AMCG00000529


Basic Information

Item Value
gene id AMCG00000529
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 17685565 ~ 17719171 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000529
ATGTTATTTGGATACAAGCCGTccaagTCAGAGACAAACCTGCTAATGGATCCAGTTctgcaaacacattttccagGCGTCCCCTTGGATCACTTTATACGTCTCATGGGGAGGAAATTGTCAGCGCAGGATCCCTACGAAAAGGCGAGACAGATCTTCATGGCGTTTGATGTGCACTgtcgTGGCTTCTTGACGGTAGAAGACTTCAAAAAGGCCTTCGCTTGCGTTGCACCTCACTTACCTGAGCGAACCGTGCAGGAAGTATTTCGGTAG
>TU189830
GTCCTTCAAAACAGTGTCCGTGGTTTCACTCGTATTGACAACATGAACATGTTTTCTTACAAAACACGTCTAAACGGACAAGAAAGACACATTTCCGCGGCTGACGAAAGGAAGTTAACTTTGGTTTTCCAGCAATGCGACGAAGGGGGAAAGGGCTATTTAAGACGAGAGGATCTGAAAATTGCTATAGTCATGTTATTTGGATACAAGCCGTccaagTCAGAGACAAACCTGCTAATGGATCCAGTTctgcaaacacattttccagGGAGGTGGATCGAGATTCAGACGGCCATGTAAGCTTTCTGGACTTTGAGTGTGTCATCAGTTGTGGACAAGACGATGACCTGTAGACCCTGGAAACATGGTAGATCAAATCATGGTGTTCATTGATGGTATAGAAACCAAACTGAGCTTACTGTTCAGAGTGGTTTGCTAGGATGAGATGCAATTTTAATATCATTGCTACCTGGAAAAGTGAATGTTTTTACGTCAGACATGCTAAACTCCAATATTTGAGCAAACTTCAGCTGCCACTTTTATATCactgaagtttaaaaaaataatatcgTATCAATCTTTGTCACGGACAGATTTATAGGGTTATATGCAAATAAACCATAATTTGTTCCATTGCAATGGTCTGACGGGATATTTCCAAAACTGTCCTCTCTAAACCGATGAAATACcactttttaaagtattaatcCTCTGATGAAATTCATCTTCACCTGAGAACCTGTGGTGAGAGCATCTGAAATTGAATATTATTAACTAATTTCTCTGTAATCAATCTGACACAAAGTAGTTACCCATAACGGTGCATTAAAAACCctccatattttaaaatgtacattttcaaggGATTTCGGAGGTTCTTCTTGTTCCACATGATTAAGGAACTGTAAatacttgtttgtgttttgtgagaTTTGCTGTGCTCCCTGCTGAAtaa

Function

GO:

id name namespace
GO:0051301 cell division biological_process
GO:0044428 obsolete nuclear part cellular_component
GO:0016592 mediator complex cellular_component
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component

KEGG:

id description
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast
ko04114 Oocyte meiosis
ko04914 Progesterone-mediated oocyte maturation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000529 False 273 mRNA 0.49 4 17711399 17718631
TU189830 True 955 lncRNA 0.38 4 17685565 17719171

Neighbor

gene id symbol gene type direction distance location
AMCG00000510 foxn3,LOC107680774,LOC107751738,LOC107755777,LOC107583483 coding downstream 45001 17612034 ~ 17640564 (-)
AMCG00000511 NA coding downstream 85075 17597460 ~ 17600490 (-)
AMCG00000535 gtf2a1,LOC107581504,LOC106571676,LOC107712853,LOC107721813 coding downstream 132698 17545363 ~ 17552867 (-)
AMCG00000532 NA coding downstream 177010 17481663 ~ 17508555 (-)
AMCG00000531 NA coding downstream 219863 17462406 ~ 17465702 (-)
AMCG00000528 NA coding upstream 48912 17768083 ~ 17772745 (-)
AMCG00000523 NA coding upstream 54629 17773800 ~ 17789068 (-)
AMCG00000524 ttc7b,LOC106601235,LOC107654850 coding upstream 101600 17820771 ~ 17865282 (-)
AMCG00000522 brms1la,brms1l,LOC107682295,LOC107693096 coding upstream 148256 17867427 ~ 17873428 (-)
AMCG00000544 NA coding upstream 222386 17941557 ~ 17943170 (-)
G150731 NA non-coding downstream 844969 16823029 ~ 16840596 (-)
G150661 NA non-coding downstream 1452376 16232958 ~ 16233189 (-)
G150634 NA non-coding downstream 1814097 15848035 ~ 15871468 (-)
G150626 NA non-coding downstream 1927405 15756853 ~ 15758160 (-)
G150588 NA non-coding downstream 2065777 15619221 ~ 15619788 (-)
G150852 psmc1,LOC108443803,LOC108428647,LOC107581524 non-coding upstream 45419 17764590 ~ 17765401 (-)
G150853 NA non-coding upstream 46776 17765947 ~ 17766735 (-)
G150865 calm1,LOC107396020,LOC102293206,LOC102778633,LOC103380713 non-coding upstream 60057 17779228 ~ 17800956 (-)
G150965 NA non-coding upstream 380407 18099578 ~ 18100896 (-)
G151071 NA non-coding upstream 654627 18373798 ~ 18374097 (-)
AMCG00000533 NA other downstream 107182 17553718 ~ 17578383 (-)
AMCG00000518 NA other downstream 848962 16833759 ~ 16836603 (-)
G150729 NA other downstream 851239 16805195 ~ 16834326 (-)
AMCG00000469 LOC108413331,LOC107549545,LOC107582175,LOC108269530,LOC108423442 other downstream 2158175 15498172 ~ 15527390 (-)
AMCG00000482 NA other downstream 2206516 15461846 ~ 15479049 (-)
AMCG00000521 NA other upstream 157198 17876369 ~ 17878350 (-)
AMCG00000539 NA other upstream 287503 18006674 ~ 18009850 (-)
AMCG00000559 NA other upstream 585914 18305085 ~ 18307793 (-)
G151087 NA other upstream 692317 18411488 ~ 18412525 (-)
G151088 NA other upstream 693669 18412840 ~ 18413465 (-)

Expression


Co-expression Network