AMCG00000611 (sstr1,sstr1a,LOC107729242,LOC107586672,LOC107693103,LOC107734409)


Basic Information

Item Value
gene id AMCG00000611
gene name sstr1,sstr1a,LOC107729242,LOC107586672,LOC107693103,LOC107734409
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 19485939 ~ 19487042 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000611
ATGCTGCCCAACAACTCCTCCCGGCACCTGGGCATGGAGGACAGCTTTTATCTCATGAACTCCTCGGGCAACGACACCTTGGGCGACTCTCAGGGCAGCGCCATACTGATCTCCTTCATCTACTCCGTGGTGTGCCTGGTCGGGCTCTGTGGCAACTCCATGGTGATTTACGTGATCCTGAGGTATGCCAAGATGAAGACGGCTACTAACATCTACATCCTGAACTTGGCCATCGCGGACGAGTTGCTCATGCTGAGTGTGCCCTTCTTAGTCACCTCGTCCCTGCTGCATCACTGGCCGTTCGGCTCGCTGCTGTGCCGCCTGGTTCTCAGCGTAGATGCCATCAACATGTTTACGAGTATCTACTGCCTTACAGTCCTGAGCATTGACCGCTATATCGCCGTGGTGCATCCCATCAAAGCGGCCCGCTACCGGAGACCCACTATAGCCAAGATGGTCAACTTGGGGGTTTGGATGTTCTCCATCATGGTCATTTTACCGATTATCATCTTCTCCACGACTGCGCCCAATTCCGACGGCTCGGTCGCCTGCAACATGCAGATGCCCAACCCGCAGCGGCAGTGGATGGCGGTGTTCGTGATCTACACCTTCCTGATGGGCTTTCTGTTCCCCGTCATCGCCATCTGCATGTGCTACATCCTCATCATCGTGAAGATGCGAGTGGTGGCCCTGAAGGCGGGCTGGCAGCAGAGGAAGCGCTCCGAGAGGAAGATCACGCTCATGGTCATGATGGTGGTCACCGTGTTCGTGATCTGTTGGATGCCCTTCTACATCGTCCAGCTGGTGAACGTTTTCGTGCAGCAGCACAACGCGACCATCAGCCAGCTCTCGGTCATACTGGGCTATGCCAACAGCTGTGCCAACCCCATCCTCTACGGGTTTCTCTCGGACAATTTCAAAAGGTCCTTCCAGAGGATCTTGTGCCTCCGGTGGATGGACAATGCGACGGAAGAGCCCATCGATTACTACGCCACTGCGCTGAAGAGCCGGGCGTACAGCGTGGACGACTTCCAGCCGGATAACCTGGAGTCGGACAGCACCTACAGGAACGGCACCTGTGCGTCCCGGACCACCACACTGTGA

Function

symbol description
sstr1a Predicted to enable neuropeptide binding activity and somatostatin receptor activity. Predicted to be involved in cellular response to estradiol stimulus and neuropeptide signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Orthologous to human SSTR1 (somatostatin receptor 1).
sstr1 Enables somatostatin receptor activity. Predicted to be involved in cellular response to estradiol stimulus and neuropeptide signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway; cellular response to leukemia inhibitory factor; and glutamate receptor signaling pathway. Located in plasma membrane.

NR:

description
PREDICTED: somatostatin receptor type 1

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004994 somatostatin receptor activity molecular_function

KEGG:

id description
K04217 SSTR1; somatostatin receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000611 True 1104 mRNA 0.56 1 19485939 19487042

Neighbor

gene id symbol gene type direction distance location
AMCG00000607 NA coding downstream 103808 19378217 ~ 19382131 (-)
AMCG00000608 LOC107589661,LOC107679124 coding downstream 108318 19361226 ~ 19377621 (-)
AMCG00000609 cfl2 coding downstream 127724 19354563 ~ 19358215 (-)
AMCG00000603 snx6,LOC106611228,LOC107693189,LOC106602024 coding downstream 134671 19342882 ~ 19351268 (-)
AMCG00000601 LOC107586642 coding downstream 143928 19337492 ~ 19342011 (-)
AMCG00000619 NA coding upstream 65319 19552361 ~ 19593549 (-)
AMCG00000615 NA coding upstream 395422 19882464 ~ 19887052 (-)
AMCG00000625 gpr135,LOC107564991 coding upstream 483436 19970478 ~ 19971836 (-)
AMCG00000624 l3hypdh,LOC107684001 coding upstream 485329 19972371 ~ 19974873 (-)
AMCG00000623 jkamp coding upstream 488074 19975116 ~ 19988480 (-)
G151416 NA non-coding downstream 2632 19481328 ~ 19483307 (-)
G151393 NA non-coding downstream 85846 19398722 ~ 19400093 (-)
G151291 LOC108257835 non-coding downstream 493095 18989075 ~ 18992844 (-)
G151218 NA non-coding downstream 629442 18856300 ~ 18856497 (-)
G151198 NA non-coding downstream 661271 18791375 ~ 18824668 (-)
G151446 psma3,LOC107729246,LOC107725600 non-coding upstream 125208 19612250 ~ 19619068 (-)
G151447 NA non-coding upstream 134095 19621137 ~ 19623387 (-)
G151678 NA non-coding upstream 1324498 20811540 ~ 20812254 (-)
G151725 NA non-coding upstream 1427399 20914441 ~ 20914680 (-)
G151726 NA non-coding upstream 1428199 20915241 ~ 20916217 (-)
AMCG00000599 NA other downstream 149197 19333717 ~ 19336742 (-)
G151090 NA other downstream 1070098 18415522 ~ 18415841 (-)
G151089 NA other downstream 1071381 18414055 ~ 18414558 (-)
G151088 NA other downstream 1072474 18412840 ~ 18413465 (-)
G151087 NA other downstream 1073414 18411488 ~ 18412525 (-)
AMCG00000613 NA other upstream 16657 19503699 ~ 19531054 (-)
AMCG00000618 timm9,LOC107729247,LOC107689314,LOC107693171 other upstream 156822 19643864 ~ 19646607 (-)
G151593 NA other upstream 1145047 20632089 ~ 20634946 (-)
AMCG00000635 NA other upstream 1257337 20744379 ~ 20752657 (-)
AMCG00000653 NA other upstream 1439649 20926691 ~ 20935429 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_011926 sstr1a coding NC_007128.7 CM002901.2 10247563 ~ 10249095 (-)
grasscarp (Ctenopharyngodon idella) CI01000310_03872351_03873577 SSTR1, SSTR1A coding CI01000310 null 3872330 ~ 3874259 (-)