AMCG00000609 (cfl2)


Basic Information

Item Value
gene id AMCG00000609
gene name cfl2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 19354563 ~ 19358215 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000609
ATCCCCGGCGCACCGCACCGCAAACCCCGACCGACCACCGGACGACATGGTGAGCTGCGCTGGCCCTGCGGGGGCCCGGACACACAGCCTCTCTCGGTGTCGTGCTGGTCCCGGGGCCGCCTGCGGGGAGGATGCCTCAGTGCGGGGGGCCGGAGGGCGCGCAGAGCCGGGGGAAGGTGCAGGAAAGCGTGTGAAGTGGGTTCAGGGGGACTCGGTGTTGCGGTACCGCAGGCCCCTGCAGCCTCCAGGCGGCCATTTTAACCTAATTTTAGCCGCAGTGACCGGCAGCCCAAGGCCATTTGCCGTGAAGAGCGTTGAAACGCGCGGGGCTGTGCGGGCTGTGCGGGACAGCGCATGCGTGCGGGGCCGATGCGGGGCTGATGCGGGGCCGTTAGATTGGCGAGAGCAGGGGGCACAGGCTGTACCGTGCCATTTCTTCCCGGGTGTCGTGGTGGGCGGCATCTCCCAGCGCCACCTGGGTGCCCGGCTTGACGTCTCGTTctgtatccccccccccccaccacaggCCTCTGGCGTGACAGTCAACGATGAAGTCATCAAGGTCTTCAACGACATGAAGGTGCGGAAATCCTCCTCCTCGGAAGAAGTGAAGAAGCGGAAGAAGGCCGTGCTGTTCTGCCTCAGCGAGGACAAGAAGAAGATCATcgtggaggaggggaaggagaTCCTGGTGGGCGACATCGGCGAGTCCGTGGACGACCCCTACGCTTCGTTCGTGAAGCTGCTGCCTCTGAATGATTGCCGGTACGGCCTGTACGACGCCACGTACGAGACAAAAGAGTCCAAGAAAGAAGACTTGGTATTTATATTCTGGGCCCCTGAAAGTGCTCCTCTGAAAAGCAAGATGATTTACGCTAGTTCTAAAGATGCCATCAAAAAGAAATTCACAGGTATTAAACACGAATGGCAAGTCAACGGCTTGGACGACATTCAGGACCGCTCGACTCTGGCAGACAAGTTGGGAGGCAACGTGGTGGTTTCACTCGAAGGGAGACCCTTGTAAACTGAAAGACAAGTGCCATCTGGATCCGAGAAGCTTCCGTTCTAACCGTTCTGTTGATACCATTTGATCCTATTGGAATAGTTTTAGTTCTTTGttggttcttttttttgttttgttctttccaCATGAAGGAGATCTCATTAACTTTCAAACGCCTGCCAGCGATTGCCATTCGACTATCTAATCCTGGTAGATTAAATACACGTAGAACTTCGAGGAATGCGTAAACGTTGTAcgttttgccaaaaaaaaaaaaagaacaccaGAGTCCGGCGTCGTACGCATTCCTCACGACAAAGTCCAGCGATGATTTACGTTGTGTAGCTTTAGCACAAAACCAGCGAGCTTTCGGCACGGCTGGACAATGCGTCCCACTGCTCGAGCGGGCGCCAGTGTCCGTGTTACCAAATTGCACTCGGTTGAGTATCCCTGAGGCGTGTGTTCTGTTGTAGCCCTCAGTACCCTGGGTTTTTGACATGGCAAAACACGTGTTACACTATGCATACAAACAAgcactttttttgtaattatattttgttcagacacttcaaaaacaaacaaaaaaggaatgcCAATTGAGTTTCTGTATTTATGTCATCTACCAATTAAAGTACCTCAGTTTTCATTCCTGTTCTGCATCTTTTACAACCGAAGGGACGGCGAACGCGACCAGAGGCGAGAGAGCGGCTCGGTCACCCGCTGGTTGTCGCTCGAGTGTCCGTTGCTGGCTGAGatgagggggcggggggggcggaTACCGCAGTTTTCAACAcgcaaggaaaaaaacacaatgtcatTGAAGATGACAGTGTCTGTATGAATGGATCCTGAAGTGGAGGGTTTTCTTTTGAGATCAGCGGAGTCGCCACGCTGCAATAAAACCTTGTGGCTGATGCTGGGGAGACGCCTTCTTCTTTGTGTTGAAGCGCTGTCCTTATCTCGGTCGAACAGGCCTTTACAGAGCTGTGTAGTCATGTTATtaatgataacaacaacaaaagaagcGTTTTGGAAAGGGAAGGAAGCTGCCCTTTTTAAGGTTCTTCATGGCCCAGGAAATACAGAgtagaaacacatttaaaaatgaaatctcGGCTCAGAGTGAAGACCTGGACTGTAGGAGTGAAGGTTGTGGGGTTTGAATGGTAGTCCTCTGTGTGTAAAGATGATCAGGAAATATCCCCAAGCTACCGAGAGCAGGACGCCACCGGTCCATTCTTCAATTTGCACTTGTTTTTGTCTTCCTGGTGACTAAATATTCAGATATTCCTAACCAGAAGGGATGGGatgggaagggaagggaaggaaatgaatgtaaaaaagcTGACTGTCCGCTGCCTGGTTTTTGGTGAGT

Function

symbol description
cfl2 Predicted to enable actin filament binding activity. Predicted to be involved in actin filament fragmentation; actin filament severing; and cell motility. Predicted to be active in actin cortical patch. Is expressed in lens; myotome; solid lens vesicle; and somite. Human ortholog(s) of this gene implicated in nemaline myopathy 7. Orthologous to human CFL2 (cofilin 2).

NR:

description
cofilin-2

GO:

id name namespace
GO:0030042 actin filament depolymerization biological_process
GO:0015629 actin cytoskeleton cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
K05765 CFL; cofilin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000609 True 2378 mRNA 0.52 5 19354563 19358215

Neighbor

gene id symbol gene type direction distance location
AMCG00000603 snx6,LOC106611228,LOC107693189,LOC106602024 coding downstream 3295 19342882 ~ 19351268 (-)
AMCG00000601 LOC107586642 coding downstream 12552 19337492 ~ 19342011 (-)
AMCG00000600 egln3 coding downstream 33647 19305246 ~ 19320916 (-)
AMCG00000602 NA coding downstream 51683 19261021 ~ 19302880 (-)
AMCG00000583 nudt14,LOC107683965,LOC102794143 coding downstream 198321 19143125 ~ 19156242 (-)
AMCG00000608 LOC107589661,LOC107679124 coding upstream 3011 19361226 ~ 19377621 (-)
AMCG00000607 NA coding upstream 20002 19378217 ~ 19382131 (-)
AMCG00000611 sstr1,sstr1a,LOC107729242,LOC107586672,LOC107693103,LOC107734409 coding upstream 127724 19485939 ~ 19487042 (-)
AMCG00000619 NA coding upstream 194146 19552361 ~ 19593549 (-)
AMCG00000615 NA coding upstream 524249 19882464 ~ 19887052 (-)
G151291 LOC108257835 non-coding downstream 361719 18989075 ~ 18992844 (-)
G151218 NA non-coding downstream 498066 18856300 ~ 18856497 (-)
G151198 NA non-coding downstream 529895 18791375 ~ 18824668 (-)
G151167 hif1a,LOC102795631 non-coding downstream 708386 18644869 ~ 18646177 (-)
G151150 NA non-coding downstream 770450 18583408 ~ 18584113 (-)
G151393 NA non-coding upstream 40507 19398722 ~ 19400093 (-)
G151416 NA non-coding upstream 123113 19481328 ~ 19483307 (-)
G151446 psma3,LOC107729246,LOC107725600 non-coding upstream 254035 19612250 ~ 19619068 (-)
G151447 NA non-coding upstream 262922 19621137 ~ 19623387 (-)
G151678 NA non-coding upstream 1453325 20811540 ~ 20812254 (-)
AMCG00000599 NA other downstream 17821 19333717 ~ 19336742 (-)
G151090 NA other downstream 938722 18415522 ~ 18415841 (-)
G151089 NA other downstream 940005 18414055 ~ 18414558 (-)
G151088 NA other downstream 941098 18412840 ~ 18413465 (-)
G151087 NA other downstream 942038 18411488 ~ 18412525 (-)
AMCG00000613 NA other upstream 145484 19503699 ~ 19531054 (-)
AMCG00000618 timm9,LOC107729247,LOC107689314,LOC107693171 other upstream 285649 19643864 ~ 19646607 (-)
G151593 NA other upstream 1273874 20632089 ~ 20634946 (-)
AMCG00000635 NA other upstream 1386164 20744379 ~ 20752657 (-)
AMCG00000653 NA other upstream 1568476 20926691 ~ 20935429 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_011922 cfl2 coding NC_007128.7 CM002901.2 10007071 ~ 10025234 (-)
eurasian perch (Perca fluviatilis) G147554 NA unknown NC_053125.1 CM020922.1 29637460 ~ 29640906 (-)