AMCG00000607


Basic Information

Item Value
gene id AMCG00000607
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 19378217 ~ 19382131 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000607
ATGATTTGAGGTGGATTTGGAGTTTCGGTGACTAAGGATGTGTTGTAGTTCTCGTTATCGTTGTGGTTTTAATATACatgcacttatatatatatatatctatataaattcACTTTACTAGGGTAaactatattaaacaaaacGCTTATCCGCACCCTGTGTGGACCTTGCACATTAACCACTTCTTCAGAGGAGCACGCTTTGGACTCGGACATCATGCGTGTTGTTTCCATCTATGTTGGTTTTGGATGCATGTAGTGAACGTCTACAAACATGGATTTTGCAAGTGCAAAAAGTGCGCTTGTCGGTGTGTTGAGCAGCGTCAAACCCAGCGAGGTCCCGCAGCTGCTGGACTGGATGCGAAACTCCGAGGAGCTGGACGATTACTGCTTTGACAACAGCCATGTTATCCTTCAGGCCATCGCAGAGGACCTCCGGGCCAGCTTGCCGGTGGCAGCCGTGCTGGAGTCGGAGCCCATGGCCGTGCAGAAGGTACAGCCGCTTCATGGCCTGCTGGTCTTTACCCAGCAGGCCGCCCGGCCCACAGTCCACGTGGATGCCTTCCTATATGACGAGGAGGCGGTGGACTCTCTCTGTGAGGAGGGCAAGATGAGCAGACACTACTGTCTGAACTGCGGATCACACAGAACCGCTGTGCTCGGGTTTATTTCTCACTCGTTCTCTGCCGTGGAGCTGCGGTTTCTGTTCCAGCACGCTCTCCCACAGCTGGCCGGCAGGGTGCTGGTGGATGTGGGCTCCAGGCTGGGTGCAGTGCTGTACGGGgGGTACTTATACAGCTCTGCAAGCCAGCTCATAGGCGTGGAGATCAATGCAGACTTCTGCCAGCTGCAGCGAGCAACAGTGGAGAAGTATAACTTTAAAGACAGAATCCAGATCGTCCATGCTGACATTTGCTCCCAGAATGCTCTGCTCCAGGATGCTGATGTCATCGTCATGAACAACGTGTTTGAGTATTTCCTGGATACCAGCGAACAAATCAGAGCATGGCAGTGTATGAGCCAACATGCAAGAAAGAAGGGCTCCCTGCTGGTAACTGTGCCAAGCCTCCAGGAGTCCATTGCCCGTCTTCAGGGCTGTGGGGATCTGAGCCAGTGGGTTGAAGAAGTGCCTCTGAACTATGACGTCTACATGGGGAAGGACAGCGACCCAGAGGCGCTGAGGCAGATCCACCTGTACAGAGTCCTCTGACCCGGAAGTACACAACAGAGGCTACTTATGAGCTCTCCGGACTGTACTGTTTTATAGCGGCCgagcaaaccaaaacaaacattttaactgGGACAAAACGGCAATAGTTGGACAATGatgatataaatacaaaaacttaCTTCTCATGATCTGCTCTATATCTTTTTCTTACCATTTACTATGGAATGGGAATAAAATTCGAGTGAAGTGTGTACATGTCTAGTCTAGTGTTGTGTTGTCATAATACTTGGGGTACACAAAATGAGccaaaaagaaacattattgCACCTCTGCTTTTTGAAGTCAAACTGCAATAATCTGCGCTTTCCTCTTCTGTGTAATCAGCCTGCGCCCTACGCTGAGGATTTCCCTACAGACTTTGCATTCTGGTGTATtctatacattgttttctttttgttaaacAAGCAACTCTGTTGGTTTTTGCTGGCTCTTCTGCTTTTGTTGACTTGTGGAGAGGCtgaaacaagtgtaaaacaACCGTTTCAGCCGCCTACAGACAGCgcaggaacaaaaacaaaggcagGAGCAGAGAGACGGTGGAGGGCATCATGGGGCTGTACTCTTTGTCTCAAGTACTCCCAGAGAGGGACCTCAGTGCCTTGGTTACAAAGCGCACTTTAACAGCTCACAAAGAGGAGCGGTGTATCACGTTTCAGGCCCTCAGACGGAGAGAACTCGAGGCACAAGGAAACGAGAGTTAAAGCCATGATGAAATGCACCGAGCAGTTGGCGttatttcctttgtgtttcCAATCGCAGCTCTTAGAGGGGTGAGGGCAGCGCCGGCTCACGTCCTGTGAATTATTCATGCCAGCGCTCTTTGTTTTCATGTGCATCAAAGAGGGGGAGATAAAAAGTGAAATGACTGGTTTGTGGTTTACAGTTTTGCTCGTTCAAAATCAAGGCACAGATTGAATGCCGGCCCAAAGACAGGCTGATCTGATGCACATCTTCCTAGACAGCACCCACCTCAGCAAcactttttgtctttattatggTTTCTCCAGGTTATTTAGTTTCTCTTTatcattcatgttttcttttctagaGTTTCTGGATTTTAGCtcttaaaacaatgcaattcaGGCACAGATAGAATAAGCTGAAGATCGCTTATCTACCAAATGGTAATGTCTGCTACAAGAGCCAGAATGGGTTTTTTCAAGATACTTGTTGGCAGTTTCAT

Function

GO:

id name namespace
GO:0051301 cell division biological_process
GO:0009987 cellular process biological_process
GO:0044428 obsolete nuclear part cellular_component
GO:0000151 ubiquitin ligase complex cellular_component
GO:0000152 nuclear ubiquitin ligase complex cellular_component
GO:0005680 anaphase-promoting complex cellular_component
GO:0031461 cullin-RING ubiquitin ligase complex cellular_component

KEGG:

id description
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast
ko04114 Oocyte meiosis
ko04914 Progesterone-mediated oocyte maturation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000607 True 2416 mRNA 0.48 8 19378217 19382131

Neighbor

gene id symbol gene type direction distance location
AMCG00000608 LOC107589661,LOC107679124 coding downstream 596 19361226 ~ 19377621 (-)
AMCG00000609 cfl2 coding downstream 20002 19354563 ~ 19358215 (-)
AMCG00000603 snx6,LOC106611228,LOC107693189,LOC106602024 coding downstream 26949 19342882 ~ 19351268 (-)
AMCG00000601 LOC107586642 coding downstream 36206 19337492 ~ 19342011 (-)
AMCG00000600 egln3 coding downstream 57301 19305246 ~ 19320916 (-)
AMCG00000611 sstr1,sstr1a,LOC107729242,LOC107586672,LOC107693103,LOC107734409 coding upstream 103808 19485939 ~ 19487042 (-)
AMCG00000619 NA coding upstream 170230 19552361 ~ 19593549 (-)
AMCG00000615 NA coding upstream 500333 19882464 ~ 19887052 (-)
AMCG00000625 gpr135,LOC107564991 coding upstream 588347 19970478 ~ 19971836 (-)
AMCG00000624 l3hypdh,LOC107684001 coding upstream 590240 19972371 ~ 19974873 (-)
G151291 LOC108257835 non-coding downstream 385373 18989075 ~ 18992844 (-)
G151218 NA non-coding downstream 521720 18856300 ~ 18856497 (-)
G151198 NA non-coding downstream 553549 18791375 ~ 18824668 (-)
G151167 hif1a,LOC102795631 non-coding downstream 732040 18644869 ~ 18646177 (-)
G151150 NA non-coding downstream 794104 18583408 ~ 18584113 (-)
G151393 NA non-coding upstream 16591 19398722 ~ 19400093 (-)
G151416 NA non-coding upstream 99197 19481328 ~ 19483307 (-)
G151446 psma3,LOC107729246,LOC107725600 non-coding upstream 230119 19612250 ~ 19619068 (-)
G151447 NA non-coding upstream 239006 19621137 ~ 19623387 (-)
G151678 NA non-coding upstream 1429409 20811540 ~ 20812254 (-)
AMCG00000599 NA other downstream 41475 19333717 ~ 19336742 (-)
G151090 NA other downstream 962376 18415522 ~ 18415841 (-)
G151089 NA other downstream 963659 18414055 ~ 18414558 (-)
G151088 NA other downstream 964752 18412840 ~ 18413465 (-)
G151087 NA other downstream 965692 18411488 ~ 18412525 (-)
AMCG00000613 NA other upstream 121568 19503699 ~ 19531054 (-)
AMCG00000618 timm9,LOC107729247,LOC107689314,LOC107693171 other upstream 261733 19643864 ~ 19646607 (-)
G151593 NA other upstream 1249958 20632089 ~ 20634946 (-)
AMCG00000635 NA other upstream 1362248 20744379 ~ 20752657 (-)
AMCG00000653 NA other upstream 1544560 20926691 ~ 20935429 (-)

Expression


Co-expression Network