AMCG00000479 (ptpn21,LOC106601406,LOC107560165)


Basic Information

Item Value
gene id AMCG00000479
gene name ptpn21,LOC106601406,LOC107560165
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 15391869 ~ 15411274 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000479
ATGAGGCGAGCCTTTGTTGAAGAAGTAAATAGTCCCGCGCATGAATACGCCCGCCGGCTCTTCACGCTCGGGCGGAAGAGACGCGTGTTTTCAGAGGGACTGTGCAGGCCAGCATGGTGGTGCCAGCGCAGGCGATGCCGTCTGATTGACTTGTGTTGCCACTTGATCCACCTTTCCACTGCAGTCAGCCGAGGCCCGGGGATGATGTGTGCGGCTCACAGGGGGACCCTCTTGCTCGGGACGGTTGATATCGACGGGTACACATGCATCTGCTGAGTAGAAGCCTGAATCTCCAGTCACTTGTTGCTGGGCTTTTCTCCAAAAGCAAAGGGACACACATTTCTGGTCAGCTGAGGGCCGGCGCATCGGTGGAGAGACAACAATGCCCTTACCGTTTGGATTAAAACTAAAGAGAACTAGAAGGTACACCGTATCCAGTAAAAGCTGCCTTGTCACCCGCATCCAGCTGCTGAACAGCGAATTTGTGGAGTTCACCCTTTCTGTGGAGAGCACAGGCCAGGAGTGTTTGGAAGCTGTAGCACAACGTCTGGAACTGAGAGAGGTGACCTATTTCAGCCTTTGGTATCTCAACAAACAAAGTCAGCAGAGATGGGTAGATTTGGAAAAACCCCTGAAAAAACAACTTGATAAATATGGCTTGGAACCGACAGTTTACTTTGGGGTTGTGTTTTATGTGCCAAATGTGTCCCAACTACAACAAGAAATAACCAGATACCAGTATTACCTTCAGCTGAAGAAGGATGTTTTGGAGGGGCGGATACCCTGCTCGATTGAGCAAGCCATTCGATTGGCTGGTTTAGCAGTTCAAGCTGATTTTGGAGATTTTGATCATTATGAATCACAGGATTTTCTACAGAAGTTTGTGTTATTTCCAATTGGATGGATCCAGGATGAAAGAACGCTGGAAGAGGCCACACAGAAAGTGGCACTATTACACCAAAAGTACAGaGGACTTCAGCCATCGGAGGCTGAAATGATGTACATGCAAGAAGTGGAGAAGATGGATGGGTATGGCCAGGAAAGTTACCAGGCAAAGGACAGCCAGGGCACTGATATACTAATTGGGGCATGTCTGGACGGGATATTTGTGAAGCACAAAAACGGCAGGCCTCCCGTTATATTTAGGTGGAATGACATTAACAACATGACCCACAATAAGTCCTTCTTTGCTCTGGAGCTGGCAAGCAAAGAGGAAACCATTCAGTTCCAGACAgAAGACATGGAAACGTCCAAATATGTTTGCCGGATGTGTCTTGCCCGCCAcaaattttacaaaattaacaaaagcaGCCTAGAGCCATCAGATTCAGCACCTTCTGAGGGTTCCCAGAAGTCTTTGCTTACTCTTTCCTTTCCTCGCTTTCCAATGCTTTCTCGTTCTTCTCTGCCTAGCAAAGGACAATCCCAGACTACCGCAGTTAATCCGGTGAGGAGGAGATCGTCTACAAGAATGTCTCTGccAAAACCTCAACCCTACATGATGCCTCCACCCCAGATGCATTATAATGGCCACTACACTGAACCTTACACATCGTCTCAAGaCAATCTGTACATGAATAATCAGAACGGCTACTACTATCACTCCCAGACCAGCTTGGATAGGTCTCCTCACGAGTACAATGGCAGGATCCGGAACGGGAGTGTCTACAGCGCGCACAGCACCAGCTCGCTCAATAACCCACAGCACTACATGCAGCCATCACCCATGTCGTCCAACCCCAGCATCACGGGAAGTGATGTCATGAGGCCAGACTACATCCCCTCTCACCGCCATAGTGCTCTCATCCCTCCCTCCTACCGGGCCACCCCTGACTATGAAACTGTAATGCGGCAGAAGAACCGGGGAATGATGCAGGCAGATCGTCAGAGCCACTCCATGAGGAACCTCAACATCAGCAACTCATACGCCTACAGCCGCCCGGACCCGCTGGTCTACAGCCAGCCGGAGATCAGGGAGCACGCTCAATTCAGCGCTCACGGCACCAACCAGTATCCCTTCCACCTCAACTACAGCTTCCATAGTCCCTCACCATACCCCTACCCTACCGATAGACGCCCTGTGGTGGGTGCCGTGAGTGTCCCCGAGCTGACTAACGTGCAGCTCCAGGCTCAAGAGTACCCAGCTCCGAACATCATGAGAACCCAGGTGTATCGCCCACCCCCTCCCTACCCGTACCCCCGACCGGCCAACAGCACCCCTGATCTTTCCCGCCACCTGTATGTCAGCAGCAGCAACCCGGACCTGATCACGCGCCGGGTGCACCACTCCGTGCAGACCTTCCAGGAGGACAGCCTTCCCGTGGCACACTCCCTGCAGGAGGTGAGCGAGCCCCTGACCACTGCCCGGCACGCCCACATGCAGAAGCGCAACAGCATTGAGATCGCCGGGCTGGCATACGGCTTCGAGGGCATGAGGCTGAAGGAGAGGACCATGTCGGCCTCTGCCGCCGAGGCTCCCCCACTCAGGGAGACCACCTCGGGCTCACAGCTCAACGTGTTCCTGGAGAGGACGAAGCCCGAGGACGGCGGCAGCAGGGAAGACCTGCGCTACGGACACAAGAAGTCCCTCTCCGACGCCACCATGCTGGTGCACAGCAgcggagaggaggaggagttcGAGGATGACAACGGCAGGCACACACCTCAGTCCCAGGATGCCGCTGGCGGCACTGAGCAGCACATGGCCATGCTGGGCCATCCGCCCGCTGAGCCAGTCTCTGGGTACCCCTACAACAGTGCCCCCTCCCTGCCCGGTCCCCTCACTTACCAGCCACACACTTTCACCCGCGAGCCCGAGATAGAGACGCTGACTGGAGAGGGCAATCCAGTCTACCTGCTGGTCGATGGCAGGCCTCAGAGAAGGGAGGGAGCTGTGCTGGTGCCATCCGTCTCGGAGTCGGACCTCAGTGGCTCAGCTCGGCAACGAGCCAAGAGAGACGCTGCCAAAAAGAGACCTGTGTCTGATGTGCCATCTGGCAAGAGAAACCCCCTGGAGGGACTCCCACCACTGGGAGGGATGAAAAAAGGAAGCAGGTCAGACCTGAAGAAAATGGGTCCACTGAAACTGGCAGCTCTGAACGGACTGACCCTGTCCAGGATGCCTCTACACGACGAAACCAAGGATGAGCCCGAGAGAGCCTCGAACGACGAGAGGTGCAAAACCCTGGAGCAGCGCATGGAGCAGGGCATGGTGTTCACGGAGTACGATCAGGTGCCCAAGAAGCGCGGCAACGGCGAGTGCTCGATCGCCTTGCTGCCCGAGAGCTCGGAGAGGAACCGCTTCCAGGACGTCCTGCCCTACGATGACACGCGAGTGGAGCTGGTGCCCACCAAAGAGAACAACACGGGCTACATCAACGCTTCTCATATCAGGGTGACGATAGGCGGACAGGAGTGGAGTTACATCGCCACACAGGGGCCACTCCAGAACACTTGCCAGGACTTCTGGCAGATGGTGTGGGAACAAGGGGTTGCTATCATAGCGATGGTGACTGCAGAGGAGGAGGGTGGCAGAGAGAAGAGCTTCAGGTACTGGCCGCGTCTCGGGTCGAGACACAACACCGTGACGTACGGGAGGTTTAAAATCACGACCCGGTTCCGGACAGACTCTGGCTGCTATGCCACAACCGGCCTGAAGATTAAGCACCTACTGACGGGACAAGAGAGGACGGTGTGGCACCTGCAGTACACAGACTGGCCAGACCACGGCTGTCCGGAGGACTTCAAGGGATTTTTATCATACTTGGAGGAAATACAGTCGGTGAGACGCCATACAAACAGCACCACAGACCCTAAGAACACTAACCTACCCGTATTGATACACTGCAGTGCTGGAGTGGGGAGAACTGGAGTTGTTATATTGTCTGAAATTATGATTGCCTGTCTGGAACACAATGAGATGCTGGACGTCCCCACTGTTCTGAACATGCTGAGACAGCAGCGAATGATGATGGTGCAGACCATTGCCCAGTACACCTTTGTTTACAAAGTGCTCATTCAGTTCCTAAAAAATTCCAGACTTATTTAACATGTTGTGTGAGTGGCACTCTGAAGAGCAGAGCACACCATCATCCGCCAGTGAATTCATACTCTACGAAGACGCAGGACTGACACCAGGTTGCCATGATTTTGCCAGGGTTCTCCTTCTGATTGTATATTCACTAAGGTAATGGAAAGAGTGGTGAGACTTTGTTTTCTCTCGAATAACGTCTTGCAGCGCCACTTAAgccacttttattttatttttcttagtgTTATAAAGGCATATTTACAATGTGATTCGGTATTTAATAAGGAAAATGCAGAGCACATCAGACGATCGAATCGAATCCAGTGCAGATCGATGCACCATCAATGTTTTTACCTGTTGACAGTATTATTCTAAATTTTGGGGAGtgaggttttacatttttaagaattGAATTAAGAAACTAATTAAGAAATCCAGcacttttttatgtatatagCAAACCTTGAATATGCTGCAATGCTTTATCAGTACCATATAACACTATTAATTGCAACACTATCCTTTATTAATTTTGgcttatttgctttttaaaaaaagcatctGTTTTAGCTTTGTGGAAGGTTGTGAGTGAATCTAGGGTTTTGGAAAGTGTGTGATGGATTCGTGGTTGACCTTAGTGGCTGGGATTTGAAAATCTGGGTTTCAGATATAAGTTTAATGCTGAATTGACAGTGAATAAAGTGGCTGATAGTACAGAAGTAGTCTTTGGTTATATGGCTCAGGACTTTTCTCTCAAAaaatttttaatatatatatttaaaaatatatataacagataaaacaaataaacatggttTTCTTTATAAAACCAGTTAGATTTCAATATCAGTCTATTGATATTTGAAGTCGATTGCAtaagctaatttaaaaaatatatataaaattcgAAGATTTGAATTGGATTATATCAATTAAGAATATGCACTTTATCCtaaattcaatttcagtttttatttagtaaGAAATTAGCAGTAAGAttacccttttttattttccttctattTTCCCCCCCAATCTTTTTAAGGAAAACCTTGAACTTTGAGAATCCAGTCCGCACCAGGTCTTGTTTAACAAATAGTCTACTTTTGTACTACTGTTCGTATGATACTAATTGAATAATCTAGTCTTTCTCTAATGCACTAGATGCCATGTAATCAATCCAGGAGCCAACACATACTTTAGATTCCTTCCTATGTGGCTACCAAATAGAAACaggttttttaaatgctattttaaCCTACTGCCATGAATTGgttgtaaaaaattaaaaaaaaatttaaaaaatcagagATTTAAAACCCCAGATCAGATCGAACTAATTACCTGAATGTTTAGGGAGGGGctacatcattattattcataataccATAGCATATAAAGCATATTTTAATCAGGTCTTTTAAAGGAAAGAttcataaaattacatttcgtgtttttttttatttatttccccagttttttatatatatatatatatatatatatacagctctggaaaaaattgagaccactgcaaaattttcagttttatttactatttataggtatgtgtttgggtaaaatgaacatttttgttttattttataaactactgaaaacatttctcccaaattccaaataaatatatgaatggagtggaatggctgccatacatgtagagatgctgatttaagaaaaaattgcagtggtctcttaattttttccagagctgtatatcataatttattgtaaactgtaaaattataataagCTCCTTCATTTAAGATGCCCTAGACATGCAAATGATAGGTAGCATTAGCTCAACCACTTCATTCCATTGTAACACTTgctttatttaagttatttttactATCCCTCCACACACACTTGTGGAAAGGTGGAGTAGTAACTAATCatgattcattttaatgacatcCTTAAAACAGAGACTAGATGTTCTGcaaaggaggaaaacaatgtCCCTTATATCTGCTTGATGgccacattttattatttggtgAAAACTAACACTAATGAGAACAACACCATCAGTTTATAGGTGAAGTAACATTATAATGACAAGGTATTTAAGAATGGTGGTTTCAGGGGATCgacattaacttttaaaatcaaaggCCTTTAGTAATTTTCAGTctgaagttaaaaatatatataaagtttggttttatttggaaAAGCTTTATGAACTTggttatacaacattttaatttaatgactGTAATCTGTGCTATGTAAAGATACAGTGGACTGCATTAACACTACAAGGTAGTGTATATATCATTGTacctgaaatatttgtaaatttaaatcTTTTTTCAAGGAGTTTAATTATTCCAAGTGCCTCATTGTACTctgaaatacattcaaaatgtgaattttacctactacattttttatatatgaaggaaaacaatcaaaatattgaAGGATTACTATTTTGTCTTGGAACGACAATCCCtttcaatgctttttttctgcatattcaaaaatatttataaattggTGGGTCATGAAGGGGTTTAACTAATGTTAAAATTGTATCAGCACGATGATTCCTTTCGCTTAGTATGTTTCCAGAGTGAAACAAGCATATCGGAAAATGAGCTGGGCACGTGAGGGCCTGGTGTATTGCTGCTGAAGATGATTCCAGTTGTTGctgtgttctgttttgtatgatttaaagcaagtgaaatgcttttGAATCCACATccatattaatgcatttatcagATGATTCACTGCAGGATTTTTTACGtttttggaatgaaaaccttACACAACAGTGCACTCATGAATTTGGGCTTGTCACTTCTCCCAGGGTGTGTGGAAATCATTGGcatctgatttgatttgatgcaCGGTGCTAAATGTAACCATTGTGTCTAGAGTACAACctgaattttaatattaataatttacttaatgCATAGAAAGCGCAAGTTCACTCTTGTAACATTTACAACCGTCTTGAACCTGAGCgattttaaacattaagaagataaataaatgaaaccacccccaacacacaattCTGATctaagaataaataatgtaatacaatgcaTGGAAGTCAAGAGTACTTCCTTGCACAGCTATGTTTTGTGCTCATTATAGACCAATTGCAGAAGGACTATATAGTTAAGTTGATGGTGGAGAAATATGTTGTTTGAGAATATAGCGTATAAATAATGGTTATCATAAGAATGTACAGTACTGGAATAAAGGCCGGTGAAGTGAATGAACAGTATGTGAAAGCTTTAAGGCTGAAGAACATTAGTTTCAGTTGTGCAGGTGTGTTCATTTCCTTTCAGATGCTGATTACAATGATGTGTCCAAGTCTTATGAGGTTTTATCTGTGcaatgggggcggggggggttaGTGGACGCTGCTCCTTAAGAGTTATTTGACAAGCCAGCAGTTTTGCCGAAGATTCCATCTTTTTACAGTGTTATTGTTGTAACCGAATGCTGTACAATTTCTAATATCTCTTCAGCTTTAATGTTACATGAAACGTATCGATTTGTAAAGCAATGTACAAATTGTATCTAAtgagcaaaaaaataatgtattcctgTTTAAAGAACTGTTTATTTAGAGGAATATATCTGGTTTATTTTctgctataaataaatatttgcaattaaaa

Function

symbol description
ptpn21 Predicted to enable protein tyrosine phosphatase activity. Acts upstream of or within epithelial to mesenchymal transition; heart morphogenesis; and somitogenesis. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm. Is expressed in brain; pectoral fin; pericardial region; somite; and ventricular zone. Orthologous to human PTPN21 (protein tyrosine phosphatase non-receptor type 21).

NR:

description
PREDICTED: tyrosine-protein phosphatase non-receptor type 21 isoform X1

GO:

id name namespace
GO:0001756 somitogenesis biological_process
GO:0001837 epithelial to mesenchymal transition biological_process
GO:0006470 protein dephosphorylation biological_process
GO:0003007 heart morphogenesis biological_process
GO:0005856 cytoskeleton cellular_component
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K18025 PTPN14_21; tyrosine-protein phosphatase non-receptor type 14/21

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000479 True 7698 mRNA 0.44 20 15391869 15411274

Neighbor

gene id symbol gene type direction distance location
AMCG00000480 NA coding downstream 919 15383657 ~ 15390950 (-)
AMCG00000477 ttc8,LOC106611037,LOC106591546 coding downstream 71654 15311001 ~ 15320215 (-)
AMCG00000476 NA coding downstream 82347 15297877 ~ 15309522 (-)
AMCG00000465 NA coding downstream 103414 15279489 ~ 15288455 (-)
AMCG00000467 NA coding downstream 136040 15253292 ~ 15255829 (-)
AMCG00000481 NA coding upstream 4256 15415530 ~ 15419570 (-)
AMCG00000472 NA coding upstream 205689 15616963 ~ 15619029 (-)
AMCG00000494 NA coding upstream 841863 16253137 ~ 16266313 (-)
AMCG00000493 NA coding upstream 865724 16276998 ~ 16278955 (-)
AMCG00000487 bcl11ba,bcl11b,LOC107583625,LOC108270293,LOC107680755 coding upstream 1238797 16650071 ~ 16659677 (-)
G150514 NA non-coding downstream 96664 15294219 ~ 15295205 (-)
G150497 NA non-coding downstream 113813 15275963 ~ 15278056 (-)
G150504 NA non-coding downstream 118746 15271396 ~ 15273123 (-)
G150502 NA non-coding downstream 128293 15261387 ~ 15263576 (-)
G150485 NA non-coding downstream 141040 15250625 ~ 15250829 (-)
G150581 NA non-coding upstream 155485 15566759 ~ 15568750 (-)
G150586 NA non-coding upstream 167615 15578889 ~ 15580921 (-)
G150588 NA non-coding upstream 207947 15619221 ~ 15619788 (-)
G150626 NA non-coding upstream 345579 15756853 ~ 15758160 (-)
G150634 NA non-coding upstream 436761 15848035 ~ 15871468 (-)
AMCG00000475 NA other downstream 100614 15289303 ~ 15291255 (-)
AMCG00000464 batf other downstream 169126 15213402 ~ 15222743 (-)
AMCG00000457 NA other downstream 253946 15124025 ~ 15137923 (-)
AMCG00000436 NA other downstream 819437 14569962 ~ 14572432 (-)
AMCG00000425 entpd5,LOC107586906,LOC105908609,LOC106571572,LOC106608092 other downstream 1130537 14245817 ~ 14261332 (-)
AMCG00000482 NA other upstream 50572 15461846 ~ 15479049 (-)
AMCG00000469 LOC108413331,LOC107549545,LOC107582175,LOC108269530,LOC108423442 other upstream 86898 15498172 ~ 15527390 (-)
G150729 NA other upstream 1393921 16805195 ~ 16834326 (-)
AMCG00000518 NA other upstream 1422485 16833759 ~ 16836603 (-)
AMCG00000533 NA other upstream 2142444 17553718 ~ 17578383 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000636_00000420_00011631 PTPN21 coding CI01000636 null 420 ~ 11631 (-)