AMCG00000501 (snw1,LOC107681047)


Basic Information

Item Value
gene id AMCG00000501
gene name snw1,LOC107681047
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 16937777 ~ 16942568 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000501
atgtcgCTAGCAAGTTTTCTGCCGGCTCCCACCCAGCTGTCCCAGGACCAGCTGGAGGCGGAGGAGAAGGCTCGGTCCCAGAGGTCCCGGTCCACGGCTCTGGTGTCTTCCCGCAGAGAGCCGCCTCCCTATGGGTACAGAAAGGGCTGGGTCCCCAGGGCACTGGAGGATTTCGGGGATGGAGGCGCCTTCCCGGAGATTCACGTTGCCCAGTACCCCCTGGAGATGGGCAGGAAGAAGAAAACCTCCAATGCTTTGGCTGTGCAAGTGGATGCTGAAGGGAAGATCAAATATGATGCGATTGCGAGGCAAGGGCAGGGGAAAGACAAGGTCATATACAGCAAGTTCACAGATCTGCTGCCAAAGGAAATAATGAATGAGGATGACCCAGAGCTGCACCGGCCTGATGAGGAAGCAGTGAAAGAGTTGACCGAGAAGACCAGAGCAGCTCTCGACAAGCAGGTGTCACAGAAGATCGCCGCAGCCATGCCTGTGAGAGCAGCTGATAAGCAAGCGCCTGCTCAGTACATCCGGTATACCCCGTCTCAGCAAGGAGTTGCTTTTAATTCTGGAGCCAAGCAAAGGGTGATCCGTATGGTGGAAATGCAAAAGGACCCCATGGAACCACCACGCTTCAAgATCAACAAGAAGATTCCTCGAGGACCCCCGTCCCCCCCTGCGCCGGTCATGCATTCTCCAAGCAGAAAGATGACTGTAAAAGAACAACAGGAGTGGAAGATCCCACCGTGCATATCAAACTGGAAAAACGCAAAGGGTTACACTATTCCACTAGACAAACGTTTAGCTGCCGACGGCCGAGGGCTTCAGACGGTGCACATCAATGAAAACTTTGCCAAGCTGGCTGAGGCACTCTACATCGCAGACAGAAAGGCTCGAGAAGCAGTGGAGATGCGCGCTCAAGTGGAAAGGAAAATGGCccaaaaggaaaaggagaaaaaggagGAGAAACTCAGGGAGCTGGCCCAGATGGCAAGAGAGCGGAGAGCAGGCATCAAGGGCCACGGAGAAAAAGGTGCAGAAGATGGAGAGGTCCGAGAGCGTGACGAAATCCGACACGATCGGAGGAAAGAGAGACAGCACGACCGGAACATCTCCAGAGCTGCCCCCGACAAGAGGTCTAAATTGCAGAGGGACCAGGACAGAGACATCAGCGAGCTCATTGCCCTGGGTCAGCCCAATCCCCGGCCTTCCAACGAAGCGCAGTACGACCAGCGGCTCTTCAACCAGAGCAAGGGGATGGACAGTGGCTTTGCTGGTGGTGAAGATGAGGTCTATAATGTGTACGACCAGCCCTTCAGAAACGGCAGAGATATGGCACAGAACATTTACAGGCCCAGTAAGAACGCCGATCGAGATCTATACGGTGACGACTTAGACACGCTGATGCAGAATAACCGATTCGTCCCCGACAAGGAATTCACTGGCACAGACCACGGGCCCCGCAGGGACGGCCCGGTCCAGTTCGAGGAGGATCCTTTCGGTCTGGATAAGTTCTTGGAGGAGGCCAAGCAGCACGGCGGCTCAAAGCGCCCCTCCGCCAGCGGCCGCTCGAAGGATTATGACCACGATAAGAAGCGCAGGAAGGAATGA

Function

symbol description
snw1 Acts upstream of or within neural crest formation and positive regulation of BMP signaling pathway. Predicted to be located in nucleus. Predicted to be part of spliceosomal complex. Is expressed in ectoderm; mesoderm; and neural plate. Human ortholog(s) of this gene implicated in breast cancer and pancreatic cancer. Orthologous to human SNW1 (SNW domain containing 1).

NR:

description
PREDICTED: SNW domain-containing protein 1

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0030513 positive regulation of BMP signaling pathway biological_process
GO:0014029 neural crest formation biological_process
GO:0005681 spliceosomal complex cellular_component

KEGG:

id description
K06063 SNW1, SKIIP, SKIP; SNW domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000501 True 1611 mRNA 0.55 14 16937777 16942568

Neighbor

gene id symbol gene type direction distance location
AMCG00000499 NA coding downstream 1980 16927608 ~ 16935797 (-)
AMCG00000500 sptlc2,LOC107751731 coding downstream 34547 16885044 ~ 16903230 (-)
AMCG00000516 LOC108413947 coding downstream 54603 16865809 ~ 16883174 (-)
AMCG00000517 NA coding downstream 104087 16828795 ~ 16833690 (-)
AMCG00000515 NA coding downstream 129026 16804719 ~ 16808751 (-)
AMCG00000534 NA coding upstream 514421 17456989 ~ 17459798 (-)
AMCG00000531 NA coding upstream 519838 17462406 ~ 17465702 (-)
AMCG00000532 NA coding upstream 539095 17481663 ~ 17508555 (-)
AMCG00000535 gtf2a1,LOC107581504,LOC106571676,LOC107712853,LOC107721813 coding upstream 602795 17545363 ~ 17552867 (-)
AMCG00000511 NA coding upstream 654892 17597460 ~ 17600490 (-)
G150731 NA non-coding downstream 97181 16823029 ~ 16840596 (-)
G150661 NA non-coding downstream 704588 16232958 ~ 16233189 (-)
G150634 NA non-coding downstream 1066309 15848035 ~ 15871468 (-)
G150626 NA non-coding downstream 1179617 15756853 ~ 15758160 (-)
G150588 NA non-coding downstream 1317989 15619221 ~ 15619788 (-)
G150852 psmc1,LOC108443803,LOC108428647,LOC107581524 non-coding upstream 822022 17764590 ~ 17765401 (-)
G150853 NA non-coding upstream 823379 17765947 ~ 17766735 (-)
G150865 calm1,LOC107396020,LOC102293206,LOC102778633,LOC103380713 non-coding upstream 836660 17779228 ~ 17800956 (-)
G150965 NA non-coding upstream 1157010 18099578 ~ 18100896 (-)
G151071 NA non-coding upstream 1431230 18373798 ~ 18374097 (-)
AMCG00000518 NA other downstream 101174 16833759 ~ 16836603 (-)
G150729 NA other downstream 103451 16805195 ~ 16834326 (-)
AMCG00000469 LOC108413331,LOC107549545,LOC107582175,LOC108269530,LOC108423442 other downstream 1410387 15498172 ~ 15527390 (-)
AMCG00000482 NA other downstream 1458728 15461846 ~ 15479049 (-)
AMCG00000475 NA other downstream 1646522 15289303 ~ 15291255 (-)
AMCG00000533 NA other upstream 611150 17553718 ~ 17578383 (-)
AMCG00000529 NA other upstream 742997 17685565 ~ 17719171 (-)
AMCG00000521 NA other upstream 933801 17876369 ~ 17878350 (-)
AMCG00000539 NA other upstream 1064106 18006674 ~ 18009850 (-)
AMCG00000559 NA other upstream 1362517 18305085 ~ 18307793 (-)

Expression


Co-expression Network