AMCG00000524 (ttc7b,LOC106601235,LOC107654850)


Basic Information

Item Value
gene id AMCG00000524
gene name ttc7b,LOC106601235,LOC107654850
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 17820771 ~ 17865282 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000524
GAAATTACTATTACTGCACTGACATCCTGAATCACAATTAGATCCCCCTCCTCCTGCGGTAGGTGGCGCTGTTTCCGCAGCCGCGCTTCCTCCGCGCCGCTGTTGCTGCCCTGGTTTGTTGTGCTCCGTCTCAGCCCGGAGACTCGGTTTTGGGGGAAAGATGACAGCGAGGAAGTCGGGGTCCCGGTTGGAGACGGAGATCGAGCGCTGCCGGTCCGAGGGCCAGTGGGACAAGATCCCGGAGCTGGTGCGGCAGCTGTCGGCCAAGCTCATATCAAACGATGATCTGGGGGAGCTCCTGCTCGGGGAGGCTAAGCTCCAGCAATACCTGAAAGAAAACCCCATCAAACAGGGGGCCAGTCCCCGGGGGGCCAAGCCGCGGCTGGTGGAGGTCAGGAAACACCTGACCGCCGCTCTGGACAGGGGGAACCTCAAGCCGGAGTACATGCAGGAGGCCAGTTTGCTGATGGCCAAGCTGAACTACGTGGAGGGCGATTACGGAGACGCCATCAGCCTCTACGCCAGGGTGGGGCTGGACGAGATGCAGCTGGTGGGGATTCCCGTGTACCGCCTGTCCATGATCGCAGAGGCGTACGCCACGAAAGGTCTGTGCTTAGAGAAAGTGCCCATGGCGTCTCCAGGCACTAATCGGAACGTGGATTCTAACCAAGAGATCATTACCTGTTACGAGAAATCCGGAGACATTGCCCTGCTCACTGGCCTGCACAACCGGAGTCCGAAGCCAGGCCCCGTCTCCCAGGAGCAGGAGCTGGGCTACTTCCTGGAGACGGGCCTTCAAAGGGCCCATGTCATCCACTTCAAAAATGGAAACTTGACGAGGGGTGTGGGGCGGTTCAGGGAGATCTTGAGAGCCGTGGAGACGAGAACGACCCAGAACCTGCGCATGACGATTGCCCGGCAGCTGGCCGAGATCTTGCTACGGGGGATGTGCGAGCAGAGCTACTGGAACCCCTTGGAAGACCCCCCACACCAGTCCCCCCTGGACGACCCCCTGCGCCAGGCCTCCCACACCAAGGACTACGCCCTGCCCAGGAGGCCCAGGGTCTACTCTGGAGAGAACATATTCTGTCCTCAGGAAAACACAGAAGAagctctgctgctgctcctaATTAGCGAGTCAATGGCCAATAGGGATGCAGTCCTAAGCAGAATTCCGGAACACAACAGCGACCGCATCATCAGTTTACAAAGCGCGTCAGTGGTGTACGACCTGCTAACGATAGCACTTGGAAGAAGAGGCCAATATGAGATGCTGTCTGAGTGTCTGGAACGAGCCATGAAGTTTGTGTTTGAAGAGTTTCACCTTTGGTATCAGTTTGCTTTGTCGCTGATGGCTGCTGGGAAGTCGGCCCGTGCCGTCCGTGTGCTGAAGGAGTGTATTCGGCTGAAGCCAGACGACCCCACCATTCCCCTCCTCGCGGTGAAGCTCTGCATCGGCACATTGCATTGGCTGGAGGAAGGCGAGCGCTTTGCAAAGATGGTGGTCGATATGGGAGAGAAGGCGTCCGAGTTCCGGGCCAAAGGCTACCTGGCTATCGGTTTGGTGTACAGCCTGAGGGCCACTGATGCATCATTGCGAGGAATGCAGGAGGAGTATCAGAAGAAAGCGCTTGGTGCTTTTCAGAGAGCCCAGAATTTGTCACCAACTGACCACCTGGCAGCTTTTTACCTGGCTCTACAGCTGGCTGTTTCCCGACAGATCCCGGAGGCCCTGGGCTACGTGCGCCAGGCTCTGCAGCTGCAGGGAGATGACGTCCACTCGCTGCACCTCCTGGCCCTGCTGCTGTCGGCGCAGAAACATTACCACGACGCCCTCAACATCATCGAAATGGCCCTCAGTGAATACCCGGAGAACTTCATCCTCCTGTTTACAAAAGTGAAGCTGGAGACAATCTGCCGAGGCCCGGACGAAGCTCTCCTGACCTGTAAGCACATGCTGCAGATCTGGAAGTCTTGCTACAACCTCACCAACCCCAGTGATTCGGGTCGGGGCAGCAGTCTGTTGGACCGAGCCATCGCAGACAGGAGGCAACTGAACACCATGACACTCCCCGACTTCAGTGACCCAGAAACGGGTTCAGTTCACGCCACTTCCATCGCCGCCTCCCGTGTGGAACAGGCGCTGTCGGAGGTGGCGTCCTCTCTGCAGAGCAGCGCACCTAAGCAAGGCCCTCTGCACCCCTGGATGACGCTGGCGCAGATCTGGCTGCACGCAGCGGAAGTCTACATAGGCATGGGGAAGCCCACGGAAGCCACGGCCTGCACCCAGGAGGCAGCCAACCTCTTCCCCATGTCCCACAATGTGCTCTTCATGAAGGGCCAGGTGGCCGAGCTGCGGGGCAACATGGACGAGGCCAAGCGCTGGTACGAGGAGGCCCTGTCCATCAGCCCCACCCATGTCAAGACCATGCAGAGACTGGGCCTGATTCTGCACCAGCTGGGCCGCTACAGCCTGGCGGAGAAGGTCCTGCGTGACGCAGTGCAGGTTAACTCCACGGCCCACGACGTGTGGAACAGCCTGGGCGAGGTGCTGCAGGCGCAGGGCCACGACGACGCTGCCACTGAGTGCTTCCTCACCGCCCTGGAGCTGGAGGCCAGCAGCCCCATCCTGCCCTTCACCATCATCCCCCGGGCCCTGTGAGTGACCCTgcctacccccccacccccagaccctcccacaccaccaccaccaagaCCACCACCTCCTCTGCCCCCCAGGGTTCTGTCCAGCCCCGAGGAGGTGCTCAAAAGCTTCAGTTGTCATCCCATCCACGGACTGTAAAAACAcgaaaaaatgtaaaaggacTGTAGCTGTATTAAAAAAGAGTGCAATGGAAATGTGAATTGTACCAGCATCGAGAGCTGGAATGAGTGACAGTTTGGTTACATACAGGATAAAACTGTAATCTGCAAATacagatatataaaatactgccCCACTCACTCCAGATGATCAAGTGTTTGACACTGGAGCCAACAATCGTTCGATGTTGCCACCCATTTCATTAGGGTTTCCCGTCCTGTGTTCATCAGTCAGGAGCTGTTCAGATTGGCGTGGAAAGTGCTAGCGGCCCTTCCTCGTGATGTGTACTCGGCTCTTTTGACCGCGCGAGAGATTACGGGGCAGCCTATCGTATCAAGATCTGATTCCACTGCTTGGCAGATCTGATTGTCCAACGATTTGAAGATTAATAATAGTTCTGCGCCATATGCAGATTCTCTCCTGCCAAACGGGAGGGTGGAGGAGAATACCAGCTGTCAGCTTCCACGCCGCCATGCATGTAAACAATGACCCGCAGAGGGAAGGGTGTCCAAGCCCCATTGTCAGCCTAAACCTCCTCCCACTCTTCTCGTTCTTTTGCATTCTGGTTTTGTATCAGATGTATCTCTCCAGGCTTGGGCTGGACTAACGATGAGTGGTTAGTCAGTGAGAGAGTCAGCGCTGTACAGTCAGTGGCTGGTTTTGTGCCAGATTTGTCAAAATTGTGGTGCGAGTGAGATTCTCAGTGGGAGGAAGGAGCAGGAAGGTGAGGACTGACTGCACTCAATAACAGACGGGAGCTGTAGGCCTGCCGACCTTTCACCCTGTGTTCAGGAAGGCGTGCTAATGAGACATGATAGGACCGCATGACAACAAGACAGCGACTGGTAAAAGCACAGCGATGACAGTAAATGGTTAACAGGCTGTGTGTGGGCACGTTGGAgagctatatttattttaatttttgaacTTAGTAGGGgccaaaaacacacagatgagTACGCGACACTGTCATCCTCCCATTGACCACAGATATTATTGACCAGCCTGCTACCAgtgataaaaatgtaaataaaactgtgCACACACTGCCAGGAAAAGCTAAACCCGTATCCCACAGGGCCGTGCATCCACCTGTTCGTATTTCAATCTACGGTGTGATTCCGATTTTTTGTCAATATTAGTTCCCCACCACCCTGCAGTTGAGAATTGCTGTtactttgtttagttttttgtgttacCGGGTTATTTTTATCCAATAGTTTGGGATTTGGTCACAACTGATGTCCTGAGAAACAGTTTGGAAGCATGTTGCTTGTGTTTCTCAGTTGCTCTTTAGTGTTGCTGTACTATTCATTTGTTCGCCCAGCCCAAATGCCAATAGTTTCGTTTAAGAATAGAAAAACTTCGACACGATGCCAtgttttataacaaaacaaaactgttgtcagtcttaaaagaaaataattcgCATTTTAATAACGGTAATGAATGCCAAAAACAGTGCGTGTTACAGCAGTGCGGACAGCTGTATGTGTTGATTCTGTTTAATCAAAGAATATATGTTTTGATCATGTTACCTTTTAGGTTGTGAACTTTACAAatccattattgttatttttgtaaattatattttacagtgggttttatgaaaatgttcagaagctgcaatatttatattttgatgttcAGTAGTTATTTCGTacttgaaagaaaatgtttaagcTTAGGACTGCTGTTTGAGAGAGGCATTATTTAAGAGAGAGATATTTAAACTGGAAATTATATTGTTGACATTCCTGAACTAAAAGATGTATCAATCGAAAAGACATGTAGGATCCTTTCTTGTATTGCATTCGTACTGTCTGTATGCCAAAGCATTCGTTATGTTTAATGTGTTCACCCAACCgagaagagagggaaaaaactCTGTATAGTTAGCTCTGAAATTATCCAACAGACGAATGTAATAtgtcaataaaaatatattggaatAGA

Function

symbol description
ttc7b Predicted to be involved in phosphatidylinositol phosphate biosynthetic process and protein localization to plasma membrane. Predicted to be active in plasma membrane. Orthologous to human TTC7B (tetratricopeptide repeat domain 7B).

NR:

description
PREDICTED: tetratricopeptide repeat protein 7B isoform X2

GO: NA

KEGG:

id description
K21843 TTC7; tetratricopeptide repeat protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000524 True 4780 mRNA 0.52 20 17820771 17865282

Neighbor

gene id symbol gene type direction distance location
AMCG00000523 NA coding downstream 31703 17773800 ~ 17789068 (-)
AMCG00000528 NA coding downstream 48026 17768083 ~ 17772745 (-)
AMCG00000510 foxn3,LOC107680774,LOC107751738,LOC107755777,LOC107583483 coding downstream 180207 17612034 ~ 17640564 (-)
AMCG00000511 NA coding downstream 220281 17597460 ~ 17600490 (-)
AMCG00000535 gtf2a1,LOC107581504,LOC106571676,LOC107712853,LOC107721813 coding downstream 267904 17545363 ~ 17552867 (-)
AMCG00000522 brms1la,brms1l,LOC107682295,LOC107693096 coding upstream 2145 17867427 ~ 17873428 (-)
AMCG00000544 NA coding upstream 76275 17941557 ~ 17943170 (-)
AMCG00000540 psma6b,LOC107664826,LOC103149670,LOC106935624,LOC107597861,LOC102217550 coding upstream 102750 17968032 ~ 17973913 (-)
AMCG00000538 NA coding upstream 111349 17976631 ~ 17998595 (-)
AMCG00000541 NA coding upstream 167795 18033077 ~ 18043323 (-)
G150865 calm1,LOC107396020,LOC102293206,LOC102778633,LOC103380713 non-coding downstream 19815 17779228 ~ 17800956 (-)
G150853 NA non-coding downstream 54036 17765947 ~ 17766735 (-)
G150852 psmc1,LOC108443803,LOC108428647,LOC107581524 non-coding downstream 55370 17764590 ~ 17765401 (-)
G150731 NA non-coding downstream 980175 16823029 ~ 16840596 (-)
G150661 NA non-coding downstream 1587582 16232958 ~ 16233189 (-)
G150965 NA non-coding upstream 234296 18099578 ~ 18100896 (-)
G151071 NA non-coding upstream 508516 18373798 ~ 18374097 (-)
G151119 NA non-coding upstream 572001 18437283 ~ 18453200 (-)
G151122 NA non-coding upstream 584262 18449544 ~ 18522790 (-)
G151133 NA non-coding upstream 629367 18494649 ~ 18565715 (-)
AMCG00000529 NA other downstream 101600 17685565 ~ 17719171 (-)
AMCG00000533 NA other downstream 242388 17553718 ~ 17578383 (-)
AMCG00000518 NA other downstream 984168 16833759 ~ 16836603 (-)
G150729 NA other downstream 986445 16805195 ~ 16834326 (-)
AMCG00000469 LOC108413331,LOC107549545,LOC107582175,LOC108269530,LOC108423442 other downstream 2293381 15498172 ~ 15527390 (-)
AMCG00000521 NA other upstream 11087 17876369 ~ 17878350 (-)
AMCG00000539 NA other upstream 141392 18006674 ~ 18009850 (-)
AMCG00000559 NA other upstream 439803 18305085 ~ 18307793 (-)
G151087 NA other upstream 546206 18411488 ~ 18412525 (-)
G151088 NA other upstream 547558 18412840 ~ 18413465 (-)

Expression


Co-expression Network