AMCG00000613


Basic Information

Item Value
gene id AMCG00000613
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 19503699 ~ 19531054 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000613
ATGCGGCCTATAACTCAGTCCAGGCCACGGGCTCCCAAGACAACTGCTGCCAAAGAACCGGGACCCACCGCGGTCAAGAGTCAGCCACACAGGTCCAGTCCGAGACCGCCATTGGCGAGGGCCCCCCAGACACCGGGCTCAGAGAGCAGTGAGGACAGCGAGGACAGCGACGCCTCTCACTCCTCCGACACCTCGGACGAGAGTGAGCGCGGGAAGCTCAAGAGGAGGCTGGGAAAGAAGGGAGGAGAGGTGAGGACAGAGAGCCGGCGTCCCACCCCGCTTCTGCAGTCGACACCCACTGACGGAGGACAGCCTGGGAGCAGTGCAGGGTCCAGCCGCACGCGCGGGGTGAGGTCTGCCGCCGAGCTGCTGGAGGAAGCCGAGGACATAGCTCGGACAGATCCATCAATACACGAGAGGCGCGTCCAGCAGAGACAGCCGGAAGGGGCCACGCTAGCGGTGAAGACGCTGATGAGGGGGAGAGCCAGGACGGTGGATGAGATCATCGCCTCCCTGCAGGCTGGGAGCGCCACAGACTCCCTCTCGGCGTCAGACCTGATGATCAAAGAGCTCACAGAGAGAGTGCTCGGCCATGAAACCGAGGGGGAAATAAGTGATTTAAAGGATGATCCAACAAGCGGTTCCAACGAAGGACCCAAAGAGAGTGCGGCAGAGACTTTGAAAAGTGAAGCTGAAGATACACAATCAGGGCCTCCTCCGGGGATGTCAACCAGAGATGTCCCTCTACCACACGTGTCGATCAAAGTGGCTGAGAAGAAGGGCTCAGCTGGGCTCTCAGCGGATCCACAGCCGTCCTCTGATGCCCCCTTGTCTTGTGAAGTGGTTTCTTCACAGACTGTGTCGCTGAAAGACTCTGTGTTGGGCTGTGCACAAGACACGGCCCTGGAACGTCCTGAACAGgtGACATACTCTGATATAATCAGTGTGAAAGGAGTGCCAGTTACAACTGCTCGGGGTTTACAGAAGAGCCAGCCAGTGCAACAAGTTTCCTTCCTGGCAACGTGGACCCCCAAAACCAATGTTCAGGAGTATAAGACTATCCATCACCTGTGCACGGCCCCCTTGACCCAAGTGCTGCCCCTGGATTTACAATCGACGTCTCGGCTCTGCCACTCTCCCAGCCGAAGGCCCGCCTCTCTCCACATCCTGCCACAGGGAGCAGCATCGAGCCGCCGTACAGACCCGGCTGAGACGCACTGGGTTGTGTCTGAAGGAGAGCGTTGTGCTCCTGTGTATCAGGCAGAGCAGAAGGACGGTGTCGTCCTCCTGCCAACGCACAACGACCTGACCGAGTGGCAGAAGATTGCGGAGTACTACGTGGAGAGGCCGAGGATGGTGCTTTTAGGGCGACAGGCTTCTATGTACACGAACGAATCAAAGCTGTTCTGGAACCCCGCGCCTCCGAAGTTCACCTTCACCCCGTCTTTTGTGCAAGACAAGTTGTTTCCAAAGTACCAGGGAAGTGGAAATGAAATGCCAAACGTGCTGCCAGACCTCTATTGTGACTTGCAAGATTTAAACGAGTCAGACCAAGACCTTTTggatgtgcaaaataaaaccgTAGAGgcAGTCATCTGGAGGTCCCAGTCAGCCCCTGACCTCTCTGTGCTGCCAGACTCAGGTCTAAGAGTCCCTGCCGATTTCAAAGCGATCAAGAAGGAGGTGGACGTCGTGATTAAGCAGCTATCACAGAGTAAGACGGCGGCCGTGTCAGAAGCCCGCAGTCCCACGATCCCCGTCTCAAAGGAAGCGGAGTCGATCCCGGCCGATTTGCCAGAACCCGTCGGTAGCCAAAGCCAACTCATGCAAAGACAGAAGAAGGAAAATGTCTCTCTTTCTGATGTCGCTCGGAAAGCAGGGCAGACTTATATTATACACCCCAGGAAGAAaagcacaagaaagaaaaagttgaGCCCAGAAAAGCTGGCTTTTGTAGAAAGGAAACTAAATCAACCACCAAGGACCCTGGCaaggtGTGAGTCCTTGCCCGCGCTCCAGAGAAGGACAGATCCCTCTTTGAGAGTCCCCAAGAAGACGCTCCGGTCTAGAAGGGCCAGCCTCCCTGCACTCCTGGATTTTGAACACTTTGCGGCGGCTCGAGGCGGGATCCCAGAGGATGCCATCCCCAGAGAGTGGGTGAGGGACATCTGGGACAGCTGGTTTGATGAAGTGTTCCCCCCATCTGATGTAGAGACTGGAGCGGACTATCCGAGACCGACGCCGCTGTATCCTGAAAGACGGAGCTCTATTGATACGCGACACACAGACGCCGAGGGTCCAGTCCCGGACGAAGTGGACCTCTCCTGTACTCTCGGCGCTGAAGTCACTGCCTCCGATTTGCAGAGTGAGGTCGACAAGCTCACACAGGTTATAGCTGCACAGCGAGGGTCAGGGGCTTTCGATTTGTGCCGCAGAGGAGCCCTGCTTAAAAAACTTGGCCATCTTACCCTGGCGCTGGAAGATCTGAATACAGTGATTGCCAGAGAGCCACTCTTGCTGGATGCATATTGGCACAGACATAGTATTcatctgctgaagagaaacctCGGGAAAGCGTTGGAAGACCTGAATTTCATAATCAAGCACAACAGAAACCATGCAGACGCCTTTAGGTCCAAAGCGGAGATCTACCGAGCGCAAGGCGACTCTACGTTGGCCATAATAAATTACACTCAAGCCATCAAGCGCGGGCCGGAAGATGATGAGAACTATTTTCGGAGGGCAGAGATGTATGAGAAAACAAATGAGACTTTACTGGCCATGGAGGATTACGCGATGGCCTTCACGATCAATCCCAGGCGGACCGACGCGCTGATGATCCACGGCCTGCACCATTTCCGCCGCTCCAATTGGACGGTGGCCCTCTCGGACTTCACGGCCTTACTGAAGCAGGAGCCCAGAAATGTGGAAGCGAGGACATACAGAGGGAGAACATACGCCAAGCTGTCCCAGCACAGAGAGGCAATAGAAGATTTATCCGCTGCGATTTATCTGGACCGTAACAACTGGGTCGCCTTCTACCTCAGGGGCTGCTTGCTGAGAAAGGTGCACCCTGAAATGGCCATAAAGGACCTCAGCGCTTCAGTGCTCATCAACGACAGCTTTGAAAACCTCAGCGCCTTCCTGCACCGCGGCGTCCTCTACGCCGAGCAGAGCCGGTGGGCGTCGGCCGTGGGGGACTTCGAGAGGGTGCTGAAGCTCGACAGATGTGTCCCCGTCGCTCATGTGAACCTGGGCCTCGTCTACATGTTGAAAATGGAAAACCATTCCGAAGCGATCCGGAGATTCACCAACGCGCTGAAGGTGGACCCGACTTACATCAGAGCGCACATCTGCCGAGCCCAAGCCTATGCCAAGGTGCGTGATTTACCGAGGGCCCTGAAAGACATAACTCATGCGATTCATCTCCAGCCCAACACACACCATCTGTACATAATGAGAGGCCAGTATTTGTGCGACATGAAGGATTTTGAGCTGGCGAGATTCTGTATCCGATACGCTGCGGAAATGAATAAAGGCTCCTCCCCCATCCAGCAGGCCGCGGTGCAGTCCTTCCTGGGCAACAACGCCAGAGCCATCGCCTGCCTCTCCTCAGCCACCAGGACACGGCCGTCCCCCTCTGCCTTCATCCTGCTGGGGAAGACTCAGATGAAGGCCAGGAAATACACGGACGCCATCGAGAGCTTTGAGAAAGTGCTGACGCCACTGTGCCCCGATCGAGACTGCTGCTCTGCCCCCGACGCCGCTGAGGTTTTCTATTTGACCGGCCTTTGCCATGTGGCCCAGGCCAACCTATTACAGGCGGTGGAAGCCTTCAGCAGCGCAGTGAAGATCAGCCCGGATTCTGCGGACGCGCTTTACCAGCGTGGCCTGTGCCGGATGCATCTTCAACAGTCGAAGTGCGTCCAGGATTTCAACAGGGCTCTGTCGATCAACCCCAACCTCTTCCAGGCGATCCTCAACTGCAACGAAGCCCTGCGGATTCAGCCCCGGAGTGTGAGAGCTTATCTGTACCGGGGGGCGCTGAAGTTCTTCATGAAGatATACAGGTACGCCGTACAAGATCTCACCACAGCCATCGAGATCGACGAGACGTGTTCTCTGGCGTACTATAACAGAGGGGTGTGTTACCAGCAAATGAAGGAGCACGGAAAGGCTTTGAAGGACTACGGACGCGTCCAGCATCTCGGAAGCAGAAAAGAAGTCGAGCTCAAAGTGCTGATTAATCGAGGGCTTCTGTACGTGGAGCTCAATGATCCTAATAATGCACTTCAGGATTTTAAAGCCGCCTCAAGAAAGAGCCCAGAAGATGCCTCCAATTTCCATGCGGTGGGAGTCCTTCACCACCGACTTGGTCACCTGGAAGAAGCCACGGCTGCATTCACCCAGGCCCTGAGACTCCGGCCCTTCTTCCTCGAGGCCTACGTGGGCCGAGGCAACGTTTACATGGACTACGGACACCAAGACGCCACCAAACAGGCGCAGAGAGACTTCCTCACGGCGCTGCACCTAAACCCCACGTGTGCCAAGGCCAGACTCGGCCTGGCGTTCAACTTCCAGGTGTTGGGCCGGTTCAGCAAAGCCTGGAATCAGTTGACCATCGCCATCGAAGTCGACCCGTCCTGCTGGGCCGCCTACGAAGGCCGATCCGTCATCAACCTACAGATGGGCCACACCTTTTCGGCTTTCCAAGACATTAACGCCGCCTTGAAGTACAATCCCCTTTCTGATCAGCTGATCACAAACCGCGGCGTCATCAACCAATTCATGGGAGACAAAGTCAACGCAATGAAAGACTATCAGGCGGCCATAGCCCACAACCCGCAGTACGCACTGGCTTATTTCAATGCTGCCAACCTGTACTTTTACAACAGGCAGTTCGAACAGGCCAGTGAGTACTATAGTAAAGCATTCGATCTGGACCCCAGTGACGACTCTGCCGCGCTCAACCGGGCCATCGCCAGGACGTTGCTGGGAAATGTGCCGGAAGCCTTGAGGGACTTCAGCGCCGCCTGCAAGCTCAACCCATTCTCCACTCACGTGTATTTCAACAGGGCTAACCTGTACATCTCTGTGAAGAAATACAAGTCTGCGGAGAAAGACCTCTCCCAGGCTCTGCTCCTGCAGCCCAACGACGCCCTGGTGTATAAACTGCGAGCCGACGTGCGGGGCAAGCTGGGATCCACGGAGCTGGCCGTTTCGGATTACAAGAAAGCCGTGCGTCTCGAGGAGGCAGCCCAAGAGCTGTGCAACCCGCGTCTGCAGACGATCCGCTGA
>TU190650
CTCGGACTTCACGGCCTTACTGAAGCAGGAGCCCAGAAATGTGGAAGCGAGGACATACAGAGGGAGAACATACGCCAAGCTGTCCCAGCACAGAGAGGCAATAGAAGATTTATCCGCTGCGATTTATCTGGACCGTAACAACTGGGTCGCCTTCTACCTCAGGGGCTGCTTGCTGAGAAAGGTGCACCCTGAAATGGCCATAAAGGACCTCAGCGCTTCAGTGCTCATCAACGACAGCTTTGAAAAC
>TU190651
GTCCAGTCCGAGACCGCCATTGGCGAGGGCCCCCCAGACACCGGGCTCAGAGAGCAGTGAGGACAGCGAGGACAGCGACGCCTCTCACTCCTCCGACACCTCGGACGAGAGTGAGCGCGGGAAGCTCAAGAGGAGGCTGGGAAAGAAGGGAGGAGAGGTGAGGACAGAGAGCCGGCGTCCCACCCCGCTTCTGCAGTCGACACCCACTGACGGAG

Function

GO: NA

KEGG:

id description
K24929 TTC6; tetratricopeptide repeat protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000613 True 5298 mRNA 0.56 31 19503699 19531054
TU190650 False 247 lncRNA 0.52 3 19518546 19519813
TU190651 False 215 lncRNA 0.66 1 19530748 19530962

Neighbor

gene id symbol gene type direction distance location
AMCG00000611 sstr1,sstr1a,LOC107729242,LOC107586672,LOC107693103,LOC107734409 coding downstream 16657 19485939 ~ 19487042 (-)
AMCG00000607 NA coding downstream 121568 19378217 ~ 19382131 (-)
AMCG00000608 LOC107589661,LOC107679124 coding downstream 126078 19361226 ~ 19377621 (-)
AMCG00000609 cfl2 coding downstream 145484 19354563 ~ 19358215 (-)
AMCG00000603 snx6,LOC106611228,LOC107693189,LOC106602024 coding downstream 152431 19342882 ~ 19351268 (-)
AMCG00000619 NA coding upstream 21307 19552361 ~ 19593549 (-)
AMCG00000615 NA coding upstream 351410 19882464 ~ 19887052 (-)
AMCG00000625 gpr135,LOC107564991 coding upstream 439424 19970478 ~ 19971836 (-)
AMCG00000624 l3hypdh,LOC107684001 coding upstream 441317 19972371 ~ 19974873 (-)
AMCG00000623 jkamp coding upstream 444062 19975116 ~ 19988480 (-)
G151416 NA non-coding downstream 20392 19481328 ~ 19483307 (-)
G151393 NA non-coding downstream 103606 19398722 ~ 19400093 (-)
G151291 LOC108257835 non-coding downstream 510855 18989075 ~ 18992844 (-)
G151218 NA non-coding downstream 647202 18856300 ~ 18856497 (-)
G151198 NA non-coding downstream 679031 18791375 ~ 18824668 (-)
G151446 psma3,LOC107729246,LOC107725600 non-coding upstream 81196 19612250 ~ 19619068 (-)
G151447 NA non-coding upstream 90083 19621137 ~ 19623387 (-)
G151678 NA non-coding upstream 1280486 20811540 ~ 20812254 (-)
G151725 NA non-coding upstream 1383387 20914441 ~ 20914680 (-)
G151726 NA non-coding upstream 1384187 20915241 ~ 20916217 (-)
AMCG00000599 NA other downstream 166957 19333717 ~ 19336742 (-)
G151090 NA other downstream 1087858 18415522 ~ 18415841 (-)
G151089 NA other downstream 1089141 18414055 ~ 18414558 (-)
G151088 NA other downstream 1090234 18412840 ~ 18413465 (-)
G151087 NA other downstream 1091174 18411488 ~ 18412525 (-)
AMCG00000618 timm9,LOC107729247,LOC107689314,LOC107693171 other upstream 112810 19643864 ~ 19646607 (-)
G151593 NA other upstream 1101035 20632089 ~ 20634946 (-)
AMCG00000635 NA other upstream 1213325 20744379 ~ 20752657 (-)
AMCG00000653 NA other upstream 1395637 20926691 ~ 20935429 (-)
G151771 NA other upstream 1907213 21438267 ~ 21457795 (-)

Expression


Co-expression Network