AMCG00000459 (ift43,LOC106590872)


Basic Information

Item Value
gene id AMCG00000459
gene name ift43,LOC106590872
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 15092142 ~ 15108451 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000459
GGAGGGTGTGTCGCCATGGTGACGGTTACTGCGGGACGCGCTCTCGTATCCAGGAAGTGGAGGAGATCCAAGATGGAGGACGGGCTGGAGCTGGGGGACGGCGGCGTGAGGAAAAGTGCAGTGAAATCGGGCCGAAGAGCAAGGCAGGTGGCGGAGCCCATGCCCGAGGAGTCTCGCCACGTGAGAAAAACCTCCTCTTCGACGTCCATGGGCGAGGGACCTCCACCAAAACCTCCTCGGCGACAGGGAGGCTGGGCAGACGAGACCCCAGGCTCTGCCAAATCTGGAAGACGACCAGCAACGGAAGAGATGGAAGATAGACGCTTGAGACCACAAACCCCGGAGCGCTCGGATGATGAAGGAGATATCCCCGTGATCCCCGACCTTGAAGAGGTGCAGGAGGAGGACCTCACGATGCAGGTGGCAGCTCCACCCAGCATCCAGGTCAACAGAGTGATGACCTATAGAGACTTAGACAATGATCTTATGAAATACTCAGCATTTCAGACTCTGGATGGAGAGATCAACTTAAAATTACTCACAAAGGTATTGGCCCCCGAGCAGGAAGAGGATGTTGGCTGGGACTGGGATCATTTATTCACTGAGGTTTCCTCTGAGCTGATGACTGAATGGGATCAAGGAGACAAAGAGGACCCAAAACAACCACCTTTAGTTACCTGACAGTGGAGATGTGAAAAGGTTGAGCTCTCTGTTCTTAAAATAATGCTGGCTGACCATTTTATTTGGCCTATATAATAAGTGCCAGTATTGCAAGTTTAATCATGATTCCTTCACATCTTTTCCTGACACATTACAGCTTCACTAgcactattattttaatacatttatcctGCATTGACACTATTTTACggtttactgtatattaatagaatatattataACCTggtattaaatgttatttttctaaataaacttaaaaaaacataaatgaa

Function

symbol description
ift43 Involved in cilium assembly and intraciliary retrograde transport. Located in centriolar satellite and cilium. Part of intraciliary transport particle A. Implicated in cranioectodermal dysplasia 3; retinitis pigmentosa 81; and short-rib thoracic dysplasia 18 with polydactyly.

NR:

description
PREDICTED: intraflagellar transport protein 43 homolog isoform X2

GO:

id name namespace
GO:0060271 cilium assembly biological_process
GO:0035721 intraciliary retrograde transport biological_process

KEGG:

id description
K19675 IFT43; intraflagellar transport protein 43

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000459 True 953 mRNA 0.48 9 15092142 15108451

Neighbor

gene id symbol gene type direction distance location
AMCG00000442 NA coding downstream 26771 15042140 ~ 15065371 (-)
AMCG00000446 esrrb coding downstream 115720 14954668 ~ 14976422 (-)
AMCG00000445 esrrb coding downstream 148963 14939745 ~ 14943179 (-)
AMCG00000444 vash1,LOC106589786 coding downstream 201612 14881250 ~ 14890530 (-)
AMCG00000453 NA coding downstream 223485 14862756 ~ 14868657 (-)
AMCG00000458 ttll5 coding upstream 32945 15141396 ~ 15180517 (-)
AMCG00000466 flvcr2,LOC108242486 coding upstream 78748 15187199 ~ 15211871 (-)
AMCG00000463 atf3,jdp2,LOC106611045 coding upstream 121837 15230288 ~ 15242153 (-)
AMCG00000467 NA coding upstream 144841 15253292 ~ 15255829 (-)
AMCG00000465 NA coding upstream 171038 15279489 ~ 15288455 (-)
G150427 NA non-coding downstream 200436 14890534 ~ 14891706 (-)
G150306 NA non-coding downstream 596482 14495459 ~ 14495660 (-)
G150219 NA non-coding downstream 938296 14151588 ~ 14153846 (-)
G150119 arf6,arf6a,ARF6,arf6.2,LOC106608083,LOC105893149,LOC104956700 non-coding downstream 1330545 13756516 ~ 13761597 (-)
G150115 NA non-coding downstream 1346012 13739796 ~ 13746130 (-)
G150476 NA non-coding upstream 120446 15228897 ~ 15229292 (-)
G150485 NA non-coding upstream 142174 15250625 ~ 15250829 (-)
G150502 NA non-coding upstream 152936 15261387 ~ 15263576 (-)
G150504 NA non-coding upstream 162945 15271396 ~ 15273123 (-)
G150497 NA non-coding upstream 167512 15275963 ~ 15278056 (-)
AMCG00000436 NA other downstream 519710 14569962 ~ 14572432 (-)
AMCG00000425 entpd5,LOC107586906,LOC105908609,LOC106571572,LOC106608092 other downstream 830810 14245817 ~ 14261332 (-)
AMCG00000409 exoc5 other downstream 1063215 14003076 ~ 14028927 (-)
G150138 NA other downstream 1265433 13823954 ~ 13826709 (-)
G149847 NA other downstream 2549832 12522520 ~ 12542310 (-)
AMCG00000457 NA other upstream 15574 15124025 ~ 15137923 (-)
AMCG00000464 batf other upstream 104951 15213402 ~ 15222743 (-)
AMCG00000475 NA other upstream 180852 15289303 ~ 15291255 (-)
AMCG00000482 NA other upstream 353395 15461846 ~ 15479049 (-)
AMCG00000469 LOC108413331,LOC107549545,LOC107582175,LOC108269530,LOC108423442 other upstream 389721 15498172 ~ 15527390 (-)

Expression


Co-expression Network