AMCG00000619


Basic Information

Item Value
gene id AMCG00000619
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 19552361 ~ 19593549 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000619
aTATGTTTTCAGCTAATCCCAAGGTAAATGAGGAACTGAAACACAGATTGCCTGCTCCTATAAAACACCAGTGCAGAGAGACAATAATAGAAGCCAGTAACCGGGATCTCAGttctcCAAAGCAGTACGTTGACTCTAATTCACCTCTCGGTCATACAGGCTCGAGAGAACAAACTGAACATCCAGCAGCAGAGAGTGACGATTGTCAAACCTCCAGAGAGCCGGGAGAGAGAGCACTGACGCATCTGCCAAGAAACAAAGGAGAGATGTCTGAGGGAGCGGGACACCTAAGCCAAGCAGAACAGGGTCCTTTCGAGCCAGAGCAGCCCTGGGAGGAACCGGAGGACTCGCTGGAGAGCAAGCGCAGGAGACCACCTGCCCAGAGCCCCGAGGGTTCGGAGGGGCGCAACGCTGTCCTGCCTCCCAGGCGGAACCTCTCCCCTTCGCCGCAGAACAAGGCAGGCTTGCGAGAAGACAGAGATAATACTCCGGCAAGTGTGTCCTTAACCTCGGTAAAGTCCCCAGCTGTCCTGGATCAGAACAAAAACATAGCCTTCCTCCTGAAAGAGCTGGATTCGATGAGGGATCTGaataaaatgCTCCAGGACAAGCTGGCCACAAAGGAGAAGGAGCTGGAGACGCTGCGCATCGACGCGGAGCTGCGCGAGAGCGTGATGGAGGCCCGCGTGGCCGAGAAGGCCGGAGCTCTAGTGGAGGAAATCTACCGTGCCCAGCGGGAGCGCGACCAGGCGGTGATGGCGCGACTGCGGCTGGCCAACGAGGAGCGAGACGAGGCCCTCCTGAGAGCCAAGCAGCTGCAGCAAGCCACAGCCGGACTGGAAAATATTAACCCCGAAGACAATGACATGGATTGGCAGGAGCTGCTGAACCGGGTGAACAGCGCGGACAGTGCGCTGGCCATCGAGCGGAGCGGCGCGGTGCTGGCGGACCGGCTGCTGAAGACCCgcgagaggaggaagaagatCACGGCCGAGGAGATGAACGCTGTGATCGAGGAGAGGGACACCGCGCTGGCCAAGTGCAAACGCCTCGAGAAGGATCTTCACCATCTGAAAGAGCAGAGCCAGACTTCGGCAAACAACACGAGGCATCTGACTGccgaaaacaatcaagaacgtgCTCAGAAGGCTGAGCTGCAGGCGGCCCAGGCAGAACGAGACCTCGCCCTGAAGAATGCCAAGAAGCTGGAGGAAGAAATCCAGACCCTCCGTGTGTACTACAGTCTACACCAGTCCCTGTCTCAGGAGGCCAGCCTGAAGGAGCAGTTCGACTCGACGCTCAGCTCGTACGAGGAGGCCCTGCGCTCCAAGGAGGGCGTGGCGTCCCTGGCCAGTCTCCACAAAGACCAGCTCCTGGCCCAGCTGCGGACCTCCCTGGCCCAGCACTCACAGAGCCAAGCCCAGCTCCAGCAGGCCCAAGAGGCCCACCGAGAGGCGAACGAAAAGGTTCAAAAGTTGGAGCGGCTGGTGGACGTGCTGAGGAAGAAGGTGGGAGCGGGGACTGTCAGGACGGTGATCTGATTGAAAGGTCGAGTCTGGAGATGCGGCCACATCTGGTGACCAGGCTGCGGCGTTTAACACTGTGTCAACACTGACGCTTTAACTCGGCAAACAGTTGTTAGAAGTGGTGCACTCGGTCGACATTCCTAGCGGAGATCAAACCGAATCATAAATGTTTAACCACTCTGCTGCTGAGATGTTATTCAACCCAAATTTATTTCCTTAAACACTCATTATATGTGTgcgtcatttatttttttatttttttatctccctTCCCCCCTGCGTGGCTCTTGCGGACTGATGTAGCCGACTTCACACTCCTTTCCTGGGCTTGTGGACCCGTGATTCGAACCGCGCTCGCTGCGTTGCCTTTGCATGCCTTCTGAGGCcgagtggttttatttttgtatcgtTTTTTTCCCCGCAGAAATCCCGTTTTctactgaaaaacaacagacactTTACAAAGGTGATGCTCATCAGTGGGGAGATTCCTGTCCCGCTGTGTGGTTTTTAAGAGGggataaatagttttttttaacactttactGGTAGGATAATTGGATAATGCGCTGCTCCATGAATTGTATACGAATTGCTACCTTGCTGTGAAGCAATCATACAGAGACAGAATGCTGTTGACATTTTTCGACATGCAAAAGACTTAAACAGCCTTAAACTGCCAATCACCAGTGAACAGAAATAATGGCATCTCAGCATTAAGGCCACACACCGACCAGGGCTAAATATAGGGTTACTATTTCAACACTGTTTTAGCttcctttaaaaatactgtaatgttCCTGATATTATTAacttattacaaaaacaaccaGAAACACAGCCCACTGAAGCAGTGAATGAACACTGGAGAGCATTATTTTGTAGGACAGTTAAAAGTAAGTACAAGGCCAAGGTTGGAATCTGTAGATTATTTCTGTCCTTTGGATTTCAAAGCTAATTGCTGTTACTAAAATGATAACTGctatttgcaaacattttactCCTGCTAATCAGTTGACACCTTTGAAAGCTATTAACATATAATTGGAGATAAAAGGCCTGTGTTTGACTACTGTGCTCTTTATCTCAGGTTCAGCTCTGAGTGTTGTAATTTGGAAACTGCTTTGGAGAGAAAAAGGTCCCACCATGAACCTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000619 True 2682 mRNA 0.51 12 19552361 19593549

Neighbor

gene id symbol gene type direction distance location
AMCG00000611 sstr1,sstr1a,LOC107729242,LOC107586672,LOC107693103,LOC107734409 coding downstream 65319 19485939 ~ 19487042 (-)
AMCG00000607 NA coding downstream 170230 19378217 ~ 19382131 (-)
AMCG00000608 LOC107589661,LOC107679124 coding downstream 174740 19361226 ~ 19377621 (-)
AMCG00000609 cfl2 coding downstream 194146 19354563 ~ 19358215 (-)
AMCG00000603 snx6,LOC106611228,LOC107693189,LOC106602024 coding downstream 201093 19342882 ~ 19351268 (-)
AMCG00000615 NA coding upstream 288915 19882464 ~ 19887052 (-)
AMCG00000625 gpr135,LOC107564991 coding upstream 376929 19970478 ~ 19971836 (-)
AMCG00000624 l3hypdh,LOC107684001 coding upstream 378822 19972371 ~ 19974873 (-)
AMCG00000623 jkamp coding upstream 381567 19975116 ~ 19988480 (-)
AMCG00000633 lrfn5,LOC106601106,LOC106611182,LOC108443922 coding upstream 664628 20258177 ~ 20269173 (-)
G151416 NA non-coding downstream 69054 19481328 ~ 19483307 (-)
G151393 NA non-coding downstream 152268 19398722 ~ 19400093 (-)
G151291 LOC108257835 non-coding downstream 559517 18989075 ~ 18992844 (-)
G151218 NA non-coding downstream 695864 18856300 ~ 18856497 (-)
G151198 NA non-coding downstream 727693 18791375 ~ 18824668 (-)
G151446 psma3,LOC107729246,LOC107725600 non-coding upstream 18701 19612250 ~ 19619068 (-)
G151447 NA non-coding upstream 27588 19621137 ~ 19623387 (-)
G151678 NA non-coding upstream 1217991 20811540 ~ 20812254 (-)
G151725 NA non-coding upstream 1320892 20914441 ~ 20914680 (-)
G151726 NA non-coding upstream 1321692 20915241 ~ 20916217 (-)
AMCG00000613 NA other downstream 21307 19503699 ~ 19531054 (-)
AMCG00000599 NA other downstream 215619 19333717 ~ 19336742 (-)
G151090 NA other downstream 1136520 18415522 ~ 18415841 (-)
G151089 NA other downstream 1137803 18414055 ~ 18414558 (-)
G151088 NA other downstream 1138896 18412840 ~ 18413465 (-)
AMCG00000618 timm9,LOC107729247,LOC107689314,LOC107693171 other upstream 50315 19643864 ~ 19646607 (-)
G151593 NA other upstream 1038540 20632089 ~ 20634946 (-)
AMCG00000635 NA other upstream 1150830 20744379 ~ 20752657 (-)
AMCG00000653 NA other upstream 1333142 20926691 ~ 20935429 (-)
G151771 NA other upstream 1844718 21438267 ~ 21457795 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location