AMCG00000458 (ttll5)


Basic Information

Item Value
gene id AMCG00000458
gene name ttll5
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 15141396 ~ 15180517 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000458
GATCACCCTTGCATAGCTTGGAGTGGGAGCAGCAAGAAAATCCCAGTTGTCGTTTTCCATGCGGAAGCAATAGTGACTAAAGATGGCAACATCCGGACTGTTGGAGAACGGTATCATTTGGCTTTCAAGATTGTCCGGACGGAGAGTCGTCTGGTCCGCAGCATTCTCACTGTTCATGGATTCCATGAGGTCCATCCGAACAGCAATGATTTCAATCTGATGTGGACAGGGTCTCATCTCAAGCCTTATCTCCTCCGCAACCTTCTGGACTTCCAGAAGGTCAACCACTTCCCCAGATCATATGAACTGACACGGAAAGACAGACTTTACAAAAACATCCAGCGCATGCAGCAAACCTATGGTTTTAAAAACTTCCACATTGTCCCTCAGACGTTCATGCTTCCATCTGAATACCAGGAGTTTTGCAGTGCCTACTCCAAAGACAAAGGTCCATGGATAATTAAGCCCGTAGCTTCTTCAAGAGGCCGTGGTATTTACCTCGTTAGCAATCCCAACCAGATTCCATTAGACGAAAACATTCTTGTTTCACGCTACATCAGCAATCCATTATTGATCGATGATTTCAAATTTGATGTACGTTTATATGTCCTCATTACCTCCTACGAACCTCTGATAATCTATCTCTATGAAGAAGGACTGGCAAGGTTTGCAACAGTTAAGTATGACCGTGCAACAAAGAACATCAAGAACCAGTTCATGCACCTCACTAACTACAGCGTGAACAAGAAGAGCAATGACTATGTCAgCTGTGATGACCCTGAGGTAGAGGATTATGGGAACAAATGGAGTATGAGCGCCATGCTGAGGTACTTGAAGCAAGAAGGCAAGGACACAACATTGCTGATGAGCCAGGTTGAGGATCTCATTATTAAGGCGTTACTAAGTGCCGAACTGCCCATTGCCACAGCCTGTAAGATGTTCGTGCCACACCGGAACAACTGCTTTGAGCTCTATGGCTTTGATGTTCTCATTgactcaaatctgaaaccttgGCTGTTGGAAGTGAATCTTTCCCCTTCCTTGGCATGTGACGCACCTTTGGATCTGAAGATCAAAGCCAGCGTGATTTCAgacatgtttactttagtgGgCTTTGTTTGTCAAGACCCGTTACAAAGACAACCCAGAACAGGGAGATTGCCTCTTGATGCCGGCTCCAGGTACCAGACTCACAGAACCCAGCGTCAGCGACCCTTGTCAGCCAGCGATGTGGATTCAAATGTTGCGAAAGAGAAGCAAGCTGGGAAACAAGGTGGAAGCACTTTGGGGTTGACAACAGATGAGCTCAAAGTCCTGCGGCGTATAAAGGAGGAGCACGAGAGAAGGGGGGGGTTCGTTCGTATCTTCCCTACGGCAGACACCTGGGAACTGTACAGTGGCTATCTGGAGTATAAGACATCCATGAATTACATGTTGGCAACAAGACTCTTCCCAGAGAAaaaCGGTTTGAACGGCCATGTGGTGCTGAGTGTCAACGTGCTTCATGCGGAAGCGCGGCAGCACGTGCTTCAGTACGAACGGAAACTGCTGTCACTGGAGGCGCGGAAACGCAGGAGGCGGCACCTCGCAGCACGGTCCACACTTGGAAAGAAAAGAGGAGCTGCAAAAGGGCGTAAGGCCTCGTCTCCAGAGACTACAGACACCGATGAAGATGAGGAGTCTGgagaagaagagggggaggaagaggaggaggaggaggatgaagacgTAATGCAGGCTCCTCCACAGAAACCCAGCATTAACAAAGACAAAGCTCCTCAGCTGCCTTTGACAGCTGCTTCTTCCACTGCGCCCCAGAAACTGCTTAAGGACCCACCGCACAAGACCGCAGACAAGACTGTCAAACCAGTGCAGCCGAAATCTAAAGTCAACCTCCTGCACATCCTTCAGCAGGGCTGGAATCTCAGCAAAGTGCAGGCCCGGATGTCTTTCTCCTCCTACCTACACAGAGTTCAGATGAGACTTCTGGCAGAAAGCAAGGGAAACGACAGCTCAGCCTGGCCAGAGAGAGACGATGAGCAAATGGAGCTGGTGATTCGGTTCCTTAAACGTGCTGCGAGTAACCTCCAGCAGGAGCTGAAGATGGTGTTACCAAGCCGGAGACTCCCCCTCCCGGACCGGTGCCGCATCCTCTCTCACCAGCTGGGGGAGTTTATCCACTGCTACAACAAGgaGACAGAGCAGATGGTGAAAAAACTGGAGAATCTTAAAGACGAGGAACACTGCATCATCAACCCTGATGTTTTCCAGGAGTTTGTCAAAGAAGCTAGCGAGAGCGACCTCGAGGAAGTCCTCACATATTAcactcacaaaaacaaatcggCAAATGTCTTCCTGGGGACGGGATGCAAGAGTGCCAAACCTGGCAACGGTAAATCTACGGAACAGGCTGAAAACAACAGCCAAAAGGGTAAGCTCCTTGCTTCCCAGCTGAAGAGCTCTGTGCCTGCACAGTCCAGATCTCACATGGCGGTCTTAGACAGCTCCCACATTCACGTCCAGCACACCCCTCCCACCTCCGTGCCTCTCTCTGCCCAGCTGGCATCCGCAGCCTCCGCTCCCCCTCAGAGCTCCTGCCCTCCTCTGGCCCCCGCCACCCTGCCCAGGACTTCCTCGCTGCTGACCAGGCCCAGCTCAGCCTCTGTCTCGGCACAGAGCGGCCACACCGCCCAGCCTCTGCAGCGCAGTAGGTCCAGCAGCTACAGCAACCAGGGCAGCGTGTCCTCCATGCCCAGGGCCGTGCACATCTACAGCCAGAGACTGTCCCGGCCACCCTCGGCACGCTTCGGTTCAGGTCGGAGCAATGCCAGCAGGACTCAGCCTGGGTCCGCTACGGTGTCGAAAGACCCTGACACCCTGCCTGACCAGGAGGCCATTGCCACAGCGTTACAGAGACTGGCTGACAAACAGGCGACACGACAGTACTCCGCCTCCAGCCACATCCGTCTCCTCACTCAGCACTTAAGCAATCTTAACTTGGCGAGTGGTGCTTTAAGCCGAGGACACTTTGCTCTGAGCCCTGCTGTCCGCCAAGGAGGGCTCTCCTCAGGACCTGATGATGACAGCACATGGGaaggagaaacagaaaatgcatacaGCATGATCACAGGGGTCTCACCACAGCAAAGATACCAGCCTACCACGGGCAGTTACCAGCTTCAGTTTGCAAtacagcagctccagcagcagaAACTACAGTCCCGTCAACTGCTGGACCACAGTCGGGCGCGCCAT

Function

symbol description
ttll5 Predicted to enable tubulin binding activity and tubulin-glutamic acid ligase activity. Predicted to be involved in microtubule cytoskeleton organization and protein polyglutamylation. Predicted to act upstream of or within cellular protein modification process. Predicted to be active in cilium. Human ortholog(s) of this gene implicated in cone-rod dystrophy 19. Orthologous to human TTLL5 (tubulin tyrosine ligase like 5).

NR:

description
PREDICTED: tubulin polyglutamylase TTLL5 isoform X3

GO: NA

KEGG:

id description
K16602 TTLL5, TTLL10; tubulin polyglutamylase TTLL5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000458 True 3255 mRNA 0.52 26 15141396 15180517

Neighbor

gene id symbol gene type direction distance location
AMCG00000459 ift43,LOC106590872 coding downstream 32945 15092142 ~ 15108451 (-)
AMCG00000442 NA coding downstream 76025 15042140 ~ 15065371 (-)
AMCG00000446 esrrb coding downstream 164974 14954668 ~ 14976422 (-)
AMCG00000445 esrrb coding downstream 198217 14939745 ~ 14943179 (-)
AMCG00000444 vash1,LOC106589786 coding downstream 250866 14881250 ~ 14890530 (-)
AMCG00000466 flvcr2,LOC108242486 coding upstream 6682 15187199 ~ 15211871 (-)
AMCG00000463 atf3,jdp2,LOC106611045 coding upstream 49771 15230288 ~ 15242153 (-)
AMCG00000467 NA coding upstream 72775 15253292 ~ 15255829 (-)
AMCG00000465 NA coding upstream 98972 15279489 ~ 15288455 (-)
AMCG00000476 NA coding upstream 117360 15297877 ~ 15309522 (-)
G150427 NA non-coding downstream 249690 14890534 ~ 14891706 (-)
G150306 NA non-coding downstream 645736 14495459 ~ 14495660 (-)
G150219 NA non-coding downstream 987550 14151588 ~ 14153846 (-)
G150119 arf6,arf6a,ARF6,arf6.2,LOC106608083,LOC105893149,LOC104956700 non-coding downstream 1379799 13756516 ~ 13761597 (-)
G150115 NA non-coding downstream 1395266 13739796 ~ 13746130 (-)
G150476 NA non-coding upstream 48380 15228897 ~ 15229292 (-)
G150485 NA non-coding upstream 70108 15250625 ~ 15250829 (-)
G150502 NA non-coding upstream 80870 15261387 ~ 15263576 (-)
G150504 NA non-coding upstream 90879 15271396 ~ 15273123 (-)
G150497 NA non-coding upstream 95446 15275963 ~ 15278056 (-)
AMCG00000457 NA other downstream 3473 15124025 ~ 15137923 (-)
AMCG00000436 NA other downstream 568964 14569962 ~ 14572432 (-)
AMCG00000425 entpd5,LOC107586906,LOC105908609,LOC106571572,LOC106608092 other downstream 880064 14245817 ~ 14261332 (-)
AMCG00000409 exoc5 other downstream 1112469 14003076 ~ 14028927 (-)
G150138 NA other downstream 1314687 13823954 ~ 13826709 (-)
AMCG00000464 batf other upstream 32885 15213402 ~ 15222743 (-)
AMCG00000475 NA other upstream 108786 15289303 ~ 15291255 (-)
AMCG00000482 NA other upstream 281329 15461846 ~ 15479049 (-)
AMCG00000469 LOC108413331,LOC107549545,LOC107582175,LOC108269530,LOC108423442 other upstream 317655 15498172 ~ 15527390 (-)
G150729 NA other upstream 1624678 16805195 ~ 16834326 (-)

Expression


Co-expression Network