 ~ 13688177 (-)
G150427 NA non-coding upstream 100326 14890534 ~ 14891706 (-)
G150476 NA non-coding upstream 438689 15228897 ~ 15229292 (-)
G150485 NA non-coding upstream 460417 15250625 ~ 15250829 (-)
G150502 NA non-coding upstream 471179 15261387 ~ 15263576 (-)
G150504 NA non-coding upstream 481188 15271396 ~ 15273123 (-)
AMCG00000436 NA other downstream 208770 14569962 ~ 14572432 (-)
AMCG00000425 entpd5,LOC107586906,LOC105908609,LOC106571572,LOC106608092 other downstream 519870 14245817 ~ 14261332 (-)
AMCG00000409 exoc5 other downstream 752275 14003076 ~ 14028927 (-)
G150138 NA other downstream 954493 13823954 ~ 13826709 (-)
G149847 NA other downstream 2238892 12522520 ~ 12542310 (-)
AMCG00000457 NA other upstream 333817 15124025 ~ 15137923 (-)
AMCG00000464 batf other upstream 423194 15213402 ~ 15222743 (-)
AMCG00000475 NA other upstream 499095 15289303 ~ 15291255 (-)
AMCG00000482 NA other upstream 671638 15461846 ~ 15479049 (-)
AMCG00000469 LOC108413331,LOC107549545,LOC107582175,LOC108269530,LOC108423442 other upstream 707964 15498172 ~ 15527390 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000429_00023433_00028013 NA coding CI01000429 null 23433 ~ 28013 (+)