AMCG00000635


Basic Information

Item Value
gene id AMCG00000635
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 20744379 ~ 20752657 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000635
ATGTCAGCGGGGCGGAGTACGGACGCGACGCGGGAGATGCAGATCCCCCTGCAACACCGCGCCCCCTCCCTGCCGCTCCACTCGCTGCCCCAGCGGCCTTGGACTGAGCCCGGCTTCCAGCCCCCCCATGGCGGCTTCCGAGACCACTTCGTCACCCCTCCGGAGGCCAAGTACTGCTGTGAGGCCTGCCGGCTGGTGCTGTGCAGCCCCTGGCAGACGGAATGCGGCCATCGCTTCTGCAAGACCTGCATCACCGACCTGCTCAGCAAGCCCGGCGCCATGTGCCCAGCAGACGGGGAGCCGCTCTTTGAGGACAAGATCTTCAAGGATGTGTGCTGCAACAAAGAGATCATGGACCTAAAGGTGTTCTGCCGGAGCGAGAAGAACGGCTGCAAAGAACAGATGAGCCTGAAGCAAGTTCTGGACCACTTGAACGTGTGTCCGTACTTTGAGGTGCCCTGCCCCCATAACAAGTGCAAGGACAAGATGATGAGGAAGGACATATCTGAACATCTGAGCAGGAAGTGCAAGTACAGGGAGAGCACCTGCGAGTTCTGCAAGCGCAAGATGTCCCTCACGGAGATACAGaaacacaaagaaacagtcTGTCCCGCTTACCCTGTCGCCTGCCCCAATAAGTGTAGCTGCCCCTCAAAAATCTTAAGAAGCGAGctccccagCCACCAGCTTGACTGCCCCAACGCCCAGGCCAGCTGCATGTTCACTCGCTATGGATGCACGTTCAAGGGCCTGAACCAGGAGATGAGGGCCCACGAGGCCAAGTGCATCTCCGACCACCTGAAGCTCATGGTGGCCAGGAATTCTGCACTGGAGGCGAAGGCAAGTACCGAGAGGGTGACCCTGGCTGACCGCTCTTTAAATGACATGGGCCctctctctgcgtctctctcGCCGGTTGTGCGCTGCGGGCCCCGTGTCATGTGTCTGGGCCGCGCTGGGGTTTTGAGAAGGGTCTCAATGATGGAGGAGGTGAAGTCCGACCTGCACGAGCGCTACAAGGTGCTGCCCGGCCTGAACTCGCGCATCTCCGAGATGGAGGCCCGGTACGAGGAGCTGCGGGAGAAGACCAAGCAGATGGAGCAGAAGATCTGCAGCATTCAGAAGCTGGCCAGCTCCCACTCGGAGAAACTGCTGGAGGTGGAGATGGAGCTGCGGGCACTGCGGGCAGCACGGGACGAGCTGGAGACGCTGCGCTGCACTGTGGAGACCATCCGCACACGCGTGTCGGTGCTGGAGGGGGGCCGGGGCACAGCCGGCGCCGGGGGACACACTCTAGGCAAGTCCAGCGCGCACACAGGCGCGCACACGCACACCGACTGCACTTTAGAGACGCAGCTGTCCCGGCATGACGACATGCTCAGCATCCACGAGATCCGGCTGGCCGACATGGACCTGCGCTTCCAGCGGCGCAAGCAGGAGGCCGTGGCGTCCAAGACCCTGTCGCTGTACAGCCAGCCCTTCTACACCGGCTACTTCGGCTACAAGATGTGCGCCCGGGTCTACCTCAACGGCGACGGCATGGGCAAGGGCACGCACCTGTCGCTGTTCTTCGTGGTGATGCGCGGCGAGTACGACGCCCTGCTGCCCTGGCCCTTCCGGCAGAAGGTGACGCTGATGCTCATGGACCAGGGCCCGGCCCGGAAGCACCTGGGCGACGCCTTCAAGCCCGACCCCAACAGCAGCAGCTTCCGGCGGCCGGTGGGCGACATGAACATCGCCTCGGGCTGCCCGCTGTTCGTGGCCCAGACGGTGCTGGAGAACGGGACGTACATCAAGGACGACACCATCTTCATCAAGGTGACGGTGGACACCTCGGACCTGCCCGAGCCCTGA
>TU190947
AGATGGAGGAGGTGAAGTCCGACCTGCACGAGCGCTACAAGGTGCTGCCCGGCCTGAACTCGCGCATCTCCGAGATGGAGGCCCGGTACGAGGAGCTGCGGGAGAAGACCAAGCAGATGGAGCAGAAGATCTGCAGCATTCAGAAGCTGGCCAGCTCCCACTCGGAGAAACTGCTGGAGGTGGAGATGGAGCTGCGGGCACTGCGGGCAGCACGGGACGAGCTGGAGACGCTGCGCTGCACTGTGGAGACCATCCGCACACGCGTGTCGGTGCTGGAGGGGGGCCGGGGCACAGCCGGCGCCGGGGGACACACTCTAGGCA

Function

GO:

id name namespace
GO:0006952 defense response biological_process
GO:0002376 immune system process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0001878 response to yeast biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K03174 TRAF3; TNF receptor-associated factor 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000635 True 1854 mRNA 0.63 11 20744379 20752657
TU190947 False 321 TUCP 0.66 2 20746671 20747321

Neighbor

gene id symbol gene type direction distance location
AMCG00000636 NA coding downstream 3315 20734583 ~ 20741064 (-)
AMCG00000632 LOC107684818,LOC107723542,LOC107746282 coding downstream 76366 20666634 ~ 20668013 (-)
AMCG00000631 NA coding downstream 116821 20620472 ~ 20627558 (-)
AMCG00000630 NA coding downstream 126653 20601669 ~ 20617726 (-)
AMCG00000627 NA coding downstream 194800 20545857 ~ 20549579 (-)
AMCG00000644 NA coding upstream 17424 20770081 ~ 20791578 (-)
AMCG00000645 tecpr2,LOC106600983 coding upstream 59623 20812280 ~ 20835927 (-)
AMCG00000647 NA coding upstream 83727 20836384 ~ 20837506 (-)
AMCG00000646 NA coding upstream 86548 20839205 ~ 20844566 (-)
AMCG00000652 NA coding upstream 165005 20917662 ~ 20920464 (-)
G151447 NA non-coding downstream 1120992 19621137 ~ 19623387 (-)
G151446 psma3,LOC107729246,LOC107725600 non-coding downstream 1125311 19612250 ~ 19619068 (-)
G151416 NA non-coding downstream 1261072 19481328 ~ 19483307 (-)
G151393 NA non-coding downstream 1344286 19398722 ~ 19400093 (-)
G151291 LOC108257835 non-coding downstream 1751535 18989075 ~ 18992844 (-)
G151678 NA non-coding upstream 58883 20811540 ~ 20812254 (-)
G151725 NA non-coding upstream 161784 20914441 ~ 20914680 (-)
G151726 NA non-coding upstream 162584 20915241 ~ 20916217 (-)
G151727 NA non-coding upstream 163573 20916230 ~ 20917085 (-)
G151739 NA non-coding upstream 227416 20980073 ~ 20980345 (-)
G151593 NA other downstream 109433 20632089 ~ 20634946 (-)
AMCG00000618 timm9,LOC107729247,LOC107689314,LOC107693171 other downstream 1097772 19643864 ~ 19646607 (-)
AMCG00000613 NA other downstream 1213325 19503699 ~ 19531054 (-)
AMCG00000599 NA other downstream 1407637 19333717 ~ 19336742 (-)
G151090 NA other downstream 2328538 18415522 ~ 18415841 (-)
AMCG00000653 NA other upstream 174034 20926691 ~ 20935429 (-)
G151771 NA other upstream 685610 21438267 ~ 21457795 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000189_02080315_02089268 TRAF3 coding CI01000189 null 2079637 ~ 2089268 (-)
rainbow trout (Oncorhynchus mykiss) G95219 NA non-coding NC_048565.1 CM023219.2 84474348 ~ 84517175 (-)
mexican tetra (Astyanax mexicanus) G77902 traf3,LOC107719479,LOC107697656,LOC107590913 non-coding NC_035905.1 CM008308.1 3356530 ~ 3359703 (-)