AMCG00000608 (LOC107589661,LOC107679124)


Basic Information

Item Value
gene id AMCG00000608
gene name LOC107589661,LOC107679124
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 19361226 ~ 19377621 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000608
GCGGATCAAAACTTGTCGACTCCACACGGCTGACCGGAGGACTGGGGCGACCGGGAACCTGCAGCGCTGCTTCCTCAACGGATTACCCCCCGACTCCTCCACGCCACCCGACCGtaCGGCTCAGcgaggagagacagaggagacgacagacagacagagagagagagagagagagagagagagagcaagatgCCGCTTCTCCACAGAAAGCCGTTTGTCAGGCGGAGACCTCCGCTGGATCTGAAGCCGGACGAGGAGGTTTTCTTCTGCAAAGTGACCCGGGAGATCTTCCGGGACTACGACGAGTTCTTCGAGAGGATGATCCTGTGCAACAGCCTGGTGTGGAGCTGCGCCGTCACGGGCAAGCCGGGCCTGACCTACCAGGAGGCGCTGGAGAGCGAGAAGCGGGCCAGGCAGAGTCTGCAGAGCTTCCCCCAGGCGCTGGTCGTGCCCCTGCTGCACCTCACCGCCCTGACGCGGCGCTCCCGGCTGCACGAGATCTGCGACGACGTGTTCTCCTTCGTCAAGGAGCGCTTCTTTGCCGGGGAGGTGGTGGAGGTGACGGGCCGCACCGGAGCCAGGCAGCAGTGCTGCATCCTGGAGGTCCAAGGCCCCCATCAGAACGGCGTGGTCAATGGACACGTCAAGCCCCAGATGGACGGAGACAGCATCGTCATCAGCGATGACAGCGACGAGGAGGGCGGCTCCAAAGCAGCCAAATCCCCTGCGGTGAACGGGAAAAAGAGAGCCTCCATCAAAGCTTCGCTATTTAGATATAAAGTCCAGCCTGTGAAAGGCGATGGCTGTGATCCAATGACAGTTAAGGCCGCTCAGATCAGCCGTAAGAAAAACCTCTTCTCGCGGGACAGACTGAAACTCCTGCTGAAGCAGCACTGTGAGCCGCAGGGTGGATGGATTGGGCTGAAGGCTGCCACCGTCGCCAAGTACAAGCTTTCCGAAGAGACTTTCTCTCACTTCTTCCCGGATGAGCCTCCCTCGTTTGTCTTCAGCCCCCTGACTAAAGGTCGGGGTCGGCAACCCAAGGACTTCTCGTCGCCCGGAGAGCTGAGCTTCACGTCAGAAGGCGAGAGTCCGAAGCAGAGAAACAAAGGGACAAAGGAGAACGAAAAGCTGATGAAACTGAAGGAGGAAATGAGAGTCATGgctTCGGAAAAGGCCAAGCTGAAGAAGGAGAGAGCGGACGCGTTCGAAGCAaagaagagggagaaggaggacaaggagaaaaagagagaggaggtgaggaagctgctggaggaggagcgGCTGAAGAGGAAGGAAGAGAAGGAACGAATGAAGCTGGAGAGGGAAAAGGAGCGCGAGAAGCTcagagaggagaagaggaagtACGCCGAGTATCTGAAGCAGTGGAGCAAGCGGCGGGAGGACATGGAGTGTGACGACCTCAAGGAGCTGCCCGCCCCTCTGCCTGTGCGGACCCGGCTGCCCCCGGAGCTGTTCGGAGACGCGCTGATGGTGCTGGAGTTCCTGCAGGCTTTCGGGGAGCTGTTCGACCTGGAGGACGAGTTCCCCGACGGCATTACTCTAGAGGTGCTGGAGGAGGCGCTGGTGGGCTGCGACCCGGAAGGACCCCTATGCGAGCTGCTGTTCTTCTTCCTGTCGGCCATCTTCCAGGCACTGgcggaggagcaggaggaggtggCGAGAGAGCAGCTGGCTGAGGCGGACACCAAAGACCTGACTGAAGCCCTGGACGAAGATGCGGACCCCACACAGTCGGCCATCAGCGCCGTGGCCGCCCTCGCTGCCGCCTGGCCCCAGCTCTACCAGGGCTGCAGTCTGAAGCAGCTGGACCTGGACAGCTGCACCCTGTCGGAAATTCTGCGGCTTCACATCCTGGCCTCAGGCGCTGACGTCACCTCCACCAACGCCAAGTTCCGCTACCAGAAGCAGGGCGGCTTCGGCTCCATGGACGACGCCTGCGTGGAGCTGCGGCTCGGCAGCCCGGCGCTGCTCAAGAAGCTGTCCAGCACGGCCGTGTATGACCTGCTGCCAGGGGAGAAGCTGAAGATCCTCCACGCGCTGTGCGGGAAGCTGCTGACGCTGGTGTCCACGAGGGACTTCATCGAGGACAGCGCCGACATGCTGCGCCAGGCCAAGCAGGAGCTGCGGGAACTGCGGGCCGAGCAGCACCGCcgggagagggaggagatggCCAACAGGATTCGAAAAAGGAAGGAGGAGAAGCTAAAAGAGCAAGAGTTGAAGATAAAGGAGAAGCACGAGAAGATGAGAGAGGATGAGCTGCGGAACGGGGAGCAGGCGGCGGGGGGggaggaggagcaggaggagatgGACACGAGCACCGAGAGCCAGGAGGTCCCCAGGGACCCGGCCACCGAGGACGAGGAAGAGCCCGAGCTTTCCGGCAAGGCCGGGAACGCCAAGGCCGGTAAGCCCAAGGAGAGCGTGGCGGACTGCCAGGAGCCGCTGAACCCCGAGGAGGAGGTGGCGCTGCGCCAGGAACAGCTCCGCCGGGAGAAGGAGCTCCTGGAGCGCGTGCAGAAGGCGGCCGCCTGCACCTACATCCTGCCGCTGGGCCGGGACCGCCTCTACCGCCGCTACTGGCTGTTCCCCTCGGTGCCGGGGCTGTTCGTGGAGGAGGACTACTCGGGGCTGACCGAGGACATGCTGGAGCCCCGGCCCAGGCCGCCAGACGCTGCCGGGACCGCCCCCCTCGCCGGCCAGGGCCCCGAGGCCACCGATGCTCCCCCGGAACTCAGCGACTCCAAGCCCGTGAAGCGGCCCAACCTGTGGGCTTTCTACAGCTCCCCCCAGCAGCTGGAGCAGCTGATCGAGGCGCTGAACTGCCGCGGCCACCGGGAGAACGCGCTGCGCGAGGCCCTGCTGCTGGAGAGAGAGCGCATCGCCCAGCGGctcagccactgcccccccgAGCGCTTCCACATCCCGGAGAAATCCCAGACGGAGGGTAAAGCCGGGCCCTTCAAATCCAAGAGTGCCCAGCAGGCCGGCCAGGACTCCCCCCAGTCTGCAGAGAAGCACCTGGAGACTCGGCTAAGAGACCTGCTGTTGGACATCGAGGACCGCATCTACCAGGGCACTCTGGGGACAGTGAAGGTGATGGAGAGACAGGCCTGGAGGTCAGCCCTGGAGAGTGGCCACTACGAGCTGCTGTGCCCCGACGTCAAGGAGAATGGAGTGAAGACGGAGACCGAAGACCTGGACGGAGCCATGGAGGTGGAGGAGACCAGCCTGAAATTCAGCGCCAAAGACCGGTTACTTGAGCTGAAGACTGAAGGCCAAAGCGCCGTGTCCACCAGTACCAGCACTCCACAGCCCATCAACAACGCGGTCCACTACCTGGCGCTGGCGTTGACCCAGATCGAACAGGGCATCGAGCGCAAGTTCCTCAAGCACCCCTTGGATGCCAGCGATAGCGGCCGTGTGTGCAAGACGGTGCTGGACCGCTGGCGCGAGTCCCTGCTGTGCTGCTCCAGCCTGTCCCAGGTCTTCCTGCACCTGTCCACCCTGGACCGCAGCGTCATCTGGTCCAAGTCCATCCTGAACGCGCGCTGCAAGGTGTGCCGGAAGAAGGGCGACGCCGAGAACATGCTGCTCTGCGACGGCTGCGACCGGGGGCACCACATCCACTGTGTCCGGCCCAAACTCAAGGCCGTTCCCGAGACAGACTGGTACTGTCCGGAGTGCCGTCCCAAGCAGCGCTCCCGCCGCCTGTCCTCGCGCCAGAGGTCCTCCATCGACTCGGAGGAGGAGCAGGAATcggagagtggggggggggaggaggaggaagaggaggaggagacggaggaggaggaatctgaagaggaggaggaatctgaggaggaggaagagatcgCGCCGAGGAAGGGCCGAGCGGAAGTCAGGCTGCCTATATCCACCAAAGGCGGCAAATCCAGCGCCACGGGCCGGGCGGTGCCTAGACCGACCGAGTCCGGCCGGTCCACCCCCCGCAGCCAGCAGGGCACACCGAAACAGAGCGCCTCCGCCGGGAAGGGGAGCGCCAAGAGCTCGGGGAAGAAGGGCAAGGCCACCCCTAGCTCGGACAGCAGGCCACCCCCAAGGCAGGGCAGCCGAGCCAGTTCCCGGCTCAGCCAGGAGGCCCGGGCGGCCGACGGCTCCTTCACGGAGTCCCCCGCCGGCTCCCGACTGCGGGGCAGGAGGACCGCGGACAGCACCCCGGAGCCCCCTGCCCGCCAGGCCGGCCTGCACCGAGCCTCCCCACCGGACCGGCACGCCGAGGCGCCTGGCAAGAAGCGGCCTGTCTCCGaccAGCCTTCCAAACCCAAAGTGGTCCTGACTCCCCCGTCCTCCTCGAACCGCCGGAGCTCCGGGAGGAACCACGGGGTCCACGAACTGTCCACCTGTGAGCAGCTGATCGTGGAGCTGGTGCGACACGAGGACAGCTGGCCCTTCATGAAGCTGGTCTCTCGGACTCAGGTACCCGATTATTTTGACATCATCAAAAGGCCAATCGCCTTGAGCATCATCAGGGAAAAAGTGAACACCTGTGAATACAAAATGGCCTccgaGTTCATGGAGGACGTGGAGCTGATGTTCTCCAACTGCTTCGAGTACAACGCGCGCAGCACCAACGAGGCCAAGGCTGGGGTGCGGCTGCAGTCCTTCTTCCACTCGCAGGCGCAGAAACTGGGGCTCCAAGTCCAAGCCGGGGAGCAGACGtcctcccctccccccgccAAGCGCTCGAGGATGTGAATCGCCTCCCCCCTGCTCCTCGCATTGTAAAGATGGGAGGGGGGAGAACTGTCGGGAAAAGCCTGCTTGCGTTAGCTCAGTTAAAGGGGCGGGCCTGGTTCGGACGTGAGCTGAGACTCGTGTGCAATTATGTTCACGGAGATGGTTTAGCCACAACAGGGTTTAAAGAGCGTGCCAGTGGAAAAATCACGCCTCTCTGAGATCTTGGGGAACTCGGCGGCCTTGAAAAACAGATCTGCACTGTAATCTCTGCATCTGACGTACTCAGgagacttgtttttgtttgttcaggtATGTGTCGTTGATTGCAATGACGCGTCTGCTTTTGTATATTGGTTACATCTCTAGATCTGACTTCTGcagaattgttttgtattaaaattgaccttgttattattttttttatcggTTTGTTTTCAGTGAAAATGTTCTGGGTTTGCTCTAATGAATTGACGATAACAGCCCAAGGAGGAGTTTCTGATGGGTTGGGTTTGTTTTTGCCGTAGGGATGTTGTTTTTAGTCTTCCAACAGtgaaaatccaaattaaaaacGGGGAAACTTCATTGACAGGTGCCCGAGCTTCCGTGCAACACTACATAGGAAACAGAAACTCAGTTCACCTTCAGCCCGACGAccacatagatatttatttagtgttgAGTATGATTTGAGGTTCAAGACCtgtttctatttataaaaaTTTCTAATGCGGAAAGGTGTTTGCCACCTGGAATTTGTCATTGTTGTATgtacaaaaaattatatatatcagttttcCATTCATGCAATAAACTTAGACCACAGCAAGTGTTGAAAGTCATGTTTTTTCTGACCTTTTTGTAccttttctgtacatttttctac

Function

NR:

description
PREDICTED: bromodomain adjacent to zinc finger domain protein 1A-like

GO: NA

KEGG:

id description
K11655 BAZ1A, ACF1; bromodomain adjacent to zinc finger domain protein 1A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000608 True 5626 mRNA 0.60 27 19361226 19377621

Neighbor

gene id symbol gene type direction distance location
AMCG00000609 cfl2 coding downstream 3011 19354563 ~ 19358215 (-)
AMCG00000603 snx6,LOC106611228,LOC107693189,LOC106602024 coding downstream 9958 19342882 ~ 19351268 (-)
AMCG00000601 LOC107586642 coding downstream 19215 19337492 ~ 19342011 (-)
AMCG00000600 egln3 coding downstream 40310 19305246 ~ 19320916 (-)
AMCG00000602 NA coding downstream 58346 19261021 ~ 19302880 (-)
AMCG00000607 NA coding upstream 596 19378217 ~ 19382131 (-)
AMCG00000611 sstr1,sstr1a,LOC107729242,LOC107586672,LOC107693103,LOC107734409 coding upstream 108318 19485939 ~ 19487042 (-)
AMCG00000619 NA coding upstream 174740 19552361 ~ 19593549 (-)
AMCG00000615 NA coding upstream 504843 19882464 ~ 19887052 (-)
AMCG00000625 gpr135,LOC107564991 coding upstream 592857 19970478 ~ 19971836 (-)
G151291 LOC108257835 non-coding downstream 368382 18989075 ~ 18992844 (-)
G151218 NA non-coding downstream 504729 18856300 ~ 18856497 (-)
G151198 NA non-coding downstream 536558 18791375 ~ 18824668 (-)
G151167 hif1a,LOC102795631 non-coding downstream 715049 18644869 ~ 18646177 (-)
G151150 NA non-coding downstream 777113 18583408 ~ 18584113 (-)
G151393 NA non-coding upstream 21101 19398722 ~ 19400093 (-)
G151416 NA non-coding upstream 103707 19481328 ~ 19483307 (-)
G151446 psma3,LOC107729246,LOC107725600 non-coding upstream 234629 19612250 ~ 19619068 (-)
G151447 NA non-coding upstream 243516 19621137 ~ 19623387 (-)
G151678 NA non-coding upstream 1433919 20811540 ~ 20812254 (-)
AMCG00000599 NA other downstream 24484 19333717 ~ 19336742 (-)
G151090 NA other downstream 945385 18415522 ~ 18415841 (-)
G151089 NA other downstream 946668 18414055 ~ 18414558 (-)
G151088 NA other downstream 947761 18412840 ~ 18413465 (-)
G151087 NA other downstream 948701 18411488 ~ 18412525 (-)
AMCG00000613 NA other upstream 126078 19503699 ~ 19531054 (-)
AMCG00000618 timm9,LOC107729247,LOC107689314,LOC107693171 other upstream 266243 19643864 ~ 19646607 (-)
G151593 NA other upstream 1254468 20632089 ~ 20634946 (-)
AMCG00000635 NA other upstream 1366758 20744379 ~ 20752657 (-)
AMCG00000653 NA other upstream 1549070 20926691 ~ 20935429 (-)

Expression


Co-expression Network