AMCG00000464 (batf)


Basic Information

Item Value
gene id AMCG00000464
gene name batf
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 15213402 ~ 15222743 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000464
CAGTatacagagatagagagagacagaaagcaGAAGTGGAGAGACCTGTGGCTTTACTGAGACGCAGTTTGCTATGGCACAGGGTTCTGACAGTAACGACACAAGTTTTACCAGATCTCCATCTCCGGGCAGTAAGCagGATTCCTCAGATGATGTGAAAAAGGtcatgaggagagagaagaacCGCATTGCAGCTCAGAAGAGCAGGATGAGACAGACGCAGAAAGCAGACACCCTGCATCTGGAGAGTGAGAATCTGGAGAAGGAGAATGCTGCCCTGAGGAAGGAGGTCCAGAGACTGACCGAAGAGGCCAAGCATCTGTCCACCGTGCTGAGCAACCACGAGCCCTTCTGCTCGGCACCGTTGAGCTCCCAGACCTCTGACATCCTCTACTCCCCCCACGGGGCCTTCCACCAGGCGCACATCACCTCGCCGCGCTTCCAGCACTGACCACCCGGGGGAGCTGACATGTTATCTCATTGTAGAGTTGGACAGGCAGAGAGGTTTGTGTTCGGGAGGAGTATACACTGGCATGCTCAATCTAACAGGCACAAACTGTCTTACTATCCACTATCCTACCCCCTTTGCTTAAGAGAACCAGATTAACTAGATAACGTTGATTTAGCCTCTGAGCTCACTTAGGgattgaaacaaacaagcagatgATCGCTAACTTCATTTTTACATTCCTGTGTGCAAATCTAATTATGCAAGTGAGCCTTGGCTTTGGGCCCCAGGCTGGAGATACACACTGTCAGCTCGTgtttgtgaaaaagaaaaagaaaagagcttGATAAAATGAAATACCTTCTTGGTGGTTTATACTTGAGATTAAGCAGGTTGGTAAATTTAACTACGGGTAAAAAAAtatcttttgtgtattttgcatacattatttttgttatatttctctTTGCCCAGACAACACGTTCCTGTAGAAATCATATTTTAGACACATTCTGCAATCCTGCAAGGAAGGACTCCACGTGCAAATGAAAAATTCCACAAAGGAATGCATCATGTTTTGGGAATTTGTCTGGAATCAATCAGGATTTTTACTATTGTCATGACAAAAGGTCTATAACACTTGACCCTGTAGAAGTATTTAACTGCTTATGATTGTATGAGCACTGTTGAGAAAAACACACCTacaaacattatattaaattaatataaattatattgaaataagaaaaatgaatgtatttaaaaataaaaccaggctGACTGATTTTATCTGAGGTGCGGGCGAACTATGTTTCCTGTAACGaatgtgtactgtactgtaatctGGTGAGTTTGTATCTTTCAGATATGTCTTAGGTGTATTTTCATGGAGGTCATTATAATCTCTAGATAGATTTGTGGATCTTTACtttgaatgtgttatttatatagaTGGTGTCAATACTGGTAAAGTTGTAcaattgttaatattttgttgGAAATAGTCATCTGTTTATATTCCTTCCACttgaatgtatattgtttatttttgtgtgataTACACTGCCCCCTGGTGTTTCAATAAGAAAGTAATCCCTTAAAAAGTGCAGataatgtaaagaaatatattttgataaaacaTTATAGGATTCATGCTTGTATGTATATAGAATATAGAGCATAAACACTGTCAAAGACAGTTCATGAAAGACATTTTCTAATTGTTGCATTCATCATAAAAGAATGTTTAATagacattgttttcatttaattgaaacaaattgCATCAAATCATTCAATTTTTGAATACAACAGTTCATTGTAACCTATGCTGAAACATGATCTTTTGTGTAGATGTCTACCTCTCCTCCACTTATTTTAGGGGGAAAGGGAATGCTCATTTACATTATTACCTTTTCAGAGTGAATCCACtttcaaacacataaaaaatgcTCTGAATTTATGAAAAGATGCATTTTGGGAATGGCAAACCGCAAATGTGTCCACACACTGATAACTAACCATGTGACGTTTCAGTGTTATCTCTTCTAACGCAGCAACTGGAAGACACCCGATGATCCCAGTGACCAGCAGTCACTCGTTGACTGAACTCAGGGCCTGTTTGAGAGATCACTGTCGATTGTGGTTAGTTGTACTTACTGTAGTTCCTCGAATTGGTAGTGCTAAGTGTATTGCTTTTGCATTGAATTCAAAGGCCTTGAATGTAGTATTTATTCAGATGTATATCTACACTTTAATGACACGtttttttatgatatatatgtacatactaGTCTTTTCATTGACTAAAACAATAGGTTTTGGTTTTATAGGTACATTTATCAGGTCATTAAGACAATcaatagaaaatgaaataaaggcTACAGTCTATAAATGCACACCAGAGGTCACTGTATACCTGTGCAAGCAAGCAGTGATGTGTTACAACCTATTCCGTTATGAATATCCAGTACAGTATTTTTATGGTATTTACTCTACAGAAAGCTAAGAATTTTTGTACTTTGCCTTTTCTTATGGAATTTGTGATAAATTGTATGTTGTTGCCCCTTATGCAATTGTAgcttgttgtttaaaaaaataaagttgtttttttaaataa
>TU189371
gagagagagagagagagagagagagagagaggggagggagagagagagagagagagagagagagtcttaTTCATTAAGTAAAAGAGGCAAGAATAGTTCAGTatacagagatagagagagacagaaagcaGAAGTGGAGAGACCTGTGGCTTTACTGAGACGCAGTTTGCTATGGCACAGGGTTCTGACAGTAACGACACAAGTTTTACCAGATCTCCATCTCCGGGCAGTAAGCagGATTCCTCAGATGATGTGAAAAAGGtcatgaggagagagaagaacCGCATTGCAGCTCAGAAGAGCAGGATGAGACAGACGCAGAAAGCAGACACCCTGCATCTGGAGAGTGAGAATCTGGAGAAGGAGAATGCTGCCCTGAGGAAGGAGGTCCAGAGACTGACCGAAGAGGCCAAGCATCTGTCCACCGTGCTGAGCAACCACGAGCCCTTCTGCTCGGCACCGTTGAGCTCCCAGACCTCTGACATCCTCTACTCCCCCCACGGGGCCTTCCACCAGGCGCACATCACCTCGCCGCGCTTCCAGCACTGACCACCCGGGGGAGCTGACATGTTATCTCATTGTAGAGTTGGACAGGCAGAGAGGTTTGTGTTCGGGAGGAGTATACACTGGCATGCTCAATCTAACAGGCACAAACTGTCTTACTATCCACTATCCTACCCCCTTTGCTTAAGAGAACCAGATTAACTAGATAACGTTGATTTAGCCTCTGAGCTCACTTAGGgattgaaacaaacaagcagatgATCGCTAACTTCATTTTTACATTCCTGTGTGCAAATCTAATTATGCAAGTGAGCCTTGGCTTTGGGCCCCAGGCTGGAGATACACACTGTCAGCTCGTgtttgtgaaaaagaaaaagaaaagagcttGATAAAATGAAATACCTTCTTGGTGGTTTATACTTGAGATTAAGCAGGTTGGTAAATTTAACTACGGGTAAAAAAAtatcttttgtgtattttgcatacattatttttgttatatttctctTTGCCCAGACAACACGTTCCTGTAGAAATCATATTTTAGACACATTCTGCAATCCTGCAAGGAAGGACTCCACGTGCAAATGAAAAATTCCACAAAGGAATGCATCATGTTTTGGGAATTTGTCTGGAATCAATCAGGATTTTTACTATTGTCATGACAAAAGGTCTATAACACTTGACCCTGTAGAAGTATTTAACTGCTTATGATTGTATGAGCACTGTTGAGAAAAACACACCTacaaacattatattaaattaatataaattatattgaaataagaaaaatgaatgtatttaaaaataaaaccaggctGACTGATTTTATCTGAGGTGCGGGCGAACTATGTTTCCTGTAACGaatgtgtactgtactgtaatctGGTGAGTTTGTATCTTTCAGATATGTCTTAGGTGTATTTTCATGGAGGTCATTATAATCTCTAGATAGATTTGTGGATCTTTACtttgaatgtgttatttatatagaTGGTGTCAATACTGGTAAAGTTGTAcaattgttaatattttgttgGAAATAGTCATCTGTTTATATTCCTTCCACttgaatgtatattgtttatttttgtgtgataTACACTGCCCCCTGGTGTTTCAATAAGAAAGTAATCCCTTAAAAAGTGCAGataatgtaaagaaatatattttgataaaacaTTATAGGATTCATGCTTGTATGTATATAGAATATAGAGCATAAACACTGTCAAAGACAGTTCATGAAAGACATTTTCTAATTGTTGCATTCATCATAAAAGAATGTTTAATagacattgttttcatttaattgaaacaaattgCATCAAATCATTCAATTTTTGAATACAACAGTTCATTGTAACCTATGCTGAAACATGATCTTTTGTGTAGATGTCTACCTCTCCTCCACTTATTTTAGGGGGAAAGGGAATGCTCATTTACATTATTACCTTTTCAGAGTGAATCCACtttcaaacacataaaaaatgcTCTGAATTTATGAAAAGATGCATTTTGGGAATGGCAAACCGCAAATGTGTCCACACACTGATAACTAACCATGTGACGTTTCAGTGTTATCTCTTCTAACGCAGCAACTGGAAGACACCCGATGATCCCAGTGACCAGCAGTCACTCGTTGACTGAACTCAGGGCCTGTTTGAGAGATCACTGTCGATTGTGGTTAGTTGTACTTACTGTAGTTCCTCGAATTGGTAGTGCTAAGTGTATTGCTTTTGCATTGAATTCAAAGGCCTTGAATGTAGTATTTATTCAGATGTATATCTACACTTTAATGACACGtttttttatgatatatatgtacatactaGTCTTTTCATTGACTAAAACAATAGGTTTTGGTTTTATAGGTACATTTATCAGGTCATTAAGACAATcaatagaaaatgaaataaaggcTACAGTCTATAAATGCACACCAGAGGTCACTGTATACCTGTGCAAGCAAGCAGTGATGTGTTACAACCTATTCCGTTATGAATATCCAGTACAGTATTTTTATGGTATTTACTCTACAGAAAGCTAAGAATTTTTGTACTTTGCCTTTTCTTATGGAATTTGTGATAAATTGTATGTTGTTGCCCCTTATGCAATTGTAgcttgttgtttaaaaaaataaagttgt

Function

symbol description
batf Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including defense response to protozoan; immune system development; and regulation of gene expression. Predicted to act upstream of or within cell differentiation and regulation of transcription, DNA-templated. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human BATF (basic leucine zipper ATF-like transcription factor).

NR:

description
PREDICTED: basic leucine zipper transcriptional factor ATF-like isoform X2

GO:

id name namespace
GO:0045064 T-helper 2 cell differentiation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043011 myeloid dendritic cell differentiation biological_process
GO:0002320 lymphoid progenitor cell differentiation biological_process
GO:0001816 cytokine production biological_process
GO:0045190 isotype switching biological_process
GO:0042832 defense response to protozoan biological_process
GO:0060218 hematopoietic stem cell differentiation biological_process
GO:0072540 T-helper 17 cell lineage commitment biological_process
GO:0030330 DNA damage response, signal transduction by p53 class mediator biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000464 False 2567 mRNA 0.38 3 15213402 15222645
TU189371 True 2653 TUCP 0.38 3 15213414 15222743

Neighbor

gene id symbol gene type direction distance location
AMCG00000466 flvcr2,LOC108242486 coding downstream 1531 15187199 ~ 15211871 (-)
AMCG00000458 ttll5 coding downstream 32885 15141396 ~ 15180517 (-)
AMCG00000459 ift43,LOC106590872 coding downstream 104951 15092142 ~ 15108451 (-)
AMCG00000442 NA coding downstream 148031 15042140 ~ 15065371 (-)
AMCG00000446 esrrb coding downstream 236980 14954668 ~ 14976422 (-)
AMCG00000463 atf3,jdp2,LOC106611045 coding upstream 7545 15230288 ~ 15242153 (-)
AMCG00000467 NA coding upstream 30549 15253292 ~ 15255829 (-)
AMCG00000465 NA coding upstream 56746 15279489 ~ 15288455 (-)
AMCG00000476 NA coding upstream 75134 15297877 ~ 15309522 (-)
AMCG00000477 ttc8,LOC106611037,LOC106591546 coding upstream 88258 15311001 ~ 15320215 (-)
G150427 NA non-coding downstream 321696 14890534 ~ 14891706 (-)
G150306 NA non-coding downstream 717742 14495459 ~ 14495660 (-)
G150219 NA non-coding downstream 1059556 14151588 ~ 14153846 (-)
G150119 arf6,arf6a,ARF6,arf6.2,LOC106608083,LOC105893149,LOC104956700 non-coding downstream 1451805 13756516 ~ 13761597 (-)
G150115 NA non-coding downstream 1467272 13739796 ~ 13746130 (-)
G150476 NA non-coding upstream 6154 15228897 ~ 15229292 (-)
G150485 NA non-coding upstream 27882 15250625 ~ 15250829 (-)
G150502 NA non-coding upstream 38644 15261387 ~ 15263576 (-)
G150504 NA non-coding upstream 48653 15271396 ~ 15273123 (-)
G150497 NA non-coding upstream 53220 15275963 ~ 15278056 (-)
AMCG00000457 NA other downstream 75479 15124025 ~ 15137923 (-)
AMCG00000436 NA other downstream 640970 14569962 ~ 14572432 (-)
AMCG00000425 entpd5,LOC107586906,LOC105908609,LOC106571572,LOC106608092 other downstream 952070 14245817 ~ 14261332 (-)
AMCG00000409 exoc5 other downstream 1184475 14003076 ~ 14028927 (-)
G150138 NA other downstream 1386693 13823954 ~ 13826709 (-)
AMCG00000475 NA other upstream 66560 15289303 ~ 15291255 (-)
AMCG00000482 NA other upstream 239103 15461846 ~ 15479049 (-)
AMCG00000469 LOC108413331,LOC107549545,LOC107582175,LOC108269530,LOC108423442 other upstream 275429 15498172 ~ 15527390 (-)
G150729 NA other upstream 1582452 16805195 ~ 16834326 (-)
AMCG00000518 NA other upstream 1611016 16833759 ~ 16836603 (-)

Expression


Co-expression Network