AMCG00000539


Basic Information

Item Value
gene id AMCG00000539
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 18006674 ~ 18009850 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000539
ATGACCCCAGGTGTTGGGAAGGACTTCGAGAACGTCGAACTGGGCGAGATGGGCAAGAAGAAGGAGCAGAAGGTGCCCCGCAGGGTCATTCACTTCGCCAGTGGGGAGACCATGGAGGAGTACAGCActgatgaagaggaggaggagatacCCGAGAAGAAAGACCTACTCCCCACGGTAGATCCATCCAAGCTGACCTGGGGACCATACTTCTGGTTTCACATGTGGAGAGTTGCCACCTCAACTATATCGGTGTGTGACTATATGGGAGAGAAGATGGCATCGCTCTTTGGCATCACCTCACCGAAATACCAATATGCCATCGACGAATACTACCGGGTGAAGAAGGAGgaggaggaggaggaggtggagaacCGCATGTCCGAGGAGGCGGAGCGGCGTTTCGAGGAGCAGCAGAACCCGCAGGGCCAGGAGCCACACACGGAGCAGCCAGAGCCGTCGGCGTCCTTCGTAAACGTCACCTTTGAGCTGGAGAAGGAGCCCCACGTGATTTCGGAAAGCAACAGAGTGACGGCTCCCATTCCCACTTAA
>TU189969
TCCTGGTTCGCCCTGAAGAAAAGCAACACAGCCCTACATCATAGACGTGCAGGGAAAGGGAGATGGCACAGTTGTCGTTGTATCTCACGAACATAAACGTGTCTTTGGGACAGAATATGGACATGGAAAAGACCCCAGGTGTTGGGAAGGACTTCGAGAACGTCGAACTGGGCGAGATGGGCAAGAAGAAGGAGCAGAAGGTGCCCCGCAGGGTCATTCACTTCGCCAGTGGGGAGACCATGGAGGAGTACAGCActgatgaagaggaggaggagatacCCGAGAAGAAAGACCTACTCCCCACGTCCAAGCTGACCTGGGGACCATACTTCTGGTTTCACATGTGGAGAGTTGCCACCTCAACTATATCGGTGTGTGACTATATGGGAGAGAAGATGGCATCGCTCTTTGGCATCACCTCACCGAAATACCAATATGCCATCGACGAATACTACCGGGTGAAGAAGGAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000539 True 552 mRNA 0.56 5 18006674 18009066
TU189969 False 471 TUCP 0.52 4 18007096 18009850

Neighbor

gene id symbol gene type direction distance location
AMCG00000538 NA coding downstream 8079 17976631 ~ 17998595 (-)
AMCG00000540 psma6b,LOC107664826,LOC103149670,LOC106935624,LOC107597861,LOC102217550 coding downstream 32761 17968032 ~ 17973913 (-)
AMCG00000544 NA coding downstream 63504 17941557 ~ 17943170 (-)
AMCG00000522 brms1la,brms1l,LOC107682295,LOC107693096 coding downstream 133246 17867427 ~ 17873428 (-)
AMCG00000524 ttc7b,LOC106601235,LOC107654850 coding downstream 141392 17820771 ~ 17865282 (-)
AMCG00000541 NA coding upstream 23227 18033077 ~ 18043323 (-)
AMCG00000548 ckbb,ckb,LOC105897779,LOC105020468 coding upstream 141964 18151814 ~ 18160920 (-)
AMCG00000567 bag5 coding upstream 185635 18195485 ~ 18196999 (-)
AMCG00000564 NA coding upstream 227991 18237841 ~ 18244172 (-)
AMCG00000565 NA coding upstream 244450 18254300 ~ 18275467 (-)
G150865 calm1,LOC107396020,LOC102293206,LOC102778633,LOC103380713 non-coding downstream 205718 17779228 ~ 17800956 (-)
G150853 NA non-coding downstream 239939 17765947 ~ 17766735 (-)
G150852 psmc1,LOC108443803,LOC108428647,LOC107581524 non-coding downstream 241273 17764590 ~ 17765401 (-)
G150731 NA non-coding downstream 1166078 16823029 ~ 16840596 (-)
G150661 NA non-coding downstream 1773485 16232958 ~ 16233189 (-)
G150965 NA non-coding upstream 89728 18099578 ~ 18100896 (-)
G151071 NA non-coding upstream 363948 18373798 ~ 18374097 (-)
G151119 NA non-coding upstream 427433 18437283 ~ 18453200 (-)
G151122 NA non-coding upstream 439694 18449544 ~ 18522790 (-)
G151133 NA non-coding upstream 484799 18494649 ~ 18565715 (-)
AMCG00000521 NA other downstream 128324 17876369 ~ 17878350 (-)
AMCG00000529 NA other downstream 287503 17685565 ~ 17719171 (-)
AMCG00000533 NA other downstream 428291 17553718 ~ 17578383 (-)
AMCG00000518 NA other downstream 1170071 16833759 ~ 16836603 (-)
G150729 NA other downstream 1172348 16805195 ~ 16834326 (-)
AMCG00000559 NA other upstream 295235 18305085 ~ 18307793 (-)
G151087 NA other upstream 401638 18411488 ~ 18412525 (-)
G151088 NA other upstream 402990 18412840 ~ 18413465 (-)
G151089 NA other upstream 404205 18414055 ~ 18414558 (-)
G151090 NA other upstream 405672 18415522 ~ 18415841 (-)

Expression


Co-expression Network