AMCG00000528


Basic Information

Item Value
gene id AMCG00000528
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 17768083 ~ 17772745 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000528
ATGAAGATGAAAACCCTGTGTATGATTTCGGTGTTGATTTTCGAGAGTACGGTGGCCGTGTCTGCGGTGCCAGACGACGAATGCAACGACGAGTTCCCCGCGCGGGAGAACTGCGAGTTCGACGAGGTGTGCGAGGACGCCTTCTGTGTCCACAACGAGTATGTCACCTGTCACATGAACAGGTGTGGGACGTGCGAGGCCGTCTTCCGGGGCTACGACAACCTCACCGTCAACTGCAATCAATTGACACCCAAGTGCCGCCTGATGCACCTGGAGATGCTGAACAAGCGGCGCACCGGGACCATCCTGCCCGGAGGGCGGCTGGACATCGAGTACGACCCGGAGTGCGACGGCTACGGCATGTTCAAGCCCAAGCAGTGCGACGACGACTCGAACCTGTGCTGGTGCGTGGACAGCGCCGGCGTGCGCGTCACTGACAAGACCGGGGACGACCCCAAGTGCGACCGGCTCGTCAGGGTCCAGAAACTGGCTTTTAAACTGGTCAAAGAATACACACTGAAGGCCACCCAGATCCTCGAGATAAATATTCAGGAACTATCCCAGGTGGTGTCGATACGGCTGACGGAGAACGGAACTAAAGATCCGGTGGATGTGGCCACCGTGGCGTACTACATAGAGAGAGACCTGAAGAACAGTAAATTCGGCCTTGAAGTCGACGGCAGGAGCCTGGAGGTCGAGCGGGACTCCATTAAAGTCCTGTTCTTCGACAACGAGCCCCCCCGCATGAACATGAAGACCATCTCGCCAGGGTTCGCTGCCATCATCATCGTCATAGCCCTGGCAATCCTCACAGGAATCGCAGTGTTTGTCGTAGTGAGAAGAAGAGCCGAACAGGAGAAGAAGAGATTCCAGTTCGaagtcattgagGGCCAGGGGCTGGACGACTACCATCTGGCTCAGAGAGACACCATGGCCTACTTTGTCATGTAATATGTTGAGTGTGTACAGAGTgctattttctatttgtattaatgtgacacaattgtaaatgtgttgGTACAAAACAGAATGTGCTTTAAGTTATTTTGTGTCCAACAAAGCTAGAGCCCATTGATTTACTTTTGCTTTATATATGtgacaatgtatttttgtctgtttttaagaaatgtttgcCCACAGCCTTGGGAAACCGCAGGAATATGTTGGATTACGAAGCAGGAACTCCAATTTAGTCACCAGAACACCTAGACAGCCGAGATCACTATTTGTATGGTGGAATTTTtctgcttaaataaaaacagcaaggaCGGAGAAAGTCAAAATGTTGACAGGTATAATACGTTCATATAGCTGCCGTACAGAATTTTTAACTATATGAAGTTAACCTTAAAGGTGTCTTTGATCCAAAATGTATAACATAGAAGCCCAAAAGAAGCAGTGTGTCTTTGTTAGCTGTAACAATGTAGTTTCAGCATTCAAGCCACGAGTTCACTTGTATAGTCTGTGGCTTTAATGCTGCTTATCACTTCTGTCTTTATAACCAGATTTTAACAATAACTTTCTCAATAGTCCATTATTGCCCAGATATCTCTTTATCTGCAGTGCAGCAAGAATGGAAACTCCTCCTTTCAGCAAAAGACATTTCATCTGAGTTAAGAGTAAAAAGTTATTTGAGCTTTGATGCCGAGGTATTCCCCGACACGCCTCTAGGTGGCGCCTCTCAtcttcagaaaataattcagtttagaGACCGTTTTGAACCCACACTTGGAAATACTGTCTTTACAGGTGTGACATATATGATAcaaaacaattttgtttttgcttgatcaagtattaaattgtattttgtttttaaatggaaatttgCTCAACAGTACAGTATAAAGTATGTCTGTGTAGACACCATACCTGGGCACCGGTCGACTCCCTCAGAGGACGTCCAGCAGGAGCTGCATGGAGACTCTCCAGTGAGGCACCTAGTCAGGTTCATATAGATCTCCGAGTCACTGCAACTGAGTTCTTACTAGACACCACGTCGGCAGTATGTCTGTCTTTGTATGAACTCGGATACCCATTCTTTTGCGACACAGAAAcccaattaatttgtaaaaaacgttacaaataaagtaaataaacccATACTACAAA

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000528 True 2112 mRNA 0.46 8 17768083 17772745

Neighbor

gene id symbol gene type direction distance location
AMCG00000510 foxn3,LOC107680774,LOC107751738,LOC107755777,LOC107583483 coding downstream 127519 17612034 ~ 17640564 (-)
AMCG00000511 NA coding downstream 167593 17597460 ~ 17600490 (-)
AMCG00000535 gtf2a1,LOC107581504,LOC106571676,LOC107712853,LOC107721813 coding downstream 215216 17545363 ~ 17552867 (-)
AMCG00000532 NA coding downstream 259528 17481663 ~ 17508555 (-)
AMCG00000531 NA coding downstream 302381 17462406 ~ 17465702 (-)
AMCG00000523 NA coding upstream 1055 17773800 ~ 17789068 (-)
AMCG00000524 ttc7b,LOC106601235,LOC107654850 coding upstream 48026 17820771 ~ 17865282 (-)
AMCG00000522 brms1la,brms1l,LOC107682295,LOC107693096 coding upstream 94682 17867427 ~ 17873428 (-)
AMCG00000544 NA coding upstream 168812 17941557 ~ 17943170 (-)
AMCG00000540 psma6b,LOC107664826,LOC103149670,LOC106935624,LOC107597861,LOC102217550 coding upstream 195287 17968032 ~ 17973913 (-)
G150853 NA non-coding downstream 1348 17765947 ~ 17766735 (-)
G150852 psmc1,LOC108443803,LOC108428647,LOC107581524 non-coding downstream 2682 17764590 ~ 17765401 (-)
G150731 NA non-coding downstream 927487 16823029 ~ 16840596 (-)
G150661 NA non-coding downstream 1534894 16232958 ~ 16233189 (-)
G150634 NA non-coding downstream 1896615 15848035 ~ 15871468 (-)
G150865 calm1,LOC107396020,LOC102293206,LOC102778633,LOC103380713 non-coding upstream 6483 17779228 ~ 17800956 (-)
G150965 NA non-coding upstream 326833 18099578 ~ 18100896 (-)
G151071 NA non-coding upstream 601053 18373798 ~ 18374097 (-)
G151119 NA non-coding upstream 664538 18437283 ~ 18453200 (-)
G151122 NA non-coding upstream 676799 18449544 ~ 18522790 (-)
AMCG00000529 NA other downstream 48912 17685565 ~ 17719171 (-)
AMCG00000533 NA other downstream 189700 17553718 ~ 17578383 (-)
AMCG00000518 NA other downstream 931480 16833759 ~ 16836603 (-)
G150729 NA other downstream 933757 16805195 ~ 16834326 (-)
AMCG00000469 LOC108413331,LOC107549545,LOC107582175,LOC108269530,LOC108423442 other downstream 2240693 15498172 ~ 15527390 (-)
AMCG00000521 NA other upstream 103624 17876369 ~ 17878350 (-)
AMCG00000539 NA other upstream 233929 18006674 ~ 18009850 (-)
AMCG00000559 NA other upstream 532340 18305085 ~ 18307793 (-)
G151087 NA other upstream 638743 18411488 ~ 18412525 (-)
G151088 NA other upstream 640095 18412840 ~ 18413465 (-)

Expression


Co-expression Network