AMCG00000565


Basic Information

Item Value
gene id AMCG00000565
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 18254300 ~ 18275467 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000565
ATGCGTTTTCCCGTCGGCGGGGAGGGGAATGGAGCTGTAGCCGGCACGATGGAGTGGAAACACGTGGAAGCCGTGCAGGAGTTCAGCGCCGAAGGACAATGCAGTAAGATTAAGGTCCGATCTTGCCGGATAACCTGGGAGGACGCGCAGCAGgttGGCAACCCGCGGGTGGAGCTGACCCTGTCGGAGCTGCAGGACATGGCCAgtcggcagcagcagcagatcgAAGCCCAGCAGCAGATGCTCGTGGCCAAGCAGGAGCGCCGGCAGCAGCAGAGCGTGTCCGAGACGGAGAAACTGCAGCGGCTCAAGGACCGGGTGGACAGCCAGGAGGCCAAGCTGAAGAAGATCAGGGCCATGCGCGGCCAGGTGGACTACAGCAAGGTCATCAACGGCAATCTGTCCGCGGAGATCGAGCACATCAACAGCATGTTCCAGGAGAAGCAGGAGGAGCTGCAGTCGGCCGTGCTGAAGGTGGAGCAGCTGACGCAGCAGCTGGAGGACCTGCGCCGCGGGAAGCTGAACGGCCTGCAGGCGCTGAGCGGCCAGGTGACCGGGGCGGCGGCGCTGGAGCTGCGCAAACTCTACCAGGAGCTGCAGATCCGTAACAAGCTGAACCAGGAGCAGAACAGCAAGCTGCAGCAGCACAAGGACCAGCTGAACAAGCGCAACATGGAGGTGACGCTGATGGACCGGCGCATCGGGGAGCTGCGCCAGCGCCTCTACAAGAAGAAAGCTGAGGCACGTCACAAAGAGAACATCCCCCTGAACAGGATCAACGGGACACCCTCCCCCCAGCCGGCGCCGGGCAGCTCGGGCCGCGTGGCCGCCGTGGTGCCCTTCAGCCAGGCCCCCGCGCCGGGCAGGCAGGAAGGGGGCGGCTACCCCGGCCAGGCGGACACTCTGAAGCCACAGTCCCTCACGGTGACGGCCACCGCCAGCCACGCCCGCTCCAAATCCGAGACAGATGGGCGAGCCGTGAGAAAGCCCCCCGGCCCTTGGAAGGTCTCTGATTTAGACATCGTAGTGGACCCGGTGCTGCCGTCTCCCCCCGCCGCTCAACAGCCGTCCGACATCAGGCTCGGACACCTGGCCCCCCCGCTGCCTGACGCTCTTTCCTCCGGCGATGCCAACTGGCCGGCCCTCAGTAAGCAGGTGTCGGCCACCCTGAAGCCGCCCAGCGTGGACTGGAAGGAGTCCAGCATGGACACGGCGCCCAAGCCCGGCAGTCCCGCCTCGGGCCCCGACAAGGCGCTGTGCAAGCCGCTGCCCCCGAGCTACGGCACCTACCCCAGCGCCGGGCTGCTGGCGGCCGGGTCCTGCTCCTCGCTGGAGCGCCGCAGGGATGGCAGTCTGACGCGGACGGGGGGCTGGCAGAGGGCGGCGCAGCCCCCCGGCTCCTCCCAGCAGATCCAGCAGCGCATCTCCGTCCCCCCCAGCCCCACCTTCCAGCCTGCCGGCTCCCCGCTGTTCCCCCCGGGCGAGCCGCGGCCCGACCCCCCCCTGGCCGTGGCGGTGCGGCCCTTTGTCCCTGACAAGGGCTCCCGGCCGCAGTCCCCCCGCAAGGGACCGCCGACCGTCAACTCCAGCTCCATTTACTACATGTACCTGCAGCAGGCCGTGCCGCCCAAGACCTACCAGCCCAACAGCAAGTCAGCTGTCAAAGCAGTGTACGGGAAGCCGGTGCTGCCCCCCAGCTCGGCCCCCCCCTCGCCGCTGCCCTTCCTACCAGGGGCTCCGTTGCCGTTGGGGGTGGAGGAGGGCATGGAGAGGGACGGCCCTCGGGAGGGGGAGCAGGAGGGCCCGTGCGTGCCGGGGGAGGGCCCGCCCCCCAGCGTGGAGAACATCCCGCGGCCCCTGAGCCCCACCAAGCTGACGCCCATGGTGCACTCGCCCCTGCGCTACCAGAGCGACGCCGACCTGGAGGCGCTGCGCAAGAAGCTGGCCAACGCGCCGCGGCCCCTGAAGAAGCGCAGCTCCATCACGGAGCCCGAGGGCCCCAGCGGCCCCAACATCCAGAAGCTGCTGTACCAGCGCTTCAACACGCTGGCAGGGGGCATGGAGAACGGCGGTGGCggaggggggggcagtggcCTGCCCTTCTACCAGCCCGGGCCCCCCCCCGACTACATGGGCGGCGTCCTGGCTGACATGGACAACGCCAACCTGCCCGAGCCTCCCAGCcaggccccgccccctcccGCCACGGAGCCGGCCGAGCCCCTCCAGCTGTCGTTGCTGCCCCCCCCCTCGGACGCCAACGACAACCAGCTGCCGCCCCCTCCCCCCGAGGAGCCGACGCCGGGGCTGTCCATCCTGCCGGCCGCCGCCACCGAGGACAGCAACAACAACCCCGCCGCCCCCCCGCCCGGCGACTCACTGCCCAGCCCCATCCCCGAGGCCAGCTCCCCCGAGGAGGCCGGCACACCCCCCCCGCCCGCCGCGCCCGGCCCCCTGGCCACGGCCACGGCCAAGCGCACCAACCTGAAGAAGCCGAACTCGGAGCGCACCGGCCACGGGCTGCGGGTCAAATTCAACCCCCTGGCGCTGCTGCTGGACGCCTCCCTGGAGGGCGAGTTCGACCTGTCGCTGTGCTCTTCCCAGGTGGAGAACCCCAGCACCCCGAACGACGAGGGCATCACCCCGCTGCACAACGCCGTGTGTGCCGGACACCACCACATCGTGCGCTTCCTGCTGGACTTCGGCGTCAACGTCAACGCAGCTGACAGCGATGGCTGGACCCCCCTGCACTGCGCCGCCTCCTGCAACAGTGTGCATCTGTGCAAGCTGCTCGTGGAGTCGGGCGCCGCCATCTTCGCCACAACCATCAGCGACGTGGAGACGGCAGCGGACAACTCCTCCTTCAGCCTGGTCAGCTGTGTCCTCAGGCTGTCCTACTGCCGCCCTGCCCTTGGACAGCAGCCCGGCGATGGCCAcccgctctccctctccagccGCTGGGCGAGGCCGGCCTTCCGGGACTCGGCGAACTCCAACTCCAGCAGGGCCTGTTTCTCCCGGAGGGGCGTGCAGGAGAAGCTGGGCGTGATGAACAAGGGCGCCGTGTTCGCGCTGTGGGAGTACGAGGCTCAGAACAGCGACGAGCTCTCCTTCCACCAGGGCGACGCCATCACCGTGCTGCGGCGCAAGGACGACAGCGAGACGGAGTGGTGGTGGGGCCGGCTGAACGAGCGTGAGGGCTACGTGCCCCGCAACCTGCTGGGGCCGTGCCGCGACCCGCCGAACATGGCGCGGGCGGGCAGGCGGCGGCCGGAGAGGAGCCGCTGCACCGAAGACTTACCCGAGCGGCTGTTCCTGTGTAGCGGACAGATACACCACTATGTAAACGTGCACAATAAAAGTCTGCCATGGCGCGAG

Function

GO: NA

KEGG:

id description
K17554 PPP1R13B, ASPP1; apoptosis-stimulating of p53 protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000565 True 3378 mRNA 0.69 16 18254300 18275467

Neighbor

gene id symbol gene type direction distance location
AMCG00000564 NA coding downstream 10128 18237841 ~ 18244172 (-)
AMCG00000567 bag5 coding downstream 57301 18195485 ~ 18196999 (-)
AMCG00000548 ckbb,ckb,LOC105897779,LOC105020468 coding downstream 93380 18151814 ~ 18160920 (-)
AMCG00000541 NA coding downstream 210977 18033077 ~ 18043323 (-)
AMCG00000538 NA coding downstream 255705 17976631 ~ 17998595 (-)
AMCG00000566 ppp1r13b coding upstream 7870 18283337 ~ 18286335 (-)
AMCG00000558 NA coding upstream 35588 18311055 ~ 18313775 (-)
AMCG00000557 rtn1a,rtn1b,LOC108257846,LOC108434986 coding upstream 61464 18336931 ~ 18347984 (-)
AMCG00000556 NA coding upstream 81707 18357174 ~ 18361886 (-)
AMCG00000560 NA coding upstream 104321 18379788 ~ 18389668 (-)
G150965 NA non-coding downstream 153404 18099578 ~ 18100896 (-)
G150865 calm1,LOC107396020,LOC102293206,LOC102778633,LOC103380713 non-coding downstream 453344 17779228 ~ 17800956 (-)
G150853 NA non-coding downstream 487565 17765947 ~ 17766735 (-)
G150852 psmc1,LOC108443803,LOC108428647,LOC107581524 non-coding downstream 488899 17764590 ~ 17765401 (-)
G150731 NA non-coding downstream 1413704 16823029 ~ 16840596 (-)
G151071 NA non-coding upstream 98331 18373798 ~ 18374097 (-)
G151119 NA non-coding upstream 161816 18437283 ~ 18453200 (-)
G151122 NA non-coding upstream 174077 18449544 ~ 18522790 (-)
G151133 NA non-coding upstream 219182 18494649 ~ 18565715 (-)
G151150 NA non-coding upstream 307941 18583408 ~ 18584113 (-)
AMCG00000539 NA other downstream 244450 18006674 ~ 18009850 (-)
AMCG00000521 NA other downstream 375950 17876369 ~ 17878350 (-)
AMCG00000529 NA other downstream 535129 17685565 ~ 17719171 (-)
AMCG00000533 NA other downstream 675917 17553718 ~ 17578383 (-)
AMCG00000518 NA other downstream 1417697 16833759 ~ 16836603 (-)
AMCG00000559 NA other upstream 29618 18305085 ~ 18307793 (-)
G151087 NA other upstream 136021 18411488 ~ 18412525 (-)
G151088 NA other upstream 137373 18412840 ~ 18413465 (-)
G151089 NA other upstream 138588 18414055 ~ 18414558 (-)
G151090 NA other upstream 140055 18415522 ~ 18415841 (-)

Expression


Co-expression Network