AMCG00000624 (l3hypdh,LOC107684001)


Basic Information

Item Value
gene id AMCG00000624
gene name l3hypdh,LOC107684001
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 19972371 ~ 19974873 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000624
AAAATTCAAACAACCAATAAGAAATAGCGTATTGAGCAAACTAGACTAACAGAACAAGAACAAAGTTAGCTGGTTGTGTAGATTtgcagaaacaaatgttttattgtatttgtgttattctgGGTCATGTGATCTAGTGATTTGGACAGCtgtatatcataataataattcaatgtatttattttcgaCAGTTATGGCAGAGACTTCACAGCTCCCCCCCCACGATGGCTCGGTGCTCTCGGTGGTGGACATGCACACCGGCGGGGAGCCTCTGCGGGTCATAGTGAGCGGCTTCCCGGAGGTGCACGGAGACAGCGTCCTGGCGAAAAGGCGCTATATATGGCAGAACCTGGACCATCTGAGGAGAGCGCTGATGTTTGAGCCCCGGGGGCACTATGATATGTACGGCGCGCTGATAGTCAAGAGCGAGCTGGAGGAGGCGGATCTGGGGGTGCTCTTCATGCACAACCAGGGGTACAGCACCATGTGCGGCCATGCGGTCATCGCGCTGGGCAGGTTCGCGGTGGATTATGGGTATGTCAAAGCGCCCGTGTCCCCCGAGACCCAGGTCAACATCCAGTGCCCCTGCGGCCTGGTGAAGGCCTTCGTCCAGTACGCCAATGGGAAGACTGGTAGGGTGCGCTTCCACAGCGTGCCGGCGTTTGCCTTTGCAACAGACGTTGCCGTCTCCGTGCCGGGACACGGGGTCGTCGCGGTGGACATCGGCTACGGTGGGGCTTTCTATGCCTTCGTCAGCGCGGAGAAGTTTGGGTTGGACGTCAACGAGTCCAGGACCAGGGACCTCGTGGACGCAGCGGCCGCAGTGACGGCGGCGGTCAAAGCACAGGTGAAACTTCACCATCCCACCAGTCCTGACTTGGCTTACCTCTACGGCACCATCCTCACCGATGGCAAGGACGCCTTTTCTGAGGAACCATCGGCCAACGTGTGCGTGTTTGCCGACTCCCAGGTTGACAGGAGTCCAACCGGCTCAGGAGTGACGGCCCGCATTGCCCTGCAGTTTCATAAAGGGCTTATTCCTCTGGACACGACCAGAACCTTTCAGAGCGGAGCCACGGGTTCCCAGTTTACCGGCAAAGCAGTCGAGGAAACCACCTGCGGCGACTTCAAGGCGGTTATAGTAGAAGTTGCAGGACAGGCACATTATACTGGGACGGCTAGCTTTGTGTTTGAAAAGGATGACACTTTGAACAAAGGCTTTCTTCTGAAGTAATACGATATGGCTTCTCTATAgagatgtattttgttaatcagtgccttcattataaaatcaatatatccATTGATAAATATTAAGCACCAGCATTACGGCATTCTTGAATGTTTTtatgcaaacaaatgtattaaaatcagAAAGCTCAAGGCTCATAACTTTCAAATACATCTTAATCAGTTTGCCATGATGTCGTTCATTTTCACGGCTGTTTAGAATTCCTGTTTTTATGGCATAACGTGCAGAGTATGTTTCCAATAAGTACGAACccaataaacaatgttttttgtgtcagcatttgtaaatatttgatgAATTTGACTTTTGCTGCCAGTAGAATTACTTCACAGGAAATGctaaataacattaaatcatTTTGCATTCAAATGGTATTTGTAaactacaaatgtaatgttttatattctcAAGTTCCACTGTATTCAAAGCAGAGGACAAGTTGTATCGCATGTTTATAATGACAATATCTAGTATATCACACATGCAGACGTATTGATTATTGACGTCACTGAATgatatcaaacaaaaatagataaatGACGACTGAACTCTGAATGTTGCCtacttttcattaataaaac

Function

symbol description
l3hypdh Predicted to enable trans-L-3-hydroxyproline dehydratase activity.

NR:

description
PREDICTED: trans-3-hydroxy-L-proline dehydratase isoform X2

GO: NA

KEGG:

id description
K18384 L3HYPDH; trans-L-3-hydroxyproline dehydratase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000624 True 1833 mRNA 0.47 5 19972371 19974873

Neighbor

gene id symbol gene type direction distance location
AMCG00000625 gpr135,LOC107564991 coding downstream 535 19970478 ~ 19971836 (-)
AMCG00000615 NA coding downstream 85319 19882464 ~ 19887052 (-)
AMCG00000619 NA coding downstream 378822 19552361 ~ 19593549 (-)
AMCG00000611 sstr1,sstr1a,LOC107729242,LOC107586672,LOC107693103,LOC107734409 coding downstream 485329 19485939 ~ 19487042 (-)
AMCG00000607 NA coding downstream 590240 19378217 ~ 19382131 (-)
AMCG00000623 jkamp coding upstream 243 19975116 ~ 19988480 (-)
AMCG00000633 lrfn5,LOC106601106,LOC106611182,LOC108443922 coding upstream 283304 20258177 ~ 20269173 (-)
AMCG00000629 NA coding upstream 556320 20531193 ~ 20539645 (-)
AMCG00000628 pnn,LOC107586617 coding upstream 565135 20540008 ~ 20544727 (-)
AMCG00000627 NA coding upstream 570984 20545857 ~ 20549579 (-)
G151447 NA non-coding downstream 348984 19621137 ~ 19623387 (-)
G151446 psma3,LOC107729246,LOC107725600 non-coding downstream 353303 19612250 ~ 19619068 (-)
G151416 NA non-coding downstream 489064 19481328 ~ 19483307 (-)
G151393 NA non-coding downstream 572278 19398722 ~ 19400093 (-)
G151291 LOC108257835 non-coding downstream 979527 18989075 ~ 18992844 (-)
G151678 NA non-coding upstream 836667 20811540 ~ 20812254 (-)
G151725 NA non-coding upstream 939568 20914441 ~ 20914680 (-)
G151726 NA non-coding upstream 940368 20915241 ~ 20916217 (-)
G151727 NA non-coding upstream 941357 20916230 ~ 20917085 (-)
G151739 NA non-coding upstream 1005200 20980073 ~ 20980345 (-)
AMCG00000618 timm9,LOC107729247,LOC107689314,LOC107693171 other downstream 325764 19643864 ~ 19646607 (-)
AMCG00000613 NA other downstream 441317 19503699 ~ 19531054 (-)
AMCG00000599 NA other downstream 635629 19333717 ~ 19336742 (-)
G151090 NA other downstream 1556530 18415522 ~ 18415841 (-)
G151089 NA other downstream 1557813 18414055 ~ 18414558 (-)
G151593 NA other upstream 657216 20632089 ~ 20634946 (-)
AMCG00000635 NA other upstream 769506 20744379 ~ 20752657 (-)
AMCG00000653 NA other upstream 951818 20926691 ~ 20935429 (-)
G151771 NA other upstream 1463394 21438267 ~ 21457795 (-)

Expression


Co-expression Network