AMCG00000531


Basic Information

Item Value
gene id AMCG00000531
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 17462406 ~ 17465702 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000531
ttttaattattttaatcagtatgGGTTTTAAGTGAAGAATATAATTGTACAAAGAACCAGCTATTTtattgcacaatttaaaaagtcaaatctatgCAGATTGTttcttcaattaagtaatcaatgGCTCAGCAGGGTAGGGTctcctgcaggaccagggctgggaccCCTGACAAGATATTTATACAGGAATTAACACAATTGATACTAGAGGACAATTACTATCCAGTTATTGACTTTATTAACATGTTCATATTAACAGCTTGATTAAATGCAGAGTTTCTCTATTGGATGATTTGCTCTTGGTAAACCAGTAGCAGAGGATGGATGCTAATTAGGCTAAGCTGTTTTAATGTTCTCTGTGAACAGGATGAGAAGGTAGATGCCACATCTCATAGTGTCCGCCTGGCAACTCTGTCATCTTCTGTACGAGGACAAAACAGCTTCCTGTCGAGCTCCCTCCTCACCGAGAGCAGCTCACCTCACAAAAGACTGGCCTCTCCAGATTTTGACACCAGCAAGGAACAAGATCCGAGGTTCCTCATTAATGGTGTGGAAAGATCGGACACATAGTTAGTACTCAAAACAATTCTGCATCCACAGTTCAGAGCCACCAGTATATAGGTAGTTACTGTTCACATTACCTTCAATCTCCACTACAATGTCATGCATCATCCGGCCTCACAACACAGGCTTCAGCCCAGCAGACTCCCTGACGTGAATAAAGCACACTCCTCTCTACACTGCGCTAGTCTCTATACATGGGTTAAGTGGTTATCTTCAGAAGTGCACATacttacttttaaattaattgataatCGTTAGTTGCTTGTGCTAAATTGTTGATGGAATGGATGGAGTTTTGATCTCTCTGGATTTAAAATTAGTGGGGTTTAGTcagaaaacaattaagtgaTTATTTCAATTCCTTAGAAATGGGTGACAAGCCAGCACCACACtatgggctggtttcacagacagaTTAACATTGGGGCTTGGCCTACCCCATGTTATTTTAGGTGGGGTACAAGATCAGCACTAATCGAGGTCTGCAAAACCAGCTCCGTAAGTCCCAAATTAAGTTTGTTAAAGCATCCATTAACCATTAGACAGTGCAGGTTAAtatttgcatgtaaatgtaaaaataatatacattctAGAATGCCAGCTCATTTGACTTCTAAAGGTGAGGCAACACCCTGAGGGCTTGCCAGGCTGCTGGGCTCTTTTAACAGGCCTGGCCTCAGGGAGTAGAGTGCAGTCAGGTCTATTTTTACAGTGCTGGAGCGAAGGAAGACAGAGAACCAAACCCTACCTCCTCGTTGAGCTGAACGACGCAGTGGCAACAGACAAAACCACAAACAGGGCCAAATCGCAAATCCAAAAGAACAGTCAAAGTCTGTAAGACAAGAGTTCTTTACCTGCTTCATGCGTTCACACCCTGTCTGTTCCTGCCTTCGCCTGGCAGTCAGGTGCTTTCAGAGTATGATTCGTCCTTGCAGGGTTTCTGGGAGGTGTAGTGCTACACTCAGCACTGTGCTGCAATACAAAGAGACTGTGAGGTTTTAGTATGAAGTTCAAGTGTTTTTAAACTACTGAACACAAGTGCCTTTTTCCTACCTGCacagattacatatttttatacttGATATATATTGTGCCTGATATAGAGGAATTgtattgtgcatgttttttttatttcctgtatgAACTCATAGAAGGTCATAGTTTGTTCTAAATTTGAAGACAAATGTTTCAACATCATAcagatgttttatgttttatgtctaCTGGTGCTATAGTCCTGTAAAAGGGAGGATAGGTAATGAATTGCAATTTTATCCAGATATTAAAGCCAATAAGTTACATAGAAGCTCACCATGCGTGCACTTTATAAACATGACTTCAATATTTTGCCTACATAATTACACCTGATACAATAACCAGTAAATAAAACCACTGCATAGGATGAGACgttcactgtgaaatttggaAATTGTACAGTAAAGCCCATACATTTGCATTACGCAAACTAAAGGtccatacatttacatttcattatatttcaaCAGGGCCAAAACATCGCTCCCTTTTcgagttgtttttgttttcaaaacacacGTTCAGACTGGTCAGATGACTAAGAAGGACCCACATTTTTATGTAACAAGGTTTTTCACTGGAGCGAACCTATCCCAAATTAGGCATTTCCTCTCAAGACTCATGAGCATAATGGGCCTTTTCTAGCTTACGGGGAGAAAAAAGGCTTTTATCTGGTGctaatgcataatacatttttcaatactaAGGGTTTGTATAGGAAGGAATTCTCTAACAATTCTTATTCTTATCTTAAACTAACCAAGCTCTGTTTGGTCATCGCAAGGACTTCTTTGAGGAAGACTGAAgcacaaaactatttttttttaaataaaaaatgtgagaaattaagataaaattaaatgtctatCACATTAACTTAAATTGGCGTGCAGAGTGTGGATAAATGTTAAAACTCACCACTGGTTTCATGACATCTAAATGATAAACATGTacaataatattacagtttatatcgttattattcttattaattataACTGTGTTTCATGTGGGAAAGAATGtgtgaatacaaatgaatgcatgTGCCAAGAGACTGACTGgattgagtttattttttaatgttattcactattgtgtaaattgtactGGAGGAAGCCTGATCTAAACTTTCTACTGAATAATTCATGTAATGAATTCTGACTTTTATTTCTCCCCAACAAATGTTAAATCCAcagttatgattttttttatatgcttCAATCATGTACAGCatttccaaatgcattttttttttttaattattcatccaAAACTTGTATAAGAGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000531 True 2889 mRNA 0.38 2 17462406 17465702

Neighbor

gene id symbol gene type direction distance location
AMCG00000534 NA coding downstream 2608 17456989 ~ 17459798 (-)
AMCG00000501 snw1,LOC107681047 coding downstream 519838 16937777 ~ 16942568 (-)
AMCG00000499 NA coding downstream 526609 16927608 ~ 16935797 (-)
AMCG00000500 sptlc2,LOC107751731 coding downstream 559176 16885044 ~ 16903230 (-)
AMCG00000516 LOC108413947 coding downstream 579232 16865809 ~ 16883174 (-)
AMCG00000532 NA coding upstream 15961 17481663 ~ 17508555 (-)
AMCG00000535 gtf2a1,LOC107581504,LOC106571676,LOC107712853,LOC107721813 coding upstream 79661 17545363 ~ 17552867 (-)
AMCG00000511 NA coding upstream 131758 17597460 ~ 17600490 (-)
AMCG00000510 foxn3,LOC107680774,LOC107751738,LOC107755777,LOC107583483 coding upstream 146332 17612034 ~ 17640564 (-)
AMCG00000528 NA coding upstream 302381 17768083 ~ 17772745 (-)
G150731 NA non-coding downstream 621810 16823029 ~ 16840596 (-)
G150661 NA non-coding downstream 1229217 16232958 ~ 16233189 (-)
G150634 NA non-coding downstream 1590938 15848035 ~ 15871468 (-)
G150626 NA non-coding downstream 1704246 15756853 ~ 15758160 (-)
G150588 NA non-coding downstream 1842618 15619221 ~ 15619788 (-)
G150852 psmc1,LOC108443803,LOC108428647,LOC107581524 non-coding upstream 298888 17764590 ~ 17765401 (-)
G150853 NA non-coding upstream 300245 17765947 ~ 17766735 (-)
G150865 calm1,LOC107396020,LOC102293206,LOC102778633,LOC103380713 non-coding upstream 313526 17779228 ~ 17800956 (-)
G150965 NA non-coding upstream 633876 18099578 ~ 18100896 (-)
G151071 NA non-coding upstream 908096 18373798 ~ 18374097 (-)
AMCG00000518 NA other downstream 625803 16833759 ~ 16836603 (-)
G150729 NA other downstream 628080 16805195 ~ 16834326 (-)
AMCG00000469 LOC108413331,LOC107549545,LOC107582175,LOC108269530,LOC108423442 other downstream 1935016 15498172 ~ 15527390 (-)
AMCG00000482 NA other downstream 1983357 15461846 ~ 15479049 (-)
AMCG00000475 NA other downstream 2171151 15289303 ~ 15291255 (-)
AMCG00000533 NA other upstream 88016 17553718 ~ 17578383 (-)
AMCG00000529 NA other upstream 219863 17685565 ~ 17719171 (-)
AMCG00000521 NA other upstream 410667 17876369 ~ 17878350 (-)
AMCG00000539 NA other upstream 540972 18006674 ~ 18009850 (-)
AMCG00000559 NA other upstream 839383 18305085 ~ 18307793 (-)

Expression


Co-expression Network