AMCG00000653


Basic Information

Item Value
gene id AMCG00000653
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 20926691 ~ 20935429 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000653
ATGCAGCGTCAGGGGCCCCGTGTGCTCCTGTGGGGAGACGTGGATGGGGCACTCTGCGTCAGTCGTAcatcgggggggggggagAAAGAAGTGGATCCCTACTGGAATCTGTCTGTGAAAGTGCTCCATGCCAAGAACATTGCCAAGAGTGACATCTTGTCCCAGTCGGATTGCTACGTCACCCTCCGACTCCCCACCGCCTCGGCCAAGACCCACCGCACCAAGACGGTGAACGACTCCAGCTCGCCCGTGTGGAACGAGACCTTCCACTACCGGATCCACAGCCGTGTGAAGAATATTCTAGAGCTCAACATTTACGACGAAGACACAGTGTCCTGCGATGACCGGGTCTCCAAAGTGCTATTTGACATCGACAACCTGTCCCCTGGAAAGACGGAGAGGAAGGTCTTCTTGTTGGACCCTCAGACTCGGGACGAGCTGTGGGTGGAGTTCGCGATGGAGGAGAGCAATGATCCTCCTGGACAGTACATCACCAACGGGGTCCTGGTGGCCGGCCCATTTGCCCGACTGGAGGTCAAGGTGAAGGAGAAGGAGACCAAACATGAAGACAAAAACCTGGTGCTGAAGCTGACCGGGGCGTACGAGGAGGAGCAGGTCGTGCCTGGCAAAGGCCCGGACGGTGCCTCCGCTGAGCCCCTCACCTTCTACATCAACGGGGACTTGGAAACCGAGCTGAAGGTCAAGCTCCGTTCAGTCAAGcatgaaggaaaaaaaatggaaagcattaacaaagaagaagaaacagaagtagcagaagaagaagaacaagtgGAAGGAGAAGTCATACCTTCAGCACTGAAGTTTCTTCCCGCTGGACAGGAAGTGGTGCTCTCGGTTCCCGTGGGACAGGAAGACGTTGACCTCCAGCTGAAGACGACAGATTGCTCGAAGGAACTCGACGTGCGCCTGAGCTTTGACATCCCGGAGGAAGAGAAGGAATTCGTGGAGAGGAGGCGGCGGCTGGTGACTCCGGCCTTGCAGAGGGCGCTGCAGCTGAGCCAGGCACCCAAGCCCCAGGAGGTAGGAATTGGCCTCGGACACACGTGTAAACACACATGTACCTGGCAATACAATGCATAA
>TU191039
TCTtttaacaaaaatcaaacatttagTTTAACTGATCTGTATTCTTCAGTTGTGTTGATAAAATCAAGCCGCcctttcagttttctttctccCCCGCCCCCAAGAGAAAACCTTCTCTCTTTTGgggaatatatttatttaatcctttACTTCTTTGACTGGGTTCGTCAGGCAGTCTCTTTCACAGAGGTTTTGTGTAGTCGTATTAGGAAATGAGCCACAGCATGCAATGTGATTCACACGTTCCCCCTCGAGGTCCGCAGTGGTTTCTCACTCCCACTCGTGAGCGCCCACTGGTGTGTGTGACTGAGAGTGAGGACATCACACTAAACCACCAGCATGACTGaacacattcataaaatacacacacctctctctccctgtataaatatattcctCTGTATCAGGTAAGTCATTCATTCTGCTCTGATCAATGCAACGCCACTAAGGAAAGCCTATTCTTATAAAGATTCGGAAAGATCTGAAAAAGTTTCGTGAGCATTGCCCAAAAGTGAAAATTACTGAAGGTAAGTAGAACAACGAGTGGGACATTTTGTCATCTTTCGAAAGACAATGATTgactttattatataattagatAATCGGCACAAACCAAAGTCCAgctataattaaaacaaagatgcaAGACTTTTTGTGAAAAATTTAAACGCAGGCCACGGCCTCTCATCCCAGAAATGTCTACTGTGcagttttaaaagtatattcCCAGAAATGTTCCAGTACATATTAACTTGGTGTTATTAAAAGATAAAGGACTAATTAAGCACTGGGGTGTGTGAGACCAGTGGAGGGGTTATGCTTTTCTAGCTAACAATAGTTAGCGAGCAGATGAGATGCATGATGTTTTATAAGAGTCAGGGAGGTCGGTCTGCCGCAGTCTGAGGACTCCAGCACTTCAGCCAGGGGTTTCTGCTCCGCTTCACTGCCCTGAATTGAAAGAAGTGGATCCCTACTGGAATCTGTCTGTGAAAGTGCTCCATGCCAAGAACATTGCCAAGAGTGACATCTTGTCCCAGTCGGATTGCTACGTCACCCTCCGACTCCCCACCGCCTCGGCCAAGACCCACCGCACCAAGACGGTGAACGACTCCAGCTCGCCCGTGTGGAACGAGACCTTCCACTACCGGATCCACAGCCGTGTGAAGAATATTCTAGAGCTCAACATTTACGACGAAGACACAGTGTCCTGCGATGACCGGGTCTCCAAAGTGCTATTTGACATCGACAACCTGTCCCCTGGAAAGACGGAGAGGAAGGTCTTCTTGTTGGACCCTCAGACTCGGGACGAGCTGTGGGTGGAGTTCGCGATGGAGGAGAGCAATGATCCTCCTGGACAGTACATCACCAACGGGGTCCTGGTGGCCGGCCCATTTGCCCGACTGGAGGTCAAGGTGAAGGAGAAGGAGACCAAACATGAAGACAAAAACCTGGTGCTGAAGCTGACCGGGGCGTACGAGGAGGAGCAGGTCGTGCCTGGCAAAGGCCCGGACGGTGCCTCCGCTGAGCCCCTCACCTTCTACATCAACGGGGACTTGGAAACCGAGCTGAAGGTCAAGCTCCGTTCAGTCAAGcatgaaggaaaaaaaatggaaagcattaacaaagaagaagaaacagaagtagcagaagaagaagaacaagtgGAAGGAGAAGTCATACCTTCAGCACTGAAGTTTCTTCCCGCTGGACAGGAAGTGGTGCTCTCGGTTCCCGTGGGACAGGAAGACGTTGACCTCCAGCTGAAGACGACAGATTGCTCGAAGGAACTCGACGTGCGCCTGAGCTTTGACATCCCGGAGGAAGAGAAGGAATTCGTGGAGAGGAGGCGGCGGCTGGTGACTCCGGCCTTGCAGAGGGCGCTGCAGCTGAGCCAGGCACCCAAGCCCCAGGAGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000653 False 1101 mRNA 0.56 11 20926691 20931514
TU191039 True 1915 TUCP 0.48 11 20926749 20935429

Neighbor

gene id symbol gene type direction distance location
AMCG00000652 NA coding downstream 6227 20917662 ~ 20920464 (-)
AMCG00000646 NA coding downstream 82125 20839205 ~ 20844566 (-)
AMCG00000647 NA coding downstream 89185 20836384 ~ 20837506 (-)
AMCG00000645 tecpr2,LOC106600983 coding downstream 90764 20812280 ~ 20835927 (-)
AMCG00000644 NA coding downstream 135113 20770081 ~ 20791578 (-)
AMCG00000651 NA coding upstream 109 20935538 ~ 20938564 (-)
AMCG00000638 LOC106528523,LOC107589717,LOC107756760,LOC107669728,LOC107685091 coding upstream 93983 21029412 ~ 21030347 (-)
AMCG00000639 NA coding upstream 105780 21041209 ~ 21045473 (-)
AMCG00000640 LOC102294743,LOC101473355,LOC100707633,LOC102192616,LOC105930114,LOC103476188 coding upstream 154168 21089597 ~ 21091487 (-)
AMCG00000655 NA coding upstream 417452 21352881 ~ 21374399 (-)
G151727 NA non-coding downstream 9606 20916230 ~ 20917085 (-)
G151726 NA non-coding downstream 10474 20915241 ~ 20916217 (-)
G151725 NA non-coding downstream 12011 20914441 ~ 20914680 (-)
G151678 NA non-coding downstream 114437 20811540 ~ 20812254 (-)
G151447 NA non-coding downstream 1303304 19621137 ~ 19623387 (-)
G151739 NA non-coding upstream 44644 20980073 ~ 20980345 (-)
AMCG00000635 NA other downstream 174034 20744379 ~ 20752657 (-)
G151593 NA other downstream 291745 20632089 ~ 20634946 (-)
AMCG00000618 timm9,LOC107729247,LOC107689314,LOC107693171 other downstream 1280084 19643864 ~ 19646607 (-)
AMCG00000613 NA other downstream 1395637 19503699 ~ 19531054 (-)
AMCG00000599 NA other downstream 1589949 19333717 ~ 19336742 (-)
G151771 NA other upstream 502838 21438267 ~ 21457795 (-)

Expression


Co-expression Network