AMCG00000469 (LOC108413331,LOC107549545,LOC107582175,LOC108269530,LOC108423442)


Basic Information

Item Value
gene id AMCG00000469
gene name LOC108413331,LOC107549545,LOC107582175,LOC108269530,LOC108423442
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 15498172 ~ 15527390 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000469
ATGGCCATGGACATGGACATGGGAGATGGCACAGACAAGTGTATAACAGTGAATATCCCTGTCATGGGAGGAGCCTTCATGGACTCACCCAATGATGATTACAGCGCAGATCACTCTTTGTTCAACTCCTCGGCAAGTGTCCACGCTGCTGCGATTACGGCCCAGAATCAACAGGAAGAGGCGCACTCAGTCTCCAGTGATGCAATCTGGCTTTGGATTGCCATTATTGCTACAATTGGAAATATTGTGGTTGTAGGGGTTGTCTATGCCTTCACCTTCTGA
>TU189486
CGTCAACCGACAGATATCCAGAAGACACACGCATATGCATaGCACTGCCTTAAAACACTACCCAGCGGTGCAAGGCATGCATACGAGCTGGAGCCGAGATGCGATTTTAAAGGTGTAGGAAGAAATCGGGTGCTCTATGTGGGAATAAGACGTCTAGTTCCCGGTGTCTAATTTATTCTGGGCTGTGTTGACTGAACATCATGGATCTTTCATTCATGGCTGCACAGATCCCTGTCATGGGAGGAGCCTTCATGGACTCACCCAATGATGATTACAGCGCAGATCACTCTTTGTTCAACTCCTCGGCAAGTGTCCACGCTGCTGCGATTACGGCCCAGAATCAACAGGAAGAGGCGCACTCAGTCTCCAGTGATGCAATCTGGCTTTGGATTGCCATTATTGCTACAATTGGAAATATTGTGGTTGTAGGGGTTGTCTATGCCTTCACCTTCTGAACACCAGAGCACACCAATATCTGGTCAACTGTGGACTTCCTGCTGTGGACTTCCTTTGAAGTTGAATTCTAGACATGGTAGCATGCATGAAATACTCCATTTAAAATGACTGGAAGATACAGTGAAGTGAGACACCATATGTAACTGTGATGGATCTCCATACTATAGTCTACTACGTTTAAAGTTTCATTTTGAATAGTTTCTGTCCTCACGTGCCAGTTTTGGACTATGGCGTTCAAACTATTTCTTGTagaataaacactttttttattattattattattatttttgttttttacatttctgaactCTTACATCTGAAGAAGCTTGACACATTCCAGTGAATCACACAGTAtctgaacaaattaaacaaaaaaacctgcCAAGATGAATGCTGATTTAAATGAGGAGAGGTGAAATGAATAGTTTAGGCTGAAAATATAGTCTACcaactaaaaaaactaaaaactaaaaaaacagttTGCATCATGTAGTGCACCAAGGGAATGGTTAATAATACCTGCCAAAGATTATAAAAGGTAGAAGAATGCTGTAACAGAGTTATTCTACAACAGatgtacatattatataaatgtctaACTGTATCATTTACGAAAACATTATTCAAACCTAGCTTTAAAGTGTACATGTATTCACTCTTAATATGATGTTTTCAACCGCACATGTGGAGCACACTGTCAAATAGTTTTCCTTTCATTCCAGGCTGCTCTGTGTGCAATAATGACAATCtttctattttaaaagtgaGTATCTATATCGTTTGTACAACATTTAGATTGATCAAATCTAGCTTTAAAATGCTCTGTGTGCACTAATAGTTTCTTGTGGTCTCAACATAACAACTAGTGCATCCATATCGCTTTACTCTTTTGCTGCATAAGACTGCTTCGTCAGCAGAAAAAAGAAGACAATCTTTTTTAATACAATCTAAGATGCACGCCATCATTTTGTAATCAGTCAAAATCGTAACAGAATATGCCGACTGAATACTCATGTACAAGTTTTcagttattaaatatgtttctactAAACAGCCTTTATCTTAGGGGTCTTCGGACTAATAACATCCCCCATGTTTATAGGGGTATACAGTTAGTATACCAGGTTACCTTAAAAGTCAAAAAGCTACACCATGATTCCCAATGCAGAACAAAAAGAACAATGTGACTTTTagattatttaaactttttcgtttttcattttgtttcatttaattggttatatttgtaaattaaagtcAATTACAAGGGAAATTATAATAAGGCACACTGTACAGGAGGCATATGTTGTCATGACAATTAAACCACCtctttgaaattatttgcagccccccccccccccccccccccccccccccccccaagcaaAAGGGGTATGTCTTGCAGTAGGTGCATCTCTGTTATGATTTTTGAATTTCACAAATCTGAAGGTTATGCTCTGACAGGTACTTTAATCCTTCCACTCACTGGGAGTGCTGGGAGTCTGGCCTTTGCATAAAATCAGTTTACATTCATGTAAATCAGTATACATTCACATCAAGAACTCACACCACTCCACCCCCACTGTAGCTTGTTTACACTGTACGTTTGGATGTGCTTTTGATTTGACAGCAggcacaaaagcaaaaataacttCAGAAATCACAAAGATTATTAACTCCATCCAGTGGGGGTATTGTTATTCAAAGGTTAATCAAATGACACtcagtttcagtgttttgtctTTACTGCGCCTTCTTCTAGGGCACTGATTTCTTGATAATCAACGCTAAGTTTCTGTGTGAACGTCAACAAATAACGTATTTGAGGATTTACGTATCTCGTCGTCAGCTTTGTCACTTTCATGTCTTTAGAAGCAAGGGAGTAAAGTTAACTATTGTATCTTACAGTCAAATATATCCTGTCTAGTTTTCAGCAATTAATCAACtgatagtgtttttattttgtttgcttcgtttgtttatttttataaatatcattCTGAAGAAGTAAACAAAATGAGGTTTCAAATAATTTCCTGGTTATGATCGTCGCAATGAATGTTACGACGATCACGTTTAAGacatggtttttgttttcaaatgattttcaatgttttaaataatattttttgtaattatcaattacttaattatttttgtaattactaAAAACTTAAgctaaacttaaaataaacaatgtctgTAAAAAAGATGGTTGAAATCCATATGAATGACTGACAGATATACAGTCAAATCAGGTTACATATATCTTCAGATTCTGTTAGCTTTGCAGTGTATAATCTCTCTCCATGTTTAAACTATACTCtgcttatatttaatatgtgaaGAGAataacaattgtgttttttttgtttatttgtttgttttgttcatatttcGTGGTGggatttttatttctgaatacaTTCTGAAGAACAATAAAGTTTATAATCTTTCTGTAAGTACCTTATGTAAATAGCCACATATTTTGAGGAGAAAAAGATATAAAGGTTATTACTACTGCAAATATGAGATATTTGCTTATATAACAGGCTTAGTGAAAAATGCTGACATTTTAGAGTATTTGTAGAACATTTTATCAGAGCAtatattaaatagaaataaaagatTTGTACGAGAAAGCTTTGGGTAGGATGTGCTGTACATACCTGAAGGAAGTTTATAATAGTGTTGAGAATTAAGGTCTTAAGAAGacctattatttttaatatgagtTGGGTGGCAACGTGTTAAAACGCATTGTACTTCTCTTACACAGGAATATCTTTTTTGTAACT

Function

NR:

description
PREDICTED: uncharacterized protein C14orf132-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000469 False 282 mRNA 0.49 3 15500971 15527014
TU189486 True 3254 lncRNA 0.35 3 15498172 15527390

Neighbor

gene id symbol gene type direction distance location
AMCG00000481 NA coding downstream 78602 15415530 ~ 15419570 (-)
AMCG00000479 ptpn21,LOC106601406,LOC107560165 coding downstream 86898 15391869 ~ 15411274 (-)
AMCG00000480 NA coding downstream 107222 15383657 ~ 15390950 (-)
AMCG00000477 ttc8,LOC106611037,LOC106591546 coding downstream 177957 15311001 ~ 15320215 (-)
AMCG00000476 NA coding downstream 188650 15297877 ~ 15309522 (-)
AMCG00000472 NA coding upstream 89573 15616963 ~ 15619029 (-)
AMCG00000494 NA coding upstream 725747 16253137 ~ 16266313 (-)
AMCG00000493 NA coding upstream 749608 16276998 ~ 16278955 (-)
AMCG00000487 bcl11ba,bcl11b,LOC107583625,LOC108270293,LOC107680755 coding upstream 1122681 16650071 ~ 16659677 (-)
AMCG00000488 NA coding upstream 1159715 16687105 ~ 16689646 (-)
G150514 NA non-coding downstream 202967 15294219 ~ 15295205 (-)
G150497 NA non-coding downstream 220116 15275963 ~ 15278056 (-)
G150504 NA non-coding downstream 225049 15271396 ~ 15273123 (-)
G150502 NA non-coding downstream 234596 15261387 ~ 15263576 (-)
G150485 NA non-coding downstream 247343 15250625 ~ 15250829 (-)
G150581 NA non-coding upstream 39369 15566759 ~ 15568750 (-)
G150586 NA non-coding upstream 51499 15578889 ~ 15580921 (-)
G150588 NA non-coding upstream 91831 15619221 ~ 15619788 (-)
G150626 NA non-coding upstream 229463 15756853 ~ 15758160 (-)
G150634 NA non-coding upstream 320645 15848035 ~ 15871468 (-)
AMCG00000482 NA other downstream 19123 15461846 ~ 15479049 (-)
AMCG00000475 NA other downstream 206917 15289303 ~ 15291255 (-)
AMCG00000464 batf other downstream 275429 15213402 ~ 15222743 (-)
AMCG00000457 NA other downstream 360249 15124025 ~ 15137923 (-)
AMCG00000436 NA other downstream 925740 14569962 ~ 14572432 (-)
G150729 NA other upstream 1277805 16805195 ~ 16834326 (-)
AMCG00000518 NA other upstream 1306369 16833759 ~ 16836603 (-)
AMCG00000533 NA other upstream 2026328 17553718 ~ 17578383 (-)
AMCG00000529 NA other upstream 2158175 17685565 ~ 17719171 (-)
AMCG00000521 NA other upstream 2348979 17876369 ~ 17878350 (-)

Expression


Co-expression Network