AMCG00000516 (LOC108413947)


Basic Information

Item Value
gene id AMCG00000516
gene name LOC108413947
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 16865809 ~ 16883174 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000516
ATGCCCCGGGTCCGAGGGACAGCGCCCTGGCTGCTGTGGCTCGCCGTCTTGACACTTCTCCTGGTGTTGGGCAAGGGCTTCCCCGCTAAAAAGCCCAAGAGCAGCCCGCCGAGGGCCAGGGGTGGCACATCTGTGCAGGCAAAAATCCAGACAGCCTCCAGGGCAGCCCAGCCGGGTCGCGAGGTCATGCAGCTGAACAACCAGGTGAAGAGCTGGAAGCGCAGCCTCCCGCCCGCCCCACGCCGGCACAAGCGCCGGTATTCGGGCCAGCGCCTGGGGGACGTCCAGAGCCAGCCCAGATCGGACACCGAGGAAACCAAGCCCTTCATCCTGGACCTCAAAAACTTCCCCGACCTCGCCAACGCAGACCTCAACTCACAGAACCCAAACATCCAGGTGACCATTGAAGTCGTAGATGACCCCCAGACCGAGATGGAGATGGACCTCCTGAAGGAGAGCCGCAACGACTGGTCCCTGTCCTCGGTGGATTGGTTGGGCAACAAGAAACTGTTCTGGCCCTTGTTCTGGGAATACCCGGACTCAGGCGAGGACGGCACGGGTACGATGAGCCTGGAGGACACGGAGGACGATTACGCTTTCGAGTACGACAGCGAGGAGTCTGTCCTCAGTGGTGTGGGCAGGGACTGGGACGGCAGGTGGAACAAGGGCTGGGACTCCAAGGACAACTACGAGTACGACGAGGAGGACGAGTGGAGCGCCTGGTCCCCGTGCAGCGTGACGTGTGGCTCCGGGAACCAGAAGAGAGTGCGCTCTTGTGGCTACGCCTGTACGGCCACCGAGTCCCGGAGCTGCGACCTCAGCCGTTGTGCAGACGATATGAACGCAGTAACAGACCTGATGCCGTATGACACGGAAAATGGCACCGAGCTTTTCGATGCAGATGTGGACAGCTGTGAAAAGTGGCTCAACTGTAAGAGCGACTTCCTCCAGAAATATCTTCACCAAGTCCTGACCGAACTCCCCAGCTGTCCCTGCAGTTACCCATCCGAAGTGGTCTACAGTGCTGTCAACATCTTCGACGAGAAGCTGAAGAAGACATACCGGTGGCGGGACGCTAGCGGGCCCAAGGAACGCCTGGACATCTACAAACCCACGGCCCGGTTCTGTGTCCGCTCCATGCTCTCCTTCGACAGCACCACGCTGGCGGCGCAACACTGCTGCTACAACGACCACATGAGACTGATCACCCGGGGGAAAGGCGCGGGGGCCCCGAATCTTATCAGCACCGAGTTTTCCCCTGAACTGCACTACAAGGTGGACGTGCTGCCATGGATTTTGTGCAAGGGGGACTGGAGCCGGTTCCATGCCGTGCGCCCACCCAACAACGGCCTTCAGTGCGCCGAAAATCCAGCCGAGGACGTGTACATGAATGAGCTGGAGGAAGCAAGAGAATActaa

Function

NR:

description
PREDICTED: isthmin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000516 True 1419 mRNA 0.60 6 16865809 16883174

Neighbor

gene id symbol gene type direction distance location
AMCG00000517 NA coding downstream 32119 16828795 ~ 16833690 (-)
AMCG00000515 NA coding downstream 57058 16804719 ~ 16808751 (-)
AMCG00000519 LOC105902331,LOC107678669,LOC107747948,LOC107555299,LOC107572128 coding downstream 71488 16793575 ~ 16794321 (-)
AMCG00000497 ccdc85c,LOC107740595,LOC107668618 coding downstream 107371 16749389 ~ 16758438 (-)
AMCG00000496 setd3,LOC100195551 coding downstream 129058 16722174 ~ 16736751 (-)
AMCG00000500 sptlc2,LOC107751731 coding upstream 1870 16885044 ~ 16903230 (-)
AMCG00000499 NA coding upstream 44434 16927608 ~ 16935797 (-)
AMCG00000501 snw1,LOC107681047 coding upstream 54603 16937777 ~ 16942568 (-)
AMCG00000534 NA coding upstream 573815 17456989 ~ 17459798 (-)
AMCG00000531 NA coding upstream 579232 17462406 ~ 17465702 (-)
G150731 NA non-coding downstream 25213 16823029 ~ 16840596 (-)
G150661 NA non-coding downstream 632620 16232958 ~ 16233189 (-)
G150634 NA non-coding downstream 994341 15848035 ~ 15871468 (-)
G150626 NA non-coding downstream 1107649 15756853 ~ 15758160 (-)
G150588 NA non-coding downstream 1246021 15619221 ~ 15619788 (-)
G150852 psmc1,LOC108443803,LOC108428647,LOC107581524 non-coding upstream 881416 17764590 ~ 17765401 (-)
G150853 NA non-coding upstream 882773 17765947 ~ 17766735 (-)
G150865 calm1,LOC107396020,LOC102293206,LOC102778633,LOC103380713 non-coding upstream 896054 17779228 ~ 17800956 (-)
G150965 NA non-coding upstream 1216404 18099578 ~ 18100896 (-)
G151071 NA non-coding upstream 1490624 18373798 ~ 18374097 (-)
AMCG00000518 NA other downstream 29206 16833759 ~ 16836603 (-)
G150729 NA other downstream 31483 16805195 ~ 16834326 (-)
AMCG00000469 LOC108413331,LOC107549545,LOC107582175,LOC108269530,LOC108423442 other downstream 1338419 15498172 ~ 15527390 (-)
AMCG00000482 NA other downstream 1386760 15461846 ~ 15479049 (-)
AMCG00000475 NA other downstream 1574554 15289303 ~ 15291255 (-)
AMCG00000533 NA other upstream 670544 17553718 ~ 17578383 (-)
AMCG00000529 NA other upstream 802391 17685565 ~ 17719171 (-)
AMCG00000521 NA other upstream 993195 17876369 ~ 17878350 (-)
AMCG00000539 NA other upstream 1123500 18006674 ~ 18009850 (-)
AMCG00000559 NA other upstream 1421911 18305085 ~ 18307793 (-)

Expression


Co-expression Network