AMCG00000497 (ccdc85c,LOC107740595,LOC107668618)


Basic Information

Item Value
gene id AMCG00000497
gene name ccdc85c,LOC107740595,LOC107668618
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 16749389 ~ 16758438 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000497
ATGTTGTATTGGTCGATTGGCTGGGAAGGAAATGTATGGCTCCGTTGGGGCCACTTGGCTGAAGTGTTTCTCGTCAGCGCTATTCTGCTGTTCTTTTCGCAGCAGAGCAACTCCGGAGATCTGAAGACCCTTCGGAAAGGCTTTTCCCTGTACCACTCCGAGTCCcagctctcctctctgccccaGTATCAAGAGTCCCTGCAAAATGGTCCTGCTCGCCTGTCAGCCGGTGACCCGCCCTCCTCCTCGGGGGGGTACATCCCGTCGGTCCAAAAGCCAGAGGCAGTGGTGCACGCCATGAAGGTTCTCGAAGTTCATGAAAACCTGGACAAACAAGTTCCTGAGGATTACGAAGAGGACCTCAGTGAAAAGGAGAAAGCGATTGTTCGGGAGATGTGTAACGTCGTGTGGCGCAAGCTGGGAGATGCGGCCGGATCCAAACCATCGATCAGACAGCACCTCTCAGGAAACCAGTTTAAAGGACCTTTGTAG

Function

symbol description
ccdc85c Predicted to be involved in cerebral cortex development. Located in adherens junction.

NR:

description
PREDICTED: coiled-coil domain-containing protein 85C

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000497 True 492 mRNA 0.54 5 16749389 16758438

Neighbor

gene id symbol gene type direction distance location
AMCG00000496 setd3,LOC100195551 coding downstream 12638 16722174 ~ 16736751 (-)
AMCG00000488 NA coding downstream 59743 16687105 ~ 16689646 (-)
AMCG00000487 bcl11ba,bcl11b,LOC107583625,LOC108270293,LOC107680755 coding downstream 89712 16650071 ~ 16659677 (-)
AMCG00000493 NA coding downstream 470434 16276998 ~ 16278955 (-)
AMCG00000494 NA coding downstream 483076 16253137 ~ 16266313 (-)
AMCG00000519 LOC105902331,LOC107678669,LOC107747948,LOC107555299,LOC107572128 coding upstream 35137 16793575 ~ 16794321 (-)
AMCG00000515 NA coding upstream 46281 16804719 ~ 16808751 (-)
AMCG00000517 NA coding upstream 70357 16828795 ~ 16833690 (-)
AMCG00000516 LOC108413947 coding upstream 107371 16865809 ~ 16883174 (-)
AMCG00000500 sptlc2,LOC107751731 coding upstream 126606 16885044 ~ 16903230 (-)
G150661 NA non-coding downstream 516200 16232958 ~ 16233189 (-)
G150634 NA non-coding downstream 877921 15848035 ~ 15871468 (-)
G150626 NA non-coding downstream 991229 15756853 ~ 15758160 (-)
G150588 NA non-coding downstream 1129601 15619221 ~ 15619788 (-)
G150586 NA non-coding downstream 1168468 15578889 ~ 15580921 (-)
G150731 NA non-coding upstream 64591 16823029 ~ 16840596 (-)
G150852 psmc1,LOC108443803,LOC108428647,LOC107581524 non-coding upstream 1006152 17764590 ~ 17765401 (-)
G150853 NA non-coding upstream 1007509 17765947 ~ 17766735 (-)
G150865 calm1,LOC107396020,LOC102293206,LOC102778633,LOC103380713 non-coding upstream 1020790 17779228 ~ 17800956 (-)
G150965 NA non-coding upstream 1341140 18099578 ~ 18100896 (-)
AMCG00000469 LOC108413331,LOC107549545,LOC107582175,LOC108269530,LOC108423442 other downstream 1221999 15498172 ~ 15527390 (-)
AMCG00000482 NA other downstream 1270340 15461846 ~ 15479049 (-)
AMCG00000475 NA other downstream 1458134 15289303 ~ 15291255 (-)
AMCG00000464 batf other downstream 1526646 15213402 ~ 15222743 (-)
AMCG00000457 NA other downstream 1611466 15124025 ~ 15137923 (-)
G150729 NA other upstream 46757 16805195 ~ 16834326 (-)
AMCG00000518 NA other upstream 75321 16833759 ~ 16836603 (-)
AMCG00000533 NA other upstream 795280 17553718 ~ 17578383 (-)
AMCG00000529 NA other upstream 927127 17685565 ~ 17719171 (-)
AMCG00000521 NA other upstream 1117931 17876369 ~ 17878350 (-)

Expression


Co-expression Network