AMCG00000477 (ttc8,LOC106611037,LOC106591546)


Basic Information

Item Value
gene id AMCG00000477
gene name ttc8,LOC106611037,LOC106591546
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 15311001 ~ 15320215 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000477
GCCTGGCAGATGAAGAGATGGGGATATAACAGAGGAGTGGCATCATTTCTGAACCGCTACAGTTCAGAGGACCCAGGTCGCGGTTGCTGGGAGTGACGGGACGCCGCTCATCATCTGTCTGATTAGCCTTGTTAACGCATTTTGgatgtataaatgtatagttCAGTGATCTGTTGTATgcacttttaaaagcaaaaatatgGAACTGAGTATGGATCCCTTGTTTCTAGCATGGAGCTATTTTAGGAGACGTAAATTGCAGCTTTGTTCCGATGTCTGCTCTAAGATACTGGAGGAAAGTCCATTAGAccagGCCGCGTGGAGCCTGAAGACTCGGGCTCTGACAGAGATGGTTTATGTCGATGAGGTTGATGTGGACCAGGAGGGAATCGCAGAGATGATGCTGGATGAGAGCTCGATTGCACAGGTTGCACGCCCGGGGACATCTCTAAAACTTCCAGGGACAAGCCAGGGAGGAGGCCCAAGCCCTGCGGTCAGACCCATGACCCATTCGGGACGGCCCGTTACTGGGTTTGTTCGGCCCAGCACACAGTCTGGTAGGCCCGGGACGATGGAACAGGCCATCAAAACCCCGCGGACCGCCCACACCGCCCGCCCGGTCACCAGTGCATCTGGGAGATTCATCAGACTGGGAACGgCTTCTATGCTGACTAATCCTGAGGGGCCGTTTATAAACCTATCAAGATTAAACCTGACCAAGTATGCCCAGAAGCCCAATTTATCAAAGactTTGTTCGAATATATCTTCCACCATGAAAATGATATTAAAACtgCTTTAGACCTTGCTGCTCTAGCCACTGAGCATGCCCAGTTCAAAGACTGGTGGTGGAAAGTTCAACTGGGAAAATGCTACTACAGGCTGGGTTTGCACCGTGAAGCTGAGAAACAATTTAAATCTGCACTCAGTCAACAGGAAATGGTTGATACATACCTCTACTTGGCAAAGGTCTATCAGCGTTTGGATCAGCCATTAACAGCTTTAAACCTTTTCAAGCACGGTTTGGACCACTTCCCTGGAGAGGAAATGAATAACATCACATCAGCCACCGAGTATTACAAAGAGGTTCTGAAGCAGGACAACACCCATGTCGAAGCCATAGCGTGTATCGGCAGTAATCACTTCTACACGGATCAGCCTGAGATTGCACTTCGATTTTACAGACGTCTGCTCCAGATGGGGGTGTACAACTGCCAGCTCTACAACAATCTCGGCCTGTGCTGCTTCTACGCCCAGCAGTATGACATGACCCTGACGTCGTTTGAGCGCGCTCTGTCCCTCGCTGCGGACGACGAAGAGCAGGCCGATGTGTGGTACAACCTGGGACACGTGGCAGTGGGAATAGGGGACTTGAATTTAGCCTATCAGTGTTTCAAACTGGCcttggcaaacaacaacaatcatgcCGAAGCGTACAACAACCTCGCTGTCCTGGAGCTCCGCAGGGGGCGTGTGGAGCAGGCCAAAGCTTTCCTGCAGACAGCCTCCTCCCTGGCGCCTCACATGTATGAGCCTCACTTTAACTTTTCTTCGCTCTCGGATAAGATGGGAGACCTCCAGAGCAGTTACACTGCAGCCCAGAAATCAGAAGCCGTCTTTCCGGATCACGTTGACACGCAGCAAATCCTCAGACACCTGCGGCAGCATTTTGCCGCGCTGTGAAGAGTCCACCTGCATTGAAGCCATAAATAGTTCTGCTGTTATACAGACTGTTTATTAAGTGATGTAACCTGTAGTTTTTCCTGTTGCTTGtctaagttaaaataaatacttatatgTTCTCAGGATGGATTATAAGTATATTTCTATACAGCTCTTTTTATCAGCAAATGTCTCTAAATGTatgaatagaatagaatatatttgaaaaggaaTGTGCATTACAATAAACGTATCCTGTgatatataaatgctttttaaaatgaaatgtatttttaaaattgcaatggACAAAAggc

Function

symbol description
ttc8 Acts upstream of or within several processes, including Kupffer's vesicle development; animal organ development; and establishment of pigment granule localization. Predicted to be part of BBSome. Used to study ciliopathy. Human ortholog(s) of this gene implicated in Bardet-Biedl syndrome; Bardet-Biedl syndrome 8; and retinitis pigmentosa 51. Orthologous to human TTC8 (tetratricopeptide repeat domain 8).

NR:

description
PREDICTED: tetratricopeptide repeat protein 8-like isoform X1

GO: NA

KEGG:

id description
K16781 TTC8, BBS8; tetratricopeptide repeat protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000477 True 1977 mRNA 0.48 15 15311001 15320215

Neighbor

gene id symbol gene type direction distance location
AMCG00000476 NA coding downstream 1479 15297877 ~ 15309522 (-)
AMCG00000465 NA coding downstream 22546 15279489 ~ 15288455 (-)
AMCG00000467 NA coding downstream 55172 15253292 ~ 15255829 (-)
AMCG00000463 atf3,jdp2,LOC106611045 coding downstream 68848 15230288 ~ 15242153 (-)
AMCG00000466 flvcr2,LOC108242486 coding downstream 99130 15187199 ~ 15211871 (-)
AMCG00000480 NA coding upstream 63442 15383657 ~ 15390950 (-)
AMCG00000479 ptpn21,LOC106601406,LOC107560165 coding upstream 71654 15391869 ~ 15411274 (-)
AMCG00000481 NA coding upstream 95315 15415530 ~ 15419570 (-)
AMCG00000472 NA coding upstream 296748 15616963 ~ 15619029 (-)
AMCG00000494 NA coding upstream 932922 16253137 ~ 16266313 (-)
G150514 NA non-coding downstream 15796 15294219 ~ 15295205 (-)
G150497 NA non-coding downstream 32945 15275963 ~ 15278056 (-)
G150504 NA non-coding downstream 37878 15271396 ~ 15273123 (-)
G150502 NA non-coding downstream 47425 15261387 ~ 15263576 (-)
G150485 NA non-coding downstream 60172 15250625 ~ 15250829 (-)
G150581 NA non-coding upstream 246544 15566759 ~ 15568750 (-)
G150586 NA non-coding upstream 258674 15578889 ~ 15580921 (-)
G150588 NA non-coding upstream 299006 15619221 ~ 15619788 (-)
G150626 NA non-coding upstream 436638 15756853 ~ 15758160 (-)
G150634 NA non-coding upstream 527820 15848035 ~ 15871468 (-)
AMCG00000475 NA other downstream 19746 15289303 ~ 15291255 (-)
AMCG00000464 batf other downstream 88258 15213402 ~ 15222743 (-)
AMCG00000457 NA other downstream 173078 15124025 ~ 15137923 (-)
AMCG00000436 NA other downstream 738569 14569962 ~ 14572432 (-)
AMCG00000425 entpd5,LOC107586906,LOC105908609,LOC106571572,LOC106608092 other downstream 1049669 14245817 ~ 14261332 (-)
AMCG00000482 NA other upstream 141631 15461846 ~ 15479049 (-)
AMCG00000469 LOC108413331,LOC107549545,LOC107582175,LOC108269530,LOC108423442 other upstream 177957 15498172 ~ 15527390 (-)
G150729 NA other upstream 1484980 16805195 ~ 16834326 (-)
AMCG00000518 NA other upstream 1513544 16833759 ~ 16836603 (-)
AMCG00000533 NA other upstream 2233503 17553718 ~ 17578383 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_038394 ttc8 coding NW_003335638.2 KN149874.1 11 ~ 3574 (-)
grasscarp (Ctenopharyngodon idella) CI01046617_00000179_00001307 TTC8 coding CI01046617 null 179 ~ 1603 (-)