AMCG00000463 (atf3,jdp2,LOC106611045)


Basic Information

Item Value
gene id AMCG00000463
gene name atf3,jdp2,LOC106611045
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 15230288 ~ 15242153 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000463
CTGACCTGAAAAACGAATTTCTATCGGATTTAAGACCAAAGGCAGCTTTTTCTCAGCTGTGGAGAGTTTAGTCCGGCATCTCATTTCCAGCTATGCGTGTAACATCTAACCTGCTGCCTCCCAGAAAACTGTATATTGAGCCTCCACATGACTTATGGAACAGCAACTATGAACAGTAGCTGTGGTTGTAGCTGGGCCTGACATGATGCCTGGACAGATACCAGACCCCTCGCTGACGGCAGGTTCTCTCCCCAGTCTCGGGCCGCTGGCCGGCATCCCGTCCACCACTCTGACCACCGAGGAGCTGAAGTACGCCGACATCCGCAACATCGGGGCCATGCTCTCGCCGCTGCACTTCCTGGGGGTCAAACTGGGGAAGAGGCCGTCAGCATTAAAGGGAGAGATGGATGAGGAAGaagagaggaggaaaagaaggcgagagaaaaacaaagtggCGGCAGCACGATGtcgaaataaaaagaaagagcgCACCGAGTTTCTACAAAGGGAGTCGGAGCGGCTGGAGGTGATGAACGCCGAGCTGAAGGCGCAGATCGAGGAGCTGAAACACGAGCGGCAGCAACTCATCGTCATGCTGAACCGACACCGGCCCACCTGCATCGTCAGGACGGACAGCGTGAAGACCCCCGACAGCGAGGCCAACCCCCTGCTGGAGCAGCTGGCTGCCAAGTGAAGGCTGGGCCTGCAGGCTGGATGGGCTGCTCCCCGCCCTGGACTTTGTAGCGCAGCTAGAGTCAGCAGCACTTAGATCTTCACGGAGGAATTTGAAGGAAGCCGAGATCTCCCGTCGAGTCCTTTAGAAAAGGGTAGCTCCGTGAGGCGGTGATGTGGCAGTgctttttctatgttttttttattcattttgatttttgCTCTTCACTGCCACAAAGTTACTGCTGCCATCACTACagacaaaaagaagaaacactCTAAAACAATGTAGATCTGTTCTGGTCTCAGGTACTCAGacagagtttgtttgtttgtttgttttgccaatGTATACTGGTTAAATAAACAgttatagtattttatattattgtttatatccTGCCCTTGACTATGGCAGTCTCCGGTTGAACCGATTAAGGTGACGCAGGCGTCATTAaagcacatatatatgtattgtttacagTCTTGCTGTTACATCATTGTTACTTCcaattttacattgtattttttatgagttTTTTATACtgcaatgtgtatatatatataaatattataaaaatatatatgatatgtaATCACTAGATgtgatgcattttacatttctgttacaAACAGATATACCTTTTTTTATTctgatgtgttgtgtgttttcaatgtgcttttttttctcctcttttgtTCGTTTTATTTACTGAGAGGGAGTCTGGAAAACCTCCTTTCCCAGCTCAATGTCTTCCCCATGGCCATTTGTaacttttcaaacatttatGTCTTTGTTACTCTGTTCTATACTaattaaatcttatttttaaaaata

Function

symbol description
atf3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within response to virus. Predicted to be active in nucleus. Is expressed in brain; eye; and retina. Orthologous to human ATF3 (activating transcription factor 3).
jdp2 Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and sequence-specific double-stranded DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II. Predicted to be part of chromatin. Predicted to be active in nucleus.

NR:

description
PREDICTED: jun dimerization protein 2-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09033 JDP2; jun dimerization protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000463 True 1510 mRNA 0.45 5 15230288 15242153

Neighbor

gene id symbol gene type direction distance location
AMCG00000466 flvcr2,LOC108242486 coding downstream 18417 15187199 ~ 15211871 (-)
AMCG00000458 ttll5 coding downstream 49771 15141396 ~ 15180517 (-)
AMCG00000459 ift43,LOC106590872 coding downstream 121837 15092142 ~ 15108451 (-)
AMCG00000442 NA coding downstream 164917 15042140 ~ 15065371 (-)
AMCG00000446 esrrb coding downstream 253866 14954668 ~ 14976422 (-)
AMCG00000467 NA coding upstream 11139 15253292 ~ 15255829 (-)
AMCG00000465 NA coding upstream 37336 15279489 ~ 15288455 (-)
AMCG00000476 NA coding upstream 55724 15297877 ~ 15309522 (-)
AMCG00000477 ttc8,LOC106611037,LOC106591546 coding upstream 68848 15311001 ~ 15320215 (-)
AMCG00000480 NA coding upstream 141504 15383657 ~ 15390950 (-)
G150476 NA non-coding downstream 996 15228897 ~ 15229292 (-)
G150427 NA non-coding downstream 338582 14890534 ~ 14891706 (-)
G150306 NA non-coding downstream 734628 14495459 ~ 14495660 (-)
G150219 NA non-coding downstream 1076442 14151588 ~ 14153846 (-)
G150119 arf6,arf6a,ARF6,arf6.2,LOC106608083,LOC105893149,LOC104956700 non-coding downstream 1468691 13756516 ~ 13761597 (-)
G150485 NA non-coding upstream 8472 15250625 ~ 15250829 (-)
G150502 NA non-coding upstream 19234 15261387 ~ 15263576 (-)
G150504 NA non-coding upstream 29243 15271396 ~ 15273123 (-)
G150497 NA non-coding upstream 33810 15275963 ~ 15278056 (-)
G150514 NA non-coding upstream 52066 15294219 ~ 15295205 (-)
AMCG00000464 batf other downstream 7545 15213402 ~ 15222743 (-)
AMCG00000457 NA other downstream 92365 15124025 ~ 15137923 (-)
AMCG00000436 NA other downstream 657856 14569962 ~ 14572432 (-)
AMCG00000425 entpd5,LOC107586906,LOC105908609,LOC106571572,LOC106608092 other downstream 968956 14245817 ~ 14261332 (-)
AMCG00000409 exoc5 other downstream 1201361 14003076 ~ 14028927 (-)
AMCG00000475 NA other upstream 47150 15289303 ~ 15291255 (-)
AMCG00000482 NA other upstream 219693 15461846 ~ 15479049 (-)
AMCG00000469 LOC108413331,LOC107549545,LOC107582175,LOC108269530,LOC108423442 other upstream 256019 15498172 ~ 15527390 (-)
G150729 NA other upstream 1563042 16805195 ~ 16834326 (-)
AMCG00000518 NA other upstream 1591606 16833759 ~ 16836603 (-)

Expression


Co-expression Network