AMCG00000457


Basic Information

Item Value
gene id AMCG00000457
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 15124025 ~ 15137923 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000457
GCCATCCTAAATGCCCAGCCTCCATCTCCTGCTGCCCCCAGTTCTCTGTCTGCCAGCTCCTCCAGCCAGTGGCCCCGAGGACCGGCTAGCTTGCCCTGGACAGGCCGGCCCCCAAAGAGCACCACCTCCCAGGGCCCCCCCATCCTGGCACCCAAACCACCCAGCAGCAACAGGGAAGGAATCACCCGGAAAACGGCCACCCAGCGCCTCAACAAACTGGCTCCTTCAGAAGGTCACACCAATGGGACTTTACCTAACACACACCATGTTGTCTATGAGCAGATCTCTGGGAACTCCAGTCTGTCTGGTTATCACAGGCTGCTGCAGGGCAAGAGCAAGTGAAAGCCGTGTGTCTGTTCTTCCACTTGAAATGAGACGCATCTGAGCCATCTGGGCCTGGGGACGGTCTTCAAGTGTGTACTGCTCTGGACCGGTTTCTAAAAGAAGCAAAATCTGGCCACATGTTCCTGCTGAATCTGGGAGCAGTCCTGAAGTCAGAAACAAAAGGGAACAAATTCATTTTTCCTGGACTTAATCTGACTAAAAACTGCTTTGGGAGACTTGATTTCAGATGTATTCTTCAAATATCCGGTGACCCATTCTGTATGAACCCTGCAGGATGTTTGATTTAACCACCTTTTGCTGGGATATgatgcaggttttttttctgGTCAGGATTTGACAACCGTGTAAGGAATCTTTCGACTGGATACGAGCTGATGTCCGTTGCGCTGTCCAGCCCTTCACCGTCGCCTCCTCTTTCGGCCCCCGAGCGGCAGTTAATCCCGGTTCTTCGATGCGATCGACACCGCAGAAGGACTCGGCTGACAGATGTATGTGAACAGCTGCTCATACACACATTCTGGGTGCAAATGGTCCGGCAGCATGTGCACCAATCACCATGTCCCTGAGACAGTCACAGACCTCCAGAAAACTAACAATGACTTGACCCTGTGATCCGCTGTACTAGCACTGCTGAAGAGATTTGCTTTGGGGGCTCCAGAAACTGTCCAGGCTCCTTACACAGtcaaaaacaaactacactTACAGCCATTAGATTACTTACCACTGAGCAAActgaatttaacttttttttttttaatctagtaATGATTTCCACCATGCCTTTGACACAGTCTGgttgcaattatatttatttgtcatagtattttatttattttttatgtaccAATGGCAGACTTCTGAAAAACCTGTGAATAGCTAGCCCTTTACAAATCTCCTCAAAACTATATATTCTCACCCTTAACAGTAAAgagattaactttttttttttttttttaatgaagccCAGTGATAAGGGGGTCAGTTTTTTCCTGATGCAATGAAAAATGATTTGAATGATGCTGCTCTTTTTGAATGTTGAAATGCTTCAGAGGATAGAAGTTTCCCATTGTCTTCTTTGAAACTTTTACAGGACACATGGGCCAACACGTGTGCAGCCTCCAGATTCCCTTCTTTACACATCTGATTGAATATccttctgtttgtttatgtatactGGGTCCATAAATTgatgatatacatttttttgtttttaatggttcagaaaatacttgaaattTGTgctttatactttttatttttatttttaaatcaagcaaTATGTAAggctttaaaatgacatttattcCTTGGTTTTATGCTGAAAATATTTAGAGAGCATATTCATGGATctttccagtgtgtgtgtttgtatatatatagacaaGTGGCACACTGTATCACTGTTTCAGTAAATGTCTTAAATGAACCGAGTCACTTTAACATCTGTGCCACTGAGGTTTCCATATTGAAAGGTTTCAATACATTCGATGATAAATTCTATTATCGGATGTTTTTCTAGATTCCTAAAAGTTATGATCGATAATATATAGTGGTGTTTTACTGTGTTACACATCCACAAACGTATGGTTTATATAGCTTAGAGTTTAAAGCACCAATTTTTAAATGTCGTCCTCAGAAACAGGCCCACCCCAGCCAGTGAGGACCAGTGGCAGTGTGTCCCAGttttagatgtttttctttatttcatgttttacctCCAGAAACAAAGAGCTCTCTTTGTACACAGGAATTGCCATTTTAAGCCTCAATGTTGCGAGTGATTCAGAtttttaatcaatgtttttaatcatgttAATGTGTGCAATGAAAGTTAttactggtttattttttagcagacttattttcataataaatttctttacaaaatgaaaataaaaaa
>TU189360
TTAGAGAGCATATTCATGGATctttccagtgtgtgtgtttgtatatatatagacaaGTGGCACACTGTATCACTGTTTCAGTAAATGTCTTAAATGAACCGAGTCACTTTAACATCTGTGCCACTGAGGTTTCCATATTGAAAGGTTTCAATACATTCGATGATAAATTCTATTATCGGATGTTTTTCTAGATTCCTAAAAGTTATGATCGATAATATATAGTGGTGTTTTACTGTGTTACACATCCACAAACGTATGGTTTATATAGCTTAGAGTTTAAAGCACCAATTTTTAAATGTCGTCCTCAGAAACAGGCCCACCCCAGCCAGTGAGGACCAGTGGCAGTGTGTCCCAGttttagatgtttttctttatttcatgttttacctCCAGAAACAAAGAGCTCTCTTTGTACACAGGAATTGCCATTTTAAGCCTCAATGTTGCGAGTGATTCAGAtttttaatcaatgtttttaatcatgttAATGTGTGCAATGAAAGTTAttactggtttattttttagcagacttattttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000457 True 2245 mRNA 0.41 3 15124025 15137923
TU189360 False 538 lncRNA 0.35 1 15124059 15124596

Neighbor

gene id symbol gene type direction distance location
AMCG00000459 ift43,LOC106590872 coding downstream 15574 15092142 ~ 15108451 (-)
AMCG00000442 NA coding downstream 58654 15042140 ~ 15065371 (-)
AMCG00000446 esrrb coding downstream 147603 14954668 ~ 14976422 (-)
AMCG00000445 esrrb coding downstream 180846 14939745 ~ 14943179 (-)
AMCG00000444 vash1,LOC106589786 coding downstream 233495 14881250 ~ 14890530 (-)
AMCG00000458 ttll5 coding upstream 3473 15141396 ~ 15180517 (-)
AMCG00000466 flvcr2,LOC108242486 coding upstream 49276 15187199 ~ 15211871 (-)
AMCG00000463 atf3,jdp2,LOC106611045 coding upstream 92365 15230288 ~ 15242153 (-)
AMCG00000467 NA coding upstream 115369 15253292 ~ 15255829 (-)
AMCG00000465 NA coding upstream 141566 15279489 ~ 15288455 (-)
G150427 NA non-coding downstream 232319 14890534 ~ 14891706 (-)
G150306 NA non-coding downstream 628365 14495459 ~ 14495660 (-)
G150219 NA non-coding downstream 970179 14151588 ~ 14153846 (-)
G150119 arf6,arf6a,ARF6,arf6.2,LOC106608083,LOC105893149,LOC104956700 non-coding downstream 1362428 13756516 ~ 13761597 (-)
G150115 NA non-coding downstream 1377895 13739796 ~ 13746130 (-)
G150476 NA non-coding upstream 90974 15228897 ~ 15229292 (-)
G150485 NA non-coding upstream 112702 15250625 ~ 15250829 (-)
G150502 NA non-coding upstream 123464 15261387 ~ 15263576 (-)
G150504 NA non-coding upstream 133473 15271396 ~ 15273123 (-)
G150497 NA non-coding upstream 138040 15275963 ~ 15278056 (-)
AMCG00000436 NA other downstream 551593 14569962 ~ 14572432 (-)
AMCG00000425 entpd5,LOC107586906,LOC105908609,LOC106571572,LOC106608092 other downstream 862693 14245817 ~ 14261332 (-)
AMCG00000409 exoc5 other downstream 1095098 14003076 ~ 14028927 (-)
G150138 NA other downstream 1297316 13823954 ~ 13826709 (-)
G149847 NA other downstream 2581715 12522520 ~ 12542310 (-)
AMCG00000464 batf other upstream 75479 15213402 ~ 15222743 (-)
AMCG00000475 NA other upstream 151380 15289303 ~ 15291255 (-)
AMCG00000482 NA other upstream 323923 15461846 ~ 15479049 (-)
AMCG00000469 LOC108413331,LOC107549545,LOC107582175,LOC108269530,LOC108423442 other upstream 360249 15498172 ~ 15527390 (-)
G150729 NA other upstream 1667272 16805195 ~ 16834326 (-)

Expression


Co-expression Network