AMCG00000615


Basic Information

Item Value
gene id AMCG00000615
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 19882464 ~ 19887052 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000615
GTGACTACAACTGCAACACCAATAGTAACAACAacgcattaattaattaattaattaatcaaacaaaccaatcaaactaatacatacatacaatcgGAGCGTGTTTGATCAAGAATGCCTTATCAGTCCGACACAGCCATGGACTTTAACCCACAGCTTTTGAAACGCCTCCTGGTGTCCCGTTTCAGTGGCCAAGCTGTACTTCTCACTGTCTGCCTCCcattaaactgtattttctgtctgaAATGCTCAGTTCGGGGATGTGGGTTATGATCAGTATCTGTGCAGCATCTTTATCAAGCGCATCTCTGACCGCTAGGCTGGAGGGGGTCTTGTGTGTTTGTCGGTTTCTTGCATGACTTTCAATGGCATCTCTTCTCACGTTTTCACTTCTCATGGACTTTTCTTGATACTGCAGCTCATGCAGGAAATCCTGAGGAAGGAAACACCGGCCATATCTGCAGCATGTGGTTCCCTGCTTGGAGGACCTTCTCTGACAGTGTGACTCGGTTCCTCTCCACTGTTCAATTAGTTCAATTAGAGGACAGTCGGGGCTGAGACATGGCTGGCCGGCGGTTCCGCACGGTGCTGCTGGTCCTGGGTTACCTGGTCTATCTGCTCATGGGAGCCGCGGTGTTTCAAGCACTGGAGCAACAATACGAGCAGGAAATAAAGAGAAAGACCGACCGCCTGAAGCAGCTGTTTCTTAAAAACTTCACCTGCTTGAGCGATGAAGCGGTCGAGACCTTTGTTGAGATGGTGAATGAAGCTGTGAGAAGCGGAGTGAATCTCCTGGAGACCAACAAGACCACCTTAAGCAACTGGGACTTCAGCACCTCATTCTTCTTTGTCGGATCAGTCGTGACCACAATAGGTCTCAAGGCCCAGAAGTCGTATTACCGCGCCCTGGTGGCCGTGTGGATATTGTTTGGCATGGCATGGCTGGCCCTCCTCTTTAACCTCCTGACCACCTTCTACAAAGACACAGAGAAGAAAATCTCCAAAGTGCACCAGAAGAGAAAGGCAGCCAAGGCCAATAAGAGCTCAACGGATGGCTCTGAACTCTCCAAGGCCACCTCAGAGGATTTTGGTATTAACATGGCGACAGGTGACGGCACACTACAAGATGACATCCTGTGTTTGAAGGAAGACCTTCCAGAAGCAGAAACATGTTCATAGGACAGATCTGTGGCCAAGACAGACTCACTGGAGCGTTCAGAAACACTGGGATGCTGTATTCGTAATGCACTGTACTTTTCAGACATAGGACAGCCAGGATGTACGCCATCAGTAAATATCCCCACTGTAGGTAATGTGTCACAGACACTCTTTACACTTTAGGTCAACTGAATggtgttacaaaaataataattaaaaaagtgttgTATATATTTGCTGATTAAGTTAAACTGATTAAACTCAAGAGCCAACTGCAAACATAAACCCAAACGTTGTTCCAGATGTTTGAAGGGAGACCAATCGTCAGATGATGACAAAGCCAGCATCCAGTATTGGTCTTGGATGTCAGGATTGGCAGACGGACCAGAtggctgctgtgctgcacaAAATGCCAAGGTTGACAAGGTGTGCCTTGAGCGTAAAAGGTTGGCAAACACTGGTCTAGGAGACACAGTTAGTTACTACTGAATTCCAGGCTGGTTCAGTTCTGTTAAGTTGGTCAAAGGGACAGCAGTTTACAGCATTGCTTTATCGGTGTGCgtttggtgtgtgttttattatgtgcAACAAGACTGTGgtcatttaaagaaacaaaagaaaacacaggtaTACAAATATGTGCATATGTTTAACTCTAAATACATAATATGGTTTCATAATGGTGTATTGCCTCCTTAggatacatttatacatttatatatggaATAACTTGCATGCACTAATGTAACAACGGCCTCAGAATTGCTTAAAAGTATGTTGTTCGCTTAAGGCACCTTTTTGTTGTCGGTTTACTTTAGCTAATATTAGGTGTAATACTCAAAATGCACAACAGTTTAGCCATTTTCTAAGCAAAGGGGAACCTGTGAACCTTCAGTAAAGTATCAGTCATGGTTATGAAGTTCTGTAACATCTTCCCACTTAATTAAAGCAACAAGTAAACTTCCTGGATGACTGTGAACTTTATAACCACAAAGCGGTGCAGGAACCACAGGAGGCCTCTCACgg

Function

GO:

id name namespace
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003010 voluntary skeletal muscle contraction biological_process
GO:0031444 slow-twitch skeletal muscle fiber contraction biological_process
GO:0014721 twitch skeletal muscle contraction biological_process

KEGG:

id description
ko04261 Adrenergic signaling in cardiomyocytes

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000615 True 2184 mRNA 0.44 3 19882464 19887052

Neighbor

gene id symbol gene type direction distance location
AMCG00000619 NA coding downstream 288915 19552361 ~ 19593549 (-)
AMCG00000611 sstr1,sstr1a,LOC107729242,LOC107586672,LOC107693103,LOC107734409 coding downstream 395422 19485939 ~ 19487042 (-)
AMCG00000607 NA coding downstream 500333 19378217 ~ 19382131 (-)
AMCG00000608 LOC107589661,LOC107679124 coding downstream 504843 19361226 ~ 19377621 (-)
AMCG00000609 cfl2 coding downstream 524249 19354563 ~ 19358215 (-)
AMCG00000625 gpr135,LOC107564991 coding upstream 83426 19970478 ~ 19971836 (-)
AMCG00000624 l3hypdh,LOC107684001 coding upstream 85319 19972371 ~ 19974873 (-)
AMCG00000623 jkamp coding upstream 88064 19975116 ~ 19988480 (-)
AMCG00000633 lrfn5,LOC106601106,LOC106611182,LOC108443922 coding upstream 371125 20258177 ~ 20269173 (-)
AMCG00000629 NA coding upstream 644141 20531193 ~ 20539645 (-)
G151447 NA non-coding downstream 259077 19621137 ~ 19623387 (-)
G151446 psma3,LOC107729246,LOC107725600 non-coding downstream 263396 19612250 ~ 19619068 (-)
G151416 NA non-coding downstream 399157 19481328 ~ 19483307 (-)
G151393 NA non-coding downstream 482371 19398722 ~ 19400093 (-)
G151291 LOC108257835 non-coding downstream 889620 18989075 ~ 18992844 (-)
G151678 NA non-coding upstream 924488 20811540 ~ 20812254 (-)
G151725 NA non-coding upstream 1027389 20914441 ~ 20914680 (-)
G151726 NA non-coding upstream 1028189 20915241 ~ 20916217 (-)
G151727 NA non-coding upstream 1029178 20916230 ~ 20917085 (-)
G151739 NA non-coding upstream 1093021 20980073 ~ 20980345 (-)
AMCG00000618 timm9,LOC107729247,LOC107689314,LOC107693171 other downstream 235857 19643864 ~ 19646607 (-)
AMCG00000613 NA other downstream 351410 19503699 ~ 19531054 (-)
AMCG00000599 NA other downstream 545722 19333717 ~ 19336742 (-)
G151090 NA other downstream 1466623 18415522 ~ 18415841 (-)
G151089 NA other downstream 1467906 18414055 ~ 18414558 (-)
G151593 NA other upstream 745037 20632089 ~ 20634946 (-)
AMCG00000635 NA other upstream 857327 20744379 ~ 20752657 (-)
AMCG00000653 NA other upstream 1039639 20926691 ~ 20935429 (-)
G151771 NA other upstream 1551215 21438267 ~ 21457795 (-)

Expression


Co-expression Network