AMCG00000515


Basic Information

Item Value
gene id AMCG00000515
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 16804719 ~ 16808751 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000515
ATGATCAACAATATTAGAAAGCCATTCATGCACcttcTTCCTTGGAATTGGAAGTTTGTGAAGGAGGTAGAGGATGCTGCAGAGCTTCTACGCAGCACTGGAAGAGAGTgcattgaaaacagaaaaagagcGATGAGAAATAAAGAGGACGTGCCAAAGGATATACTGACCAAAATTCTGCAATGTGCTGTGGATGAAGGAGGATATGATGATGAACACATGGCAAGAAACAACAGCCAGTCAAATTGCTTTTACAATACTGGAACTGGCAAGACACCCAGAGATAACAGAAAAGTTTTGAAAGAGTCTCTGAGAATCTATCCCCCTGCCCCACTCATGACTCGCTTGATCACCAAAGACACAGTCATCGATGGGATTCGCATTCCATGGGGGGTTACTGTATTTTTCAATACTTATGTCATGGGAAGGATGGAAAGGTTTTTCAAAGACCCTCTCAAATTTGATCCAGACAGATTTCACCCAGATGCTCCAAAGCCGTACTTCTGTTACTTCCCCTTTGCTCTGGGCCCCCGCTCATGCCTCGGACAAAACTTTGCACAGATGGAGGCTAAAGTCGTGATGGCAAAACTCTTACAGAGGTTTACATTTCAACTGGTTCCAGGGCAATCATTTGCAATTTTGGACTCAGGAGCTCTAAGGCCTAGAGATGGAGTCGTGTGCACAATCAAGGCTCGAagcaaaatgaacaaataaccCGAGTCATTATTGACTTAAATGATCCATATTGTCTGCCTGCTTCACACAATCAAAAAAGGATATTAGTAAATTACATAACTTCTATGAAACATACCAAAATATTAGTATTTTGCAGACCAATTTCTTTTGAAGATACATAAACCGGGTACATCTGAAATGATTCCGTCTGTGGAGAGAAGtgatcttatttaaaaatataacaaacacTGTAGCACAATTACATGAATACTATGAGGTGTTTGCACATTCATTActtgttcatgtgtgtgttgaAAATGTACTACCAGAAAATGGGGAAGTGAAGTTgtagacataaaacaaatatttctacACTGGTCTTCTGACGCTTTATTGACACCTAGTGGATATCTCCCTGacatgtctttaaaaacaatacagacaTTTGGGTAACCTCATATGTATTCAGTGTGAACTGAAAATCACAACCTGCTCAGAGGTGTGCATACTGATTTGTTCttttgtgatttattgtatAGCTGCTGTgctaaaacattaaatatctaATACATGTTAACATAAATCATCTTTATGGGCTATTGT

Function

GO: NA

KEGG:

id description
K07440 CYP46A1; cholesterol 24-hydroxylase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000515 True 1278 mRNA 0.39 9 16804719 16808751

Neighbor

gene id symbol gene type direction distance location
AMCG00000519 LOC105902331,LOC107678669,LOC107747948,LOC107555299,LOC107572128 coding downstream 10398 16793575 ~ 16794321 (-)
AMCG00000497 ccdc85c,LOC107740595,LOC107668618 coding downstream 46281 16749389 ~ 16758438 (-)
AMCG00000496 setd3,LOC100195551 coding downstream 67968 16722174 ~ 16736751 (-)
AMCG00000488 NA coding downstream 115073 16687105 ~ 16689646 (-)
AMCG00000487 bcl11ba,bcl11b,LOC107583625,LOC108270293,LOC107680755 coding downstream 145042 16650071 ~ 16659677 (-)
AMCG00000517 NA coding upstream 20044 16828795 ~ 16833690 (-)
AMCG00000516 LOC108413947 coding upstream 57058 16865809 ~ 16883174 (-)
AMCG00000500 sptlc2,LOC107751731 coding upstream 76293 16885044 ~ 16903230 (-)
AMCG00000499 NA coding upstream 118857 16927608 ~ 16935797 (-)
AMCG00000501 snw1,LOC107681047 coding upstream 129026 16937777 ~ 16942568 (-)
G150661 NA non-coding downstream 571530 16232958 ~ 16233189 (-)
G150634 NA non-coding downstream 933251 15848035 ~ 15871468 (-)
G150626 NA non-coding downstream 1046559 15756853 ~ 15758160 (-)
G150588 NA non-coding downstream 1184931 15619221 ~ 15619788 (-)
G150586 NA non-coding downstream 1223798 15578889 ~ 15580921 (-)
G150731 NA non-coding upstream 14278 16823029 ~ 16840596 (-)
G150852 psmc1,LOC108443803,LOC108428647,LOC107581524 non-coding upstream 955839 17764590 ~ 17765401 (-)
G150853 NA non-coding upstream 957196 17765947 ~ 17766735 (-)
G150865 calm1,LOC107396020,LOC102293206,LOC102778633,LOC103380713 non-coding upstream 970477 17779228 ~ 17800956 (-)
G150965 NA non-coding upstream 1290827 18099578 ~ 18100896 (-)
AMCG00000469 LOC108413331,LOC107549545,LOC107582175,LOC108269530,LOC108423442 other downstream 1277329 15498172 ~ 15527390 (-)
AMCG00000482 NA other downstream 1325670 15461846 ~ 15479049 (-)
AMCG00000475 NA other downstream 1513464 15289303 ~ 15291255 (-)
AMCG00000464 batf other downstream 1581976 15213402 ~ 15222743 (-)
AMCG00000457 NA other downstream 1666796 15124025 ~ 15137923 (-)
AMCG00000518 NA other upstream 25008 16833759 ~ 16836603 (-)
AMCG00000533 NA other upstream 744967 17553718 ~ 17578383 (-)
AMCG00000529 NA other upstream 876814 17685565 ~ 17719171 (-)
AMCG00000521 NA other upstream 1067618 17876369 ~ 17878350 (-)
AMCG00000539 NA other upstream 1197923 18006674 ~ 18009850 (-)

Expression


Co-expression Network