AMCG00000465



Basic Information


Item Value
gene id AMCG00000465
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 15279489 ~ 15288455 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00000465
ATGATTAAGTGCCTATCACGGGAAGTGCAAGCCAGGCTCCGCTCTGGGATAGCCATCTTCTCATTGACGCAGTGTGTGGAAGAGCTGCTCCTGAACAGCATTGATGCTGGGGCAACGTGCGTGGCTGTGAGGGTGGACATTGAGACGTGCAAAGTGCAGGTGATAGACAATGGCTCCGGTATGGACAGGGAGAACATGGAGCGCGTGGGAAATAGGTACTTCACCAGCAAGTGTGGTTCTCTGGAAGACCTGGACAATCTCAGGTTTCACGGCTTCAGAGGGGAGGCTATTGCCAGCATCGCCGGTTTAGCCACACTGGTGGAAATTTCCTCCAGAACCCATCAGTCGGTCCAAACCTTCGTGAAAGTTTTTAAGGACGGAAAGGGCTTGGATGTGTACGAAGCGGATCTTGCCAGACCGGCAGCGGGCACAACAGTTGTGATCTGCAACTTTTTTCACAACCTGCCAGTGAGGAGGAAAAGACTGGATCCGGTTTTGGAGTGTGAGCGGATCAGGCAGAGGATTGAAGGCATCTCTCTCATGCACCCGTCCGTCTCGTTCTCGCTGAGGAATGACACCACTGGAACCATGGTGGTCCAGCTCTCCAAGACCAGGAACACGTATTTCAGGTTCACACAGATTTACGGTTTGGGGAAAGCTCAGAAGCTTGGAGAGATCACCTGCTCCCATAATCAGTTTGAAATGAGTGGCTTTATAGGCCGTGAGGGCCACTACAACAGTAGCATGCAGTTTCTCTTTGTAAATAAAAGACTACTTTTAAAAACCCGAATTCATAAACTCTTACATTTTCTACTGAAGAAGGTGAGTGTGGCCAACAGGCAGAATGGCAGCCCAACTGTGTCCACTGCTCTTGGGAGTCCAAAGCAGAGGAGTGGCTCAGAGCTTCAGGGGGTCTATGTGATTAATATTAAGTGCCACTATTCAGAGTATGATGTGTGCATGGAGCCAGCAAAAACCCTCATTGAGTTTAGAGACTGGGACAGTGTATTGTTCTGCGTGGAGGAAGGAGTCAAGAAGTTTCTGACCAGGGAGAACTTGGTGGCAGAGCTTTCTCCCGAGGACGTCCATGAGTTTGTCTATGAGAATGCCTTGAATGACCAGTTAGCTTGCATTGATAGTACACAGGGAGGCACTGCAATTGGGGATCCTAAAAGTGTGCTTGACTTTCCGAGGCAAACTCCCGAATGGAAGACTCTGACGTCTAAAACTGTGCACAGATCATTGGCGATAGGTTTTAATGTGACGGAAAGTATGTGCATGGCCAGCGAGGAGGCTGAAATTGTAAAGggacaagaggaaaaaaagaacagtGACCTTGAATCTGTGTATCACGCACTAAAGGAAAAGACACTCGCTCCCAGTGAGACCAAGACTGACGAAACCACTTCTTCTCACGTACCTAGCTCACACAGCTCACAGATTAAAGCCAGTGAAAATCGGCATAGCTCTGCCCCAGATACAGTTAACGCTGTGTCAAAAAACACAGTATTTTATGAATCGTTCAATGACAGTGACTGTATTGACATAAGCAATGCAACAACACAACTGGAAGATGCTGCCTGGAGGACTAGCTCAGATGAAGATACAGTGAAACCCAGTGCAAATACAAATCTGGGAAAAGAGTGTGGACATGGGAGAGACCCTGAAAGAAGTATAGAAAGTGTTGCTTCCTCTcacttttctcattttaaaacacgTAGCACATTTAGTAACGTAATGCCATTTAGCAGTAGTAACCTAGAACTAAGAACTGAAGACCAAACAAACGTTTCAGGAACAACAAAGGTGCAGCTAGCTTCTACAGGCTTCATAAAACATGTGATACTTAAGCCGCATACCAATGAAAAGAAGAGTGAAGTCCAAGAGGGGTTAAGAAGATTCTGTCTCCAGGGACCTGCGAGTGCCCAGGATATCTTCAAACATTCATCTCCAGCAAAGGAGCCCATTCAAACTGAAGCTAAAGAGCACACGAGAGATTCATCTATAGAGTCATTGCAGCAACCAGACACTACATTAACTGTTTCAGCAGATAATACGACATCTTTAGAAGCACCAAAGAGAAAGATATCTTTGGTGGGGGCCCGCGGGACTGCTAGTGGGGGCTACAGCAGTTATAAGGACTTGGTTGAGAGGGTTACCCGGCCTGGTCCTAAACTGTCCTTGTCAGGGACAGCTGAATCTTTAGACAGATTCCGAAGGATTTATGGAAAGCAGAACTTGTCAGGAAAAGAACCCACGCCACAAGATGACAACAACAATCAAAATGCTCCAGATGCCAAAACTGCTCAAGAAGTTTCCGTCAATCCAGAGAACCATGAAATAAATGACAGTGTAGGCTCTGCCCAGCTAAATGACAGCCCTCTTACTCTTTCGGAGTTTACCAGAATGAAACCGATGTCAGCACAAAGCAGTAGCAAGGCCAAAGGATCTCTTGCTACAAAGCTTTCGAAGTTAAAGGGCTATCAGAGGGAGAATGGCTGCAGTATATCGAAGGAGCCACCAGCAGGCATTAGCTGTCCAGTTAGTGAGGGCGTACCGGACAATACTCTAGATAGTGGTAGCAATCTTGAAAAATCAATTCATTCTTCACCTAAAACGATCCCAGACATGAATAAAAATCCACAGTTATCTGAGGTAGGAAACTATAACAAAAAAGAGGAATACCCAGGAGGTGCACATCCTGAATTAAACCAGTCaaataaagacatttcaaaagctGCCCAACACTGGTCTCCTCCTGTCAGTACGGGCGCTAGTAAGGTCTGTGATACTCGTCGCTCAGATGACACAGCTATGGGCCAAAGTGAAGAGGTGTCTTTGTGTGAGGTCATAGACAGCCCCAATGAAGTGAGTGAGAGAGCTGGCTGTGACCCTCCCTCTGCTGAGGATAGATCTGGGGGAGCATCACAACAGAGCAACACTCTGTGTCCGGTGTCAAGGGCCTCCGACTGGGTGGAGCGGTTCGATGCATCTGTAGGGAAGATGGTCTACATAAACATGGTGACAGGACTCAGCCGATATGAAGCGCCTCCTGCTGGAGAGACCCGGGTGCCCTGTGTCACAGACATTACGACCATGGCCGTGAACGTGGTCTCCAACAGAGGTGTTACCCATTTCACACGGAGGCAGTGCTCCCCTTCCTGCCCCGGCCGCGGGGGGAGAGGGTTAGCTCAGGGTGGGACTGCGCAGGTTGCGCTGGATGTGAGCAGTGGGCAGGCGGACAGACTGGCTGTGAAGATCCACAACATCCTCTACCCCTACCGCTTCACCAAGGACATGATCCACTCTATGAAGGCAAGCACATGTGCACTAGTAATCCAACAAGTGGACAAGAAGTTCCTGGCCTGCCTTATACACACAAAAGATAAAGAGGGTGCCAACAGTACAGACTCTGAAGAGGGCAATCTGCTGGTGTTGGTGGATCAGCATGCAGCTCATGAGAGAGTCCGTCTGGAGAACCTCATCATAGATTCCTATGAAGCTCAGCCGGGACAGGCCTCAGGGCAGAAAAGGCTGTGCTCCTCCAGTGTGTCCCCGCCCCTGGAGATCGATGTCACTGAAGAGGAGTTCAGGATGCTGCGATCCTGTCAACCGTTCCTGAGGGACCTGGGGCTGGAGATGACGTTTGCAGAGGATGGAGGCCCCAGGGTGCTGGTGGGGAAAGTGCCCGTGTGTTTTTTGGAGAGGGAGGCCAATGAACTGCGGAGAGGGAGACGGACTGTCACCAAAGCCATCGTGGAGttaCTCCACTCGACAGGCCGAGTGCGAGGGACTCTCCCCCTAACGGTGTTAAAGGTTCTTGCTTCTCAAGCCTGCCATGGAGCGATCAAATTCAATGACAGCCTGAGCAGGGAGGAGTGCTGCAGGTTAGTGGAGTCGCTCTCGGCCTGTCAGCTGCCCTTCCAGTGTGCCCACGGCAGACCCTCCATGCTCCCACTGGCTGACCTGGACCACCTCGACACAGAGCCACAGGATCCTCCGAAACCAAACCTCATGAAACTCAGAAGGATAGGCAGCAGAGTGCGTCTTCATGGCAGTGCTGTACGCTACCTGCGGGGACAGCTTGAACATGGGTGCGCACACGATGAGCGGCGTAGAGTGGTGCTTGGCTGCCAGAGCCAGCGTGTGAGTGCCATTGACCGCCCTCAGACCCCCGTTAGCCAGGACCGTCTGTGTGCCGATGATCACCTGCAAAGACGTCACCTGGCAGAAGGGTGCGCACTCGGCGACGATGACGTGGAATTTGCGTTTGCGAGCGGCGTCCTTCAGGAAGGCCTCCACGACTACGGTCGAGCGTCTCTGATCCAGCACCGTACCGAGTTCTGTGAGGAGCTCGTTGATGGCCTCGATCACGTTGGCCTTGAGCGGGGGGAATTGCTGCCTGAAGTTCTCCTCATTCAACCCCCCCGAGGTGAGCAGCTTGTGCAGCGATTCCTGCTGGTCGGCTTCCTCACTGCTGCCCCGGGacctacagacacacaggaacAGACTCTCACGGCTGCCCTATATCCAAAGATGACCCTATAG

Function


GO: NA

KEGG:

id description
K08739 MLH3; DNA mismatch repair protein MLH3

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00000465 True 4548 mRNA 0.51 13 15279489 15288455

Neighbor


gene id symbol gene type direction distance location
AMCG00000467 NA coding downstream 23660 15253292 ~ 15255829 (-)
AMCG00000463 atf3,jdp2,LOC106611045 coding downstream 37336 15230288 ~ 15242153 (-)
AMCG00000466 flvcr2,LOC108242486 coding downstream 67618 15187199 ~ 15211871 (-)
AMCG00000458 ttll5 coding downstream 98972 15141396 ~ 15180517 (-)
AMCG00000459 ift43,LOC106590872 coding downstream 171038 15092142 ~ 15108451 (-)
AMCG00000476 NA coding upstream 9422 15297877 ~ 15309522 (-)
AMCG00000477 ttc8,LOC106611037,LOC106591546 coding upstream 22546 15311001 ~ 15320215 (-)
AMCG00000480 NA coding upstream 95202 15383657 ~ 15390950 (-)
AMCG00000479 ptpn21,LOC106601406,LOC107560165 coding upstream 103414 15391869 ~ 15411274 (-)
AMCG00000481 NA coding upstream 127075 15415530 ~ 15419570 (-)
G150497 NA non-coding downstream 1433 15275963 ~ 15278056 (-)
G150504 NA non-coding downstream 6366 15271396 ~ 15273123 (-)
G150502 NA non-coding downstream 15913 15261387 ~ 15263576 (-)
G150485 NA non-coding downstream 28660 15250625 ~ 15250829 (-)
G150476 NA non-coding downstream 50197 15228897 ~ 15229292 (-)
G150514 NA non-coding upstream 5764 15294219 ~ 15295205 (-)
G150581 NA non-coding upstream 278304 15566759 ~ 15568750 (-)
G150586 NA non-coding upstream 290434 15578889 ~ 15580921 (-)
G150588 NA non-coding upstream 330766 15619221 ~ 15619788 (-)
G150626 NA non-coding upstream 468398 15756853 ~ 15758160 (-)
AMCG00000464 batf other downstream 56746 15213402 ~ 15222743 (-)
AMCG00000457 NA other downstream 141566 15124025 ~ 15137923 (-)
AMCG00000436 NA other downstream 707057 14569962 ~ 14572432 (-)
AMCG00000425 entpd5,LOC107586906,LOC105908609,LOC106571572,LOC106608092 other downstream 1018157 14245817 ~ 14261332 (-)
AMCG00000409 exoc5 other downstream 1250562 14003076 ~ 14028927 (-)
AMCG00000475 NA other upstream 848 15289303 ~ 15291255 (-)
AMCG00000482 NA other upstream 173391 15461846 ~ 15479049 (-)
AMCG00000469 LOC108413331,LOC107549545,LOC107582175,LOC108269530,LOC108423442 other upstream 209717 15498172 ~ 15527390 (-)
G150729 NA other upstream 1516740 16805195 ~ 16834326 (-)
AMCG00000518 NA other upstream 1545304 16833759 ~ 16836603 (-)

Expression



Co-expression Network