AMCG00000533


Basic Information

Item Value
gene id AMCG00000533
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 17553718 ~ 17578383 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000533
AGATAATATGCTTCAAACCAAATGAAGCTgcacagaagaagaagaaaaaaacagctcagGGGAGGGTGTGTTCACGAAAACATAATGTAGAAACTTTTAAACACCCAGTAAAAGCCAAATTTGAAGCCTGGCTTACATCAGAGTAGGAGTGCCACTACATGGACACCGAAGGAAGTGAATCCTAAACCGGGACGCCTCCTGCAGCGCAGCATTGACTTTGGAAAGCAATGATTCAAGTTAAGGCACAATGACAGCCGTGGGTACAACGGGACAGGCCACACAGCGGTCTGACTGGGTCTCCTTCGCTGACGAGCCTCCTCTTCATTCCCTGCTAACCAAGAAAGATGGTGACCTCGGCCTGCATCAGCGTGCCCTGGACGCCTCCTTCCCGTCGCCTGTTCCCGGGACAGTAATGCCAGCCCCCGAGCCTCCTACCCCTCAGAGCACCTGGGTCCAGTTTGATGACCAGCCGTGGACCAGCGCACTTCCCGTCCAGCCACAGGTAACAGGCTCCTCGGGAGGAGGCGTGCCGCGCAATCGCTGCTCCCAGGCCAGTTTTTGGAGCCACGCCCCTCCCTCGGACGGCAGCTGGACCTCGCACTCCGAGGACCCCAGCTCTCTGAGCGTGGCGGCGTCCTTCCCGGACCTGCAGTCTCTCCACACCGAGGACCAGCACAGCCAGGAGGCGTCCCGGGCCCACTCCCCAAACTCTTCTGTCTTCCAAGAAGATGAGGATATAGACATGGACGCTGGAAGCTGGCACTCAACCACTAAACAAATGAATGGTCAAGCGGAAAAATCGAAGTCCCCCCGCTTCGCCAGCTGGGTCACCTTCGATGATGATGAAGATTCCAGCTTGCATTTCCCTGGGAAACCATTGCCTTTCAGTGTGCCAAACCCGGATCCCAACAGGAATTTTATCATGCCTGAAGGACAAGGCCAGGAGACAGAGGTCACAAGAAACCTTTTGGATTTGACACCAGAAAAGACCAATCCTGCCTTTACCCTGGACAGCCCTCTGTTGAAAAGCAGTACTCCAAGCGGCAAGAAAAACCCATTCTTGGATGATGAGCTGTTGGATATTCAACCCTCCCCCATCAACCCATTCAGTGCCTATTTTGATAAGCAGGACCACCAGTTCGATCAGACACCCCAGAGCAATGGGTCATGTTCAAAAAGCccccatttattttcattcagctCTCCATTTTTCAATGACAGCGTCGATGCAAAAAGGGACTCCATCTTACTGTTCCACCCTGTGTTTGACACCAGCAGTAGTGAGGATAAGATTCAAAATGCTCCTCAGGATGAAACTCTGGGACAGTTTAAGCAGTTACACATTGCTGACCCGGATCAACTGGGTAGTCCCACCTCTCCTGAGGACCTTGTTGATCATGAGGAATTAGACGATCCCCCTTTTCATCCTTCCCACATGGAAGCCAAAGATGGCTGGCCACTGATGTTGAGGAtacctgaaaagaaaaacataatgtcTTCTCGACACTGGGGGCCCATCTTTGTGAAGGTTACGGACACTGGTTGCTTACAGCTCTTCTATGAGAAGGGGCTGGAGAAACCTTTTAAGGAATTTCAGTTGGATGGCAGTCACGAACTCTCGGGACCCAAGCTGCAGAATTACGATGAAAACGGGAGAGTTCACACGATAAGCATAGACCACGTAACCTacaaagaaaagaggaaaatcCAGCCAAAGGTGGCGGTAGTTCACACTCCCGTAAAGGAGCAGCTGGTGAAGCTCGGCACCACGAGTTACGAGGATTTCCTCAGCTTTGTCTGGGTGGTTCAAGATAAGCTGATGCACCTGCCCGTGGAAAGTGACACATTCTCCTACACTACAGCTTATGCTGAGGAAGAAATATTAGTTGAAGTGAGGGACGAGTTTCACGGAGTCGTCTCTAAGGGTGACAACAGGATAATGCAGCAATTGGTGGTGACCCATGTCAACATCTTGGGCTTTGTTTCCAGTTCACCGTTATGCAGGATCGGTTTCAATGATATCCAGGTCAAAGGCAATGAAATCGTGTCCAGGCATGACATCATCCCTAACAGCACCACGAGGTGGATTAAGCTCAGAGACTGCAAGTTCCACAAGTGTGTGGATGAGACGGAATTTGCCAATTCGAGGGTGATCGCCTTTACCCCTCCTGCCGGGCGCAAGGTTGAGCTGATGCATTTCAGGACGGCCTTTGCCGAGAAAACCCTCCCATTCACGCTGAAGACCATCACCACCATCAAGGGCGCGGAGGTGGAGCTGCAGTCTTGGCTGGTGATGTCATCAGGGTTTTCATCCAATCGCGACCCCTTGACTCTGATTCCGTGTGAGAATGTCATGATCCGCTACCCGGTCCCCTTGACGTGGGTGAAAAACTTTCGCCGGGACAGTGTCATGGGGGAGAAGTCGCTGAAAGCAAGAATCAATAAAGGGGCCAGTTTTGGTTCCACCAGTGTTTCAGGATCCGAACCCGTGATGAGAGTCACTTTGGGGACTGCCAAATACGAACATGCCTTCAAGGCTGTGGTGTGGAGGATAAACAGACTCCCAGACAAGAATTCAGCGTCGGGCCACCCTCACACCTTCTTCTGCCACCTGGAGCTGGGCTCCGACCGCGAGGTGCCCCCCACGTTCTCCCGGCACTTGGACATCGAGTTCGACATGCCGGCCGCCTCCGCTTCCAAAGCCACCGTGCGCTCCCTCTCGGTGGAGGACAAAGCGGACATCAAGAAATGGGTCACCTACAAGTCACACTACACTTACCAGGTCGAAATGGATCAGAAACAAGATCCGGTTCAGCACACGAACGGCCAACAGACGGAGGAACCGAACGAGTGTCCGCAGCAGTGAAAACCGGAGAACATATTTATTCACAGGGAGGAGAAACTGCACTTTGGGGAGTTTAGTTAACACTGTTTCATTACTGTACTCAGCTGGAGTTTGGAAGATTAGAAATGTGCTTTATATgatccttttttaaaaatagacaatgACCAGAGTAACCTTAATGGCCACtttttttgaaagaaatgtagTAACTTATTAGCTGTACAATTCGATTGCCTAATTTAACAAAATTCAACACAGTGAGTGTCAAATTAAGCTTGTTGAAGGATGCCATAGGGTGACGCTCAGACGAACACTTGGGAGGTGTGCATTGTATGTAGTGAAAAGTAATGGATGAACTActtaagtttatatatatatatatatatatatatatatatatatatatatattaagcagTTGAAGACATGCACAGAAGACATTTACAGAAGTGCTTTctacagcaaattaaatggttttgtttggtCTGATTCTGTATGACTCAAGTGAATCACATAGACCTCGACTTTAAAGCGTAGATTCAGGGTAAGTTTAACAAATCATGAACTTGAATAGCAGGTTGTCTCATTCTGAACAACAAGAGAGACACAAAAGGTGCCTTCAGAACCATTCTAATACTTTAACTAGCTTTACAGACACAAGCAGAGCCTTCTGACTATAAGATGCCATTAACTCTAGCTTTTATCTGAGCTCTCTGTGAAAGACAACGTGTGGAAATGACACACTTAGCAGGTGTAGGATAAGGGGAAAGGAATatatgttttgattgtttatctGTGCTAATTTAATATAATCACATATTCTTATTCATTCTGATAACGTGCTTCTGTTATAAACATGCATGACACCATTTACAGTCCTagaaacattttcttgtgtgtttttcaatataGTTTCTCAATCATCATGTACAATACTTGGAATCAGTctctttttcacagttttttaaacatttctcttTCAGTATCCAATCAGACATTACTCATGTTGTGAAATGACTTGTTTTTATAGCTTATATGTCAGGACTTAAATTATAGACTAGACTATAGACTGAATGTTTAATGTCAGATTGGGGACAAATCACAAATTGTTCAagcaaaaaaaccaaaacatatttaagtGCTTAGTTATTTAACAGTTACATGTTATTACTGCAAAACTACCTTTTTGTCTTATTGTTTACATGAATCCGAAATTTAAGTTAACATTCCCTTCATTACCTCGATCACATAGAACTTAGTTTATGGgagattttaataaattatgaatatgtCATACTACAGGAGGTTACATCACGAGGGAATTTTCTAATATTGtgcaaaaattaaaacataggCTGGTTTAAAAAGACGAAAAGGTGTGAGTacagaataacagaataaaaatactgtaaGAATATCTGTTAGTAtagatttcctttttgtttctgcaCTACCTGTTGATTTCAGATGTCAGTTCTTCAGTACTGCACTGCAAGTCAGAAAATCGTATAATAACATCtgaaaagggaagaaaacaatCTGGCAGTTTCTGTGCAGTGTTACTCTTCTCACCTACTGAGAGATGTGTGTATAGAGGGAGAACAGAAAGTTATCTGCTGAgtttcagagaagaaaacaaatgtggagGTAAAAAGAAGACACCAAGAATAGccaatgttttccattttgaggGACTGATTTTAATGTAGCAAGCAACAGACAGTGAGCCAGTTTCACTCTGCTAGATTGGAGATGTTTATGTGGCTTATAAATGTCTCATAACATTCATAACGTGGTGCCTTCTTGATAAACAGAATTACGAGAGCAACTGTATTAGGTGTGTTTAAGTTTCTCagattgaaattgttttaaaatgttttaatccaagTATTTCACAGTGCTCTTTAAGGCAATTTTTTATGCTTCAACTTTAATTTAGATAAAATCAACGTATTAGGATTTTAATCCtctcaattatttttatagGTGCTTTGGGCATATCCTATGCTTAGTAAACTACTAACAGGGCCAGTGTgcataaaaagagaaaatgtacaaCACTCTTAGAAAACTGTAAGTAAAAATGCCAAGGATACTATATCTGagctattattttaaatgtaggtCTTCAGAACACATCATTAAACCAAGATTGTAGAACTCATTGcactataaatgttttattcttgtcTTTGCTTTTaagataaacaaattaatagatCAGTACAAGACTTTGACCTTTTATCAAAGTGATTTGAATTGTAGGAATCATATCTTGACTACATCCAAGAAATCCAGAAATACGTTCAAGAAGCTTAAcgattttatataaaatagcTAACCAATGTAAGAATTTAGAATAAGTCTGACGTAAGCTGATTCTACACCACAGCAAAGGTACTTTACAATTCATCTATATATCTAGGTCTTATCAAGTTTACAAATAGGTGTAGATATCATCTTGCCATTTTCTCAATCCCTTCACTGAAAGCTTTAAGTGGATCGCTAGTGTACTGTTTCCAAAGGCTAAAATGCTTTGCATAGGAAAGCATAGGCCAAGTGGTTCCCAACAGAACTTCAGCTATTTTTGATCTACTCAGAAAGCTCAAGTGAATTGGAAAAGGAGCGTTAGATAGGCACTGAGTTGTTTCCccattctgtgtatttttagcatttgacttttaaaaacacaatagagACAAATCATTTAATAGGTATACAGCAAATGAGTGTAAAGTACAAGTATCTTGCAAGACTCCAGGTCCTGACAGTGACAGATTTTAGCTTTTGTGCATTAATACGAAACCATGAAAAGGGACTTCCCTGTCCATGCTGTAAAATGATTTGTTGGCCTTAAATGAAGGGATCAGTACTGTAATAGTTTAAAAAGACTCAtgcatttgactgtttttatCCTTTAAAACTATACAATATGCTTTATATGTCAGTCTCTGCAGACCACACCTATTTTAATCACCTGCCAAAAGAACTGCCactgtttttgtattcaaaacACTAGTTTTAGAGGCTCActcaaacagtattttttttttaaatggcggTAGGGGTTAAAATGTACACTAAAAGGCCATTTACTATTTTGTACTGGTGCAAGTAGGTTGGGATGCCATGCTTGTCGCCTGGGAGTACTGGATTTTGCATTGTTTACTTGCATTCTCTCAGCCTTCAAACAATTCagctaatttagttttttttctatatcagctgttgaattaaattattgtgcACTTGTTTACAGTGAAACTGGAATGAACATGCATGTAGAatgtgtactttaaaaaaatcctgCTGTTGCTTCTTTTGTACATCGAAGATGAAATAAAGTTGTTGCTTTAGTTTCATATGCTTTGTGTTAGCGCTGTttattgtgtatctgtttttt
>TU189814
catttaatttacagTTGAAGACATGCACAGAAGACATTTACAGAAGTGCTTTctacagcaaattaaatggttttgtttggtCTGATTCTGTATGACTCAAGTGAATCACATAGACCTCGACTTTAAAGCGTAGATTCAGGGTAAGTTTAACAAATCATGAACTTGAATAGCAGGTTGTCTCATTCTGAACAACAAGAGAGACACAAAAGGTGCCTTCAGAACCATTCTAATACTTTAACTAGCTTTACAGACACAAGCAGAGCCTTCTGACTATAAGATGCCATTAACTCTAGCTTTTATCTGAGCTCTCTGTGAAAGACAACGTGTGGAAATGACACACTTAGCAGGTGTAGGATAAGGGGAAAGGAATatatgttttgattgtttatctGTGCTAATTTAATATAATCACATATTCTTATTCATTCTGATAACGTGCTTCTGTTATAAACATGCATGACACCATTTACAGTCCTagaaacattttcttgtgtgtttttcaatataGTTTCTCAATCATCATGTACAATACTTGGAATCAGTctctttttcacagttttttaaacatttctcttTCAGTATCCAATCAGACATTACTCATGTTGTGAAATGACTTGTTTTTATAGCTTATATGTCAGGACTTAAATTATAGACTAGACTATAGACTGAATGTTTAATGTCAGATTGGGGACAAATCACAAATTGTTCAagcaaaaaaaccaaaacatatttaagtGCTTAGTTATTTAACAGTTACATGTTATTACTGCAAAACTACCTTTTTGTCTTATTGTTTACATGAATCCGAAATTTAAGTTAACATTCCCTTCATTACCTCGATCACATAGAACTTAGTTTATGGgagattttaataaattatgaatatgtCATACTACAGGAGGTTACATCACGAGGGAATTTTCTAATATTGtgcaaaaattaaaacataggCTGGTTTAAAAAGACGAAAAGGTGTGAGTacagaataacagaataaaaatactgtaaGAATATCTGTTAGTAtagatttcctttttgtttctgcaCTACCTGTTGATTTCAGATGTCAGTTCTTCAGTACTGCACTGCAAGTCAGAAAATCGTATAATAACATCtgaaaagggaagaaaacaatCTGGCAGTTTCTGTGCAGTGTTACTCTTCTCACCTACTGAGAGATGTGTGTATAGAGGGAGAACAGAAAGTTATCTGCTGAgtttcagagaagaaaacaaatgtggagGTAAAAAGAAGACACCAAGAATAGccaatgttttccattttgaggGACTGATTTTAATGTAGCAAGCAACAGACAGTGAGCCAGTTTCACTCTGCTAGATTGGAGATGTTTATGTGGCTTATAAATGTCTCATAACATTCATAACGTGGTGCCTTCTTGATAAACAGAATTACGAGAGCAACTGTATTAGGTGTGTTTAAGTTTCTCagattgaaattgttttaaaatgttttaatccaagTATTTCACAGTGCTCTTTAAGGCAATTTTTTATGCTTCAACTTTAATTTAGATAAAATCAACGTATTAGGATTTTAATCCtctcaattatttttatagGTGCTTTGGGCATATCCTATGCTTAGTAAACTACTAACAGGGCCAGTGTgcataaaaagagaaaatgtacaaCACTCTTAGAAAACTGTAAGTAAAAATGCCAAGGATACTATATCTGagctattattttaaatgtaggtCTTCAGAACACATCATTAAACCAAGATTGTAGAACTCATTGcactataaatgttttattcttgtcTTTGCTTTTaagataaacaaattaatagatCAGTACAAGACTTTGACCTTTTATCAAAGTGATTTGAATTGTAGGAATCATATCTTGACTACATCCAAGAAATCCAGAAATACGTTCAAGAAGCTTAAcgattttatataaaatagcTAACCAATGTAAGAATTTAGAATAAGTCTGACGTAAGCTGATTCTACACCACAGCAAAGGTACTTTACAATTCATCTATATATCTAGGTCTTATCAAGTTTACAAATAGGTGTAGATATCATCTTGCCATTTTCTCAATCCCTTCACTGAAAGCTTTAAGTGGATCGCTAGTGTACTGTTTCCAAAGGCTAAAATGCTTTGCATAGGAAAGCATAGGCCAAGTGGTTCCCAACAGAACTTCAGCTATTTTTGATCTACTCAGAAAGCTCAAGTGAATTGGAAAAGGAGCGTTAGATAGGCACTGAGTTGTTTCCccattctgtgtatttttagcatttgacttttaaaaacacaatagagACAAATCATTTAATAGGTATACAGCAAATGAGTGTAAAGTACAAGTATCTTGCAAGACTCCAGGTCCTGACAGTGACAGATTTTAGCTTTTGTGCATTAATACGAAACCATGAAAAGGGACTTCCCTGTCCATGCTGTAAAATGATTTGTTGGCCTTAAATGAAGGGATCAGTACTGTAATAGTTTAAAAAGACTCAtgcatttgactgtttttatCCTTTAAAACTATACAATATGCTTTATATGTCAGTCTCTGCAGACCACACCTATTTTAATCACCTGCCAAAAGAACTGCCactgtttttgtattcaaaacACTAGTTTTAGAGGCTCActcaaacagtattttttttttaaatggcggTAGGGGTTAAAATGTACACTAAAAGGCCATTTACTATTTTGTACTGGTGCAAGTAGGTTGGGATGCCATGCTTGTCGCCTGGGAGTACTGGATTTTGCATTGTTTACTTGCATTCTCTCAGCCTTCAAACAATTCagctaatttagttttttttctatatcagctgttgaattaaattattgtgcACTTGTTTACAGTGAAACTGGAATGAACATGCATGTAGAatgtgtactttaaaaaaatcctgCTGTTGCTTCTTTTGTACATCGAAGATGAAATAAAGTTGTTGCTTTAGTTTCATATGCTTTGTGTTAGCGCTGTttattgtgtatctgttttttcccccaccaTGTTTAACAATGAAGTGCAGTAAATA

Function

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process

KEGG:

id description
K20067 STON1_2; stonin-1/2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000533 True 6247 mRNA 0.42 7 17553753 17578383
TU189814 False 3034 lncRNA 0.34 2 17553718 17574839

Neighbor

gene id symbol gene type direction distance location
AMCG00000535 gtf2a1,LOC107581504,LOC106571676,LOC107712853,LOC107721813 coding downstream 851 17545363 ~ 17552867 (-)
AMCG00000532 NA coding downstream 45163 17481663 ~ 17508555 (-)
AMCG00000531 NA coding downstream 88016 17462406 ~ 17465702 (-)
AMCG00000534 NA coding downstream 93920 17456989 ~ 17459798 (-)
AMCG00000501 snw1,LOC107681047 coding downstream 611150 16937777 ~ 16942568 (-)
AMCG00000511 NA coding upstream 19077 17597460 ~ 17600490 (-)
AMCG00000510 foxn3,LOC107680774,LOC107751738,LOC107755777,LOC107583483 coding upstream 33651 17612034 ~ 17640564 (-)
AMCG00000528 NA coding upstream 189700 17768083 ~ 17772745 (-)
AMCG00000523 NA coding upstream 195417 17773800 ~ 17789068 (-)
AMCG00000524 ttc7b,LOC106601235,LOC107654850 coding upstream 242388 17820771 ~ 17865282 (-)
G150731 NA non-coding downstream 713122 16823029 ~ 16840596 (-)
G150661 NA non-coding downstream 1320529 16232958 ~ 16233189 (-)
G150634 NA non-coding downstream 1682250 15848035 ~ 15871468 (-)
G150626 NA non-coding downstream 1795558 15756853 ~ 15758160 (-)
G150588 NA non-coding downstream 1933930 15619221 ~ 15619788 (-)
G150852 psmc1,LOC108443803,LOC108428647,LOC107581524 non-coding upstream 186207 17764590 ~ 17765401 (-)
G150853 NA non-coding upstream 187564 17765947 ~ 17766735 (-)
G150865 calm1,LOC107396020,LOC102293206,LOC102778633,LOC103380713 non-coding upstream 200845 17779228 ~ 17800956 (-)
G150965 NA non-coding upstream 521195 18099578 ~ 18100896 (-)
G151071 NA non-coding upstream 795415 18373798 ~ 18374097 (-)
AMCG00000518 NA other downstream 717115 16833759 ~ 16836603 (-)
G150729 NA other downstream 719392 16805195 ~ 16834326 (-)
AMCG00000469 LOC108413331,LOC107549545,LOC107582175,LOC108269530,LOC108423442 other downstream 2026328 15498172 ~ 15527390 (-)
AMCG00000482 NA other downstream 2074669 15461846 ~ 15479049 (-)
AMCG00000475 NA other downstream 2262463 15289303 ~ 15291255 (-)
AMCG00000529 NA other upstream 107182 17685565 ~ 17719171 (-)
AMCG00000521 NA other upstream 297986 17876369 ~ 17878350 (-)
AMCG00000539 NA other upstream 428291 18006674 ~ 18009850 (-)
AMCG00000559 NA other upstream 726702 18305085 ~ 18307793 (-)
G151087 NA other upstream 833105 18411488 ~ 18412525 (-)

Expression


Co-expression Network