AMCG00000487 (bcl11ba,bcl11b,LOC107583625,LOC108270293,LOC107680755)


Basic Information

Item Value
gene id AMCG00000487
gene name bcl11ba,bcl11b,LOC107583625,LOC108270293,LOC107680755
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 16650071 ~ 16659677 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000487
ATGAACATTCAGCCCCCGATGACTTTTGTGCTCTGTGAAAAGTTCAGCTTGTACAGTAGAGAGGAGCCAACGAGCTACATTTGCACAACATGCAAACAGCCCTTTAACAGCGCCTGGTTCCTCCTCCAGCATGCTCAAAACACACACGGGATCCGTATCTACCTGGACACAAACCCCTCCAGCACTTCCCTCACCCCGAGGATCACCATTCCTCCCCCCATGGGAGCCGAATCCATCCCTCCGTCTCCTCTCACCAACTTCCTGGGAGACAACAACCCCTTCCACTTGCTTCGGATGACTGGACCGGTGCTTCGGGAGCCGCCGGGGTTCGTGGAAAACCGCCTACCAAACACTCCTCCCTTCGTCAGTCCTCCCCCCCGCCATCACCTGGATCCCCACCGCCTGGAACGCCTTAGTGCCGAGGAAATGGGTTTAATCTCTCAACATCCCAGTGCCTTCGAAAGAGTCATGCGCCTGACACCCATGGCAATAGAGTCCCAATCTATGGATTTCTCACGGCGACTGAGAGAACTCGCAGGAAACAACAGCTCCACACCGCCACTTTCACCCAGTCGCGCCAACCCTATGCACCGTCTGCTCAACCCTTTCCAACCCAGCCCCAAATCCCCTTTCCTGAGCACCCCACCGCTGCCACCAATGCCCCCCAACAGCACCACACCTCCTCAGCCCCAGGCCAAGAGCAAGTCCTGCGAGTTCTGTGGAAAGACTTTTAAGTTTCAGAGTAATCTAGTCGTCCATCGGCGGAGCCACACAGGAGAAAAGCCCTACAAGTGCCAACTCTGTGACCACGCCTGCTCCCAAGCCAGCAAGCTCAAGAGACACATGAAAACGCACATGCACAAGTCTGGCTCGATGACGGGCAGGTCTGATGATGGGTTATCTACTACTAGTTCTCCAGAGCCGGGCACCAGTGAGATCACGGGCGAAGGGATTaaaaacagagagggagagttcAGGAACGAAAGCGAAACTTCTCTCGGCCAGGAaaacgaggaggaggaggaagaggaggaggaagaggaactGGAAAACGAAAGCAGGCCCGAATCAAATTTTAGCATGGACTCTGAGTTCAGTCGCAACCGGGAGAACGGTTCTAAACCGCCACCGGACGAGAAGGCCCTGTCCTTAGGCAAGATTGTGGAGAACGTGGGTCTGAGCACTATACAGCAGTACAATGACTTGATAGTCGACAATCGGAAAAGAGGCCCGTTTTCCAAAAGGAGCTCGGACGGGCAGCGCGACACTGGGGACGAAGACTCGGTGGTGGGAGAAGtagatcatcatcatcatcatcatcaggtGGAAGTAGGTGCTGTAAACGGTAGAAACTTTGGCTCAGGTGACACTTTCTCAGGATTGTTTCCTCGAAAGCCCACCCCTATCACGAGCCCCAGTTTGTCCAACTCCTCCGCCAAGAGAATCAAGGTGGAGAAAGACTTGGACTTACCTCCAGCGCCCCTTATCCCCTCTGAGAATGTCTATTCCCAGTGGCTGGTAGGTTATGCAGCTTCAAGGCACTTCATAAAGGATCCATTTCTAGGATTCACCGACTCCAGACAATCTCCCTTTGCCACATCCTCAGAGCACTCCTCAGAAAACGGCAGCCTGCGTTTCTCCACCCCTCCCGGGGACATGCTAGACGGGGGTCTCTCGGGCCGCAGTGGGACGGCAAGCGGCGGCAGCACCCCCCACCTGGGCGGCGGTCCCGGGCCGGGGAGGCCGAGCTCCAAGGAGGGTCGGAGAAGTGACACCTGCGAGTACTGTGGCAAGGTCTTCAAGAACTGCAGCAATCTGACGGTCCATCGACGCAGCCACACGGGGGAGCGACCGTACAAGTGTGAGCTGTGCAACTACGCCTGTGCCCAGAGTAGCAAGCTCACCCGCCATATGAAGACACACGGCCAGCTTGGACTTCCTGTGATGTGTAGTTGAACATTCTAAGAAGTAGCAACTTTATCACATAACGAATGCACAGCCGAATTCAGACTTTTTAAAAAACTCTGTATTCAGCAAGCACCACCTTTGCCTAAATCACAACGCTgcgttattttaaataatgcattttcccAATCCAGGCAACTTCGAGAgtttaaagaacattttctaacatgtaaaaaaaaaaaaaaaagttctactCAGTTGACCCGcactttataatttgtttttacaaaaaaaacggCTTCTGAGCAAGAAATTACGTTTAATGGATCTACTTGGCCTCACAAAAAGGGTTAAAGTACAAGGGAGCATCTGAGATTCAAGTGCCAGTGTTGCTAAGCATGGCATTCACAATACTGGCActataaaattgaaaattaatttattgggACAGTTTTTGTACTGCCATTCAATTTGACATGAGTGTGCCTTGAATACTGATCTTCCTATTTTAATGTCTCTTGAGACAAATGCAAcacttttgtgaagcaaaaGGATTGAgcgaaaaaaacataaaacaaattaaacttatGAATTCATCGACATAGTTCTAATTTGCAGAAAACTAAATCTAATACAATATCAGAAATTtttcaaaggaaaagaaacatgCATTTAGGTAAAAGTACCCAGCACAACTTTtatatgtgtctctgtgtgtgtatatgtatatatatacatatatgtgcacATACATATATCGAATTCTTCACTTCAGGACAAGACTGCATCCCTCGATAGAAAAACGCCGGAGTGGATTGTAATACCACAGATAGTCAAGGAAGAGACTGGACAAAATTCAGGAACAgcagaaacttaaaaaaaagaatttagTGCACTCTGTCTTAAAATACGTTTACAGTATTGAAATAAGTACAAGggtaaaacaattatttgtgtgtatgtgtgttttaaacgatcaagtattttttttttccaagtttgCTTATAAAGTTTCTCTGAATGCCATAGTGGCTATGTGTATATTGGTTTTTTGGTGACGGGGttttagtaaatatatataaatatatattacaattttctTGTTTACTGTAAAAGTATAccagtatttgtaatattggAGAATGCCTGggcattttacaaaaacaaaaaaaaaagaaaaa

Function

symbol description
bcl11ba Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in thymus. Human ortholog(s) of this gene implicated in immunodeficiency 49. Orthologous to human BCL11B (BAF chromatin remodeling complex subunit BCL11B).
bcl11b Enables sequence-specific double-stranded DNA binding activity. Involved in hematopoietic stem cell migration and lymphoid lineage cell migration into thymus. Acts upstream of or within positive regulation of transcription by RNA polymerase II. Predicted to be located in neuron projection. Predicted to be active in nucleus. Implicated in immunodeficiency 49.

NR:

description
B-cell lymphoma/leukemia 11B isoform 2

GO: NA

KEGG:

id description
K22046 BCL11B; B-cell lymphoma/leukemia 11B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000487 True 3086 mRNA 0.47 3 16650071 16659677

Neighbor

gene id symbol gene type direction distance location
AMCG00000493 NA coding downstream 371116 16276998 ~ 16278955 (-)
AMCG00000494 NA coding downstream 383758 16253137 ~ 16266313 (-)
AMCG00000472 NA coding downstream 1031042 15616963 ~ 15619029 (-)
AMCG00000481 NA coding downstream 1230501 15415530 ~ 15419570 (-)
AMCG00000479 ptpn21,LOC106601406,LOC107560165 coding downstream 1238797 15391869 ~ 15411274 (-)
AMCG00000488 NA coding upstream 27428 16687105 ~ 16689646 (-)
AMCG00000496 setd3,LOC100195551 coding upstream 62497 16722174 ~ 16736751 (-)
AMCG00000497 ccdc85c,LOC107740595,LOC107668618 coding upstream 89712 16749389 ~ 16758438 (-)
AMCG00000519 LOC105902331,LOC107678669,LOC107747948,LOC107555299,LOC107572128 coding upstream 133898 16793575 ~ 16794321 (-)
AMCG00000515 NA coding upstream 145042 16804719 ~ 16808751 (-)
G150661 NA non-coding downstream 416882 16232958 ~ 16233189 (-)
G150634 NA non-coding downstream 778603 15848035 ~ 15871468 (-)
G150626 NA non-coding downstream 891911 15756853 ~ 15758160 (-)
G150588 NA non-coding downstream 1030283 15619221 ~ 15619788 (-)
G150586 NA non-coding downstream 1069150 15578889 ~ 15580921 (-)
G150731 NA non-coding upstream 163352 16823029 ~ 16840596 (-)
G150852 psmc1,LOC108443803,LOC108428647,LOC107581524 non-coding upstream 1104913 17764590 ~ 17765401 (-)
G150853 NA non-coding upstream 1106270 17765947 ~ 17766735 (-)
G150865 calm1,LOC107396020,LOC102293206,LOC102778633,LOC103380713 non-coding upstream 1119551 17779228 ~ 17800956 (-)
G150965 NA non-coding upstream 1439901 18099578 ~ 18100896 (-)
AMCG00000469 LOC108413331,LOC107549545,LOC107582175,LOC108269530,LOC108423442 other downstream 1122681 15498172 ~ 15527390 (-)
AMCG00000482 NA other downstream 1171022 15461846 ~ 15479049 (-)
AMCG00000475 NA other downstream 1358816 15289303 ~ 15291255 (-)
AMCG00000464 batf other downstream 1427328 15213402 ~ 15222743 (-)
AMCG00000457 NA other downstream 1512148 15124025 ~ 15137923 (-)
G150729 NA other upstream 145518 16805195 ~ 16834326 (-)
AMCG00000518 NA other upstream 174082 16833759 ~ 16836603 (-)
AMCG00000533 NA other upstream 894041 17553718 ~ 17578383 (-)
AMCG00000529 NA other upstream 1025888 17685565 ~ 17719171 (-)
AMCG00000521 NA other upstream 1216692 17876369 ~ 17878350 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location